Wall clock time and date at job start Mon Mar 30 2020 05:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47340 * 239.99947 * 3 2 1 5 5 H 1.48504 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47596 * 119.99381 * 3 2 1 7 7 C 1.37881 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00282 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99649 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.46718 * 180.02562 * 9 7 2 11 11 C 1.42902 * 113.99732 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47143 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.46858 * 65.00108 * 12 11 10 14 14 C 1.48531 * 111.00048 * 58.15277 * 13 12 11 15 15 C 1.54931 * 103.22912 * 159.71980 * 14 13 12 16 16 C 1.54596 * 102.92060 * 322.58285 * 15 14 13 17 17 C 1.47908 * 110.99737 * 175.54765 * 13 12 11 18 18 H 1.09003 * 110.07778 * 333.59746 * 17 13 12 19 19 C 1.52995 * 109.91858 * 94.80251 * 17 13 12 20 20 C 1.52995 * 109.47416 * 291.79359 * 19 17 13 21 21 C 1.50697 * 109.47408 * 185.28408 * 20 19 17 22 22 O 1.20823 * 120.00131 * 0.02562 * 21 20 19 23 23 O 1.34234 * 120.00129 * 179.97438 * 21 20 19 24 24 H 0.96999 * 120.00023 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46870 * 60.00539 * 9 7 2 26 26 H 1.08999 * 109.47308 * 299.99878 * 9 7 2 27 27 H 1.09009 * 109.46794 * 60.00217 * 11 10 9 28 28 H 1.08995 * 109.47452 * 300.00332 * 11 10 9 29 29 H 1.09007 * 109.47030 * 305.00476 * 12 11 10 30 30 H 1.08998 * 109.46950 * 185.00196 * 12 11 10 31 31 H 1.08996 * 110.66841 * 41.27901 * 14 13 12 32 32 H 1.09009 * 110.66190 * 278.15140 * 14 13 12 33 33 H 1.09002 * 110.72664 * 204.22701 * 15 14 13 34 34 H 1.09001 * 110.87943 * 81.01304 * 15 14 13 35 35 H 1.08996 * 110.31321 * 263.03810 * 16 15 14 36 36 H 1.09005 * 110.31178 * 140.87358 * 16 15 14 37 37 H 1.08996 * 109.47082 * 171.79146 * 19 17 13 38 38 H 1.09000 * 109.47166 * 51.79292 * 19 17 13 39 39 H 1.09003 * 109.47034 * 65.28564 * 20 19 17 40 40 H 1.09000 * 109.47206 * 305.28852 * 20 19 17 41 41 H 0.96695 * 117.00004 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 2.1797 -3.5853 0.0027 11 6 1.5652 -4.8754 0.0032 12 6 2.6482 -5.9562 0.0036 13 7 3.4082 -5.8872 1.2588 14 6 2.5141 -6.0573 2.4326 15 6 3.4872 -6.4816 3.5610 16 6 4.4961 -7.3917 2.8235 17 6 4.3956 -6.9854 1.3415 18 1 4.0615 -7.8347 0.7455 19 6 5.7575 -6.5007 0.8403 20 6 5.6828 -6.2372 -0.6649 21 6 7.0538 -5.8852 -1.1819 22 8 7.9943 -5.8493 -0.4244 23 8 7.2304 -5.6125 -2.4844 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8920 27 1 0.9454 -4.9830 -0.8870 28 1 0.9447 -4.9820 0.8930 29 1 3.3217 -5.7959 -0.8383 30 1 2.1822 -6.9375 -0.0855 31 1 1.7779 -6.8390 2.2453 32 1 2.0230 -5.1165 2.6816 33 1 2.9602 -7.0385 4.3358 34 1 3.9905 -5.6135 3.9867 35 1 4.2219 -8.4392 2.9480 36 1 5.5056 -7.2172 3.1959 37 1 6.5102 -7.2637 1.0387 38 1 6.0283 -5.5801 1.3574 39 1 4.9992 -5.4098 -0.8554 40 1 5.3214 -7.1313 -1.1728 41 1 8.1279 -5.3924 -2.7691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385337142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:52 Heat of formation + Delta-G solvation = -146.312638 kcal Electronic energy + Delta-G solvation = -21398.192774 eV Core-core repulsion = 18084.688451 eV Total energy + Delta-G solvation = -3313.504323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31915 -39.25701 -36.55966 -36.17519 -33.45325 -32.99033 -32.20347 -28.72965 -28.11888 -26.50558 -24.60341 -22.57381 -22.23114 -20.76492 -20.41125 -20.10888 -18.07415 -16.56640 -16.49432 -16.31953 -15.85432 -15.59803 -15.25456 -14.62915 -14.38553 -14.12157 -13.48645 -13.34834 -13.12115 -13.03314 -12.63730 -12.18577 -12.03536 -11.82222 -11.55110 -11.42121 -11.16137 -11.10029 -10.93303 -10.86596 -10.79152 -10.67403 -10.55044 -10.49067 -10.22932 -9.90967 -9.06436 -8.76296 -8.20491 -8.09873 -6.06876 -4.07791 2.21568 3.05093 3.35506 3.37727 3.42234 4.03439 4.38605 4.53895 4.69583 4.87084 4.93083 5.00078 5.07972 5.18025 5.29698 5.34060 5.44446 5.47600 5.54443 5.59217 5.72731 5.76373 5.85365 5.94869 5.97579 6.02203 