Wall clock time and date at job start Mon Mar 30 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47340 * 239.99947 * 3 2 1 5 5 H 1.48504 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47596 * 119.99381 * 3 2 1 7 7 C 1.37881 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00282 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99649 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.46718 * 180.02562 * 9 7 2 11 11 C 1.42902 * 113.99732 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47143 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.46858 * 65.00108 * 12 11 10 14 14 C 1.48531 * 111.00048 * 58.15277 * 13 12 11 15 15 C 1.54931 * 103.22912 * 159.71980 * 14 13 12 16 16 C 1.54596 * 102.92060 * 322.58285 * 15 14 13 17 17 C 1.47908 * 110.99737 * 175.54765 * 13 12 11 18 18 H 1.09003 * 110.07778 * 333.59746 * 17 13 12 19 19 C 1.52995 * 109.91858 * 94.80251 * 17 13 12 20 20 C 1.52995 * 109.47416 * 291.79359 * 19 17 13 21 21 C 1.50697 * 109.47408 * 185.28408 * 20 19 17 22 22 O 1.20823 * 120.00131 * 0.02562 * 21 20 19 23 23 O 1.34234 * 120.00129 * 179.97438 * 21 20 19 24 24 H 0.96999 * 120.00023 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46870 * 60.00539 * 9 7 2 26 26 H 1.08999 * 109.47308 * 299.99878 * 9 7 2 27 27 H 1.09009 * 109.46794 * 60.00217 * 11 10 9 28 28 H 1.08995 * 109.47452 * 300.00332 * 11 10 9 29 29 H 1.09007 * 109.47030 * 305.00476 * 12 11 10 30 30 H 1.08998 * 109.46950 * 185.00196 * 12 11 10 31 31 H 1.08996 * 110.66841 * 41.27901 * 14 13 12 32 32 H 1.09009 * 110.66190 * 278.15140 * 14 13 12 33 33 H 1.09002 * 110.72664 * 204.22701 * 15 14 13 34 34 H 1.09001 * 110.87943 * 81.01304 * 15 14 13 35 35 H 1.08996 * 110.31321 * 263.03810 * 16 15 14 36 36 H 1.09005 * 110.31178 * 140.87358 * 16 15 14 37 37 H 1.08996 * 109.47082 * 171.79146 * 19 17 13 38 38 H 1.09000 * 109.47166 * 51.79292 * 19 17 13 39 39 H 1.09003 * 109.47034 * 65.28564 * 20 19 17 40 40 H 1.09000 * 109.47206 * 305.28852 * 20 19 17 41 41 H 0.96695 * 117.00004 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 2.1797 -3.5853 0.0027 11 6 1.5652 -4.8754 0.0032 12 6 2.6482 -5.9562 0.0036 13 7 3.4082 -5.8872 1.2588 14 6 2.5141 -6.0573 2.4326 15 6 3.4872 -6.4816 3.5610 16 6 4.4961 -7.3917 2.8235 17 6 4.3956 -6.9854 1.3415 18 1 4.0615 -7.8347 0.7455 19 6 5.7575 -6.5007 0.8403 20 6 5.6828 -6.2372 -0.6649 21 6 7.0538 -5.8852 -1.1819 22 8 7.9943 -5.8493 -0.4244 23 8 7.2304 -5.6125 -2.4844 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8920 27 1 0.9454 -4.9830 -0.8870 28 1 0.9447 -4.9820 0.8930 29 1 3.3217 -5.7959 -0.8383 30 1 2.1822 -6.9375 -0.0855 31 1 1.7779 -6.8390 2.2453 32 1 2.0230 -5.1165 2.6816 33 1 2.9602 -7.0385 4.3358 34 1 3.9905 -5.6135 3.9867 35 1 4.2219 -8.4392 2.9480 36 1 5.5056 -7.2172 3.1959 37 1 6.5102 -7.2637 1.0387 38 1 6.0283 -5.5801 1.3574 39 1 4.9992 -5.4098 -0.8554 40 1 5.3214 -7.1313 -1.1728 41 1 8.1279 -5.3924 -2.7691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385337142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:51 Heat of formation + Delta-G solvation = -171.262731 kcal Electronic energy + Delta-G solvation = -21399.274691 eV Core-core repulsion = 18084.688451 eV Total energy + Delta-G solvation = -3314.586241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29353 -40.27695 -38.31839 -37.13083 -35.01731 -34.38040 -33.58677 -29.92080 -29.57102 -28.23061 -25.60115 -24.47029 -23.65001 -21.68344 -21.52161 -21.03605 -19.03244 -18.60379 -17.60797 -17.48097 -17.26876 -16.92123 -16.40335 -16.35336 -15.77452 -15.56177 -14.98145 -14.41710 -14.27234 -14.05068 -13.92105 -13.55775 -13.34282 -13.14329 -12.83765 -12.72693 -12.67986 -12.52229 -12.31550 -12.23299 -12.04632 -11.93118 -11.76976 -11.53078 -11.37589 -11.34975 -11.20246 -10.83419 -10.15528 -9.20029 -8.31124 -6.42643 1.23996 1.39088 1.43683 1.52020 2.21685 2.35084 3.01562 3.02564 3.28136 3.65043 3.81952 4.02345 4.09425 4.17870 4.22507 4.32744 4.35374 4.46097 4.52657 4.63377 4.67308 4.69824 4.80748 4.83384 4.91011 4.97691 5.02368 5.08874 5.15742 5.20953 5.25338 5.32536 5.42376 5.56341 5.65542 5.98