6.10265 6.16676 6.24055 6.32796 6.34786 6.50062 7.08221 7.13502 7.25600 7.47298 7.84677 7.87878 8.20776 8.64982 9.06471 9.56965 11.04734 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.004971 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.158639 B = 5631.295717 C = 6836.293469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.380 6.380 11 C 0.064 3.936 12 C 0.045 3.955 13 N -0.496 5.496 14 C 0.036 3.964 15 C -0.123 4.123 16 C -0.125 4.125 17 C 0.064 3.936 18 H 0.051 0.949 19 C -0.090 4.090 20 C -0.120 4.120 21 C 0.481 3.519 22 O -0.522 6.522 23 O -0.518 6.518 24 H 0.264 0.736 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -17.276 0.991 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.299 6.299 11 C -0.014 4.014 12 C -0.083 4.083 13 N -0.221 5.221 14 C -0.092 4.092 15 C -0.161 4.161 16 C -0.163 4.163 17 C -0.045 4.045 18 H 0.069 0.931 19 C -0.128 4.128 20 C -0.157 4.157 21 C 0.324 3.676 22 O -0.410 6.410 23 O -0.330 6.330 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.116 0.884 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 8.525 -16.698 1.318 18.794 hybrid contribution 0.116 0.260 -0.361 0.460 sum 8.641 -16.438 0.957 18.595 Atomic orbital electron populations 1.69952 1.06092 1.27156 1.50803 1.24934 0.94943 0.99363 0.95246 0.86420 0.79322 0.82016 0.78859 1.20051 1.21217 1.20018 1.21023 0.94046 0.89353 1.50479 0.91583 1.20163 0.88820 0.83872 0.95070 1.87946 1.34644 1.12287 1.95025 1.22264 0.93837 0.86307 0.98990 1.22505 0.96262 0.96239 0.93267 1.64719 1.13498 1.42087 1.01781 1.23228 0.94663 1.00894 0.90380 1.22469 0.96825 0.99611 0.97205 1.22422 1.00600 0.99113 0.94178 1.22432 0.93434 0.92400 0.96242 0.93139 1.21441 0.95853 1.03070 0.92400 1.21633 0.91353 1.05072 0.97666 1.23702 0.92278 0.72182 0.79397 1.90699 1.43857 1.48864 1.57604 1.84575 1.39027 1.81267 1.28112 0.92693 0.98026 0.97980 0.94344 0.94538 0.89654 0.94269 0.94230 0.89338 0.91415 0.90514 0.91720 0.90786 0.91146 0.89837 0.85880 0.88388 0.73495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -15.19 9.43 -34.44 -0.32 -15.52 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.20 5.37 5.69 36.01 0.20 5.58 16 10 O -0.38 -9.08 10.27 -35.23 -0.36 -9.44 16 11 C 0.06 1.16 5.89 37.16 0.22 1.38 16 12 C 0.05 0.64 4.90 -3.83 -0.02 0.62 16 13 N -0.50 -7.08 4.83 -222.57 -1.07 -8.15 16 14 C 0.04 0.48 5.33 -1.90 -0.01 0.47 16 15 C -0.12 -1.36 7.06 -24.87 -0.18 -1.54 16 16 C -0.13 -1.25 6.57 -25.37 -0.17 -1.42 16 17 C 0.06 0.72 2.58 -66.64 -0.17 0.55 16 18 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 19 C -0.09 -1.05 4.01 -26.74 -0.11 -1.16 16 20 C -0.12 -1.37 4.80 -27.89 -0.13 -1.50 16 21 C 0.48 6.05 8.33 36.00 0.30 6.34 16 22 O -0.52 -7.96 16.67 -18.75 -0.31 -8.27 16 23 O -0.52 -5.45 13.42 -39.27 -0.53 -5.98 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 26 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 27 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 28 H 0.04 0.65 6.64 -51.93 -0.34 0.30 16 29 H 0.09 1.18 5.33 -51.92 -0.28 0.91 16 30 H 0.04 0.47 7.97 -51.93 -0.41 0.05 16 31 H 0.04 0.48 8.02 -51.93 -0.42 0.06 16 32 H 0.09 1.38 7.54 -51.92 -0.39 0.98 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.72 7.69 -51.93 -0.40 0.32 16 37 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.12 1.63 6.05 -51.93 -0.31 1.32 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.41 2.54 9.10 45.56 0.41 2.95 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -34.10 334.61 -7.88 -41.99 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.88 Total: -1.25 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -0.48 Total: -4.66 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.34 Total: -34.57 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -1.20 Total: -23.69 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.10 -7.88 -41.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385337142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.327 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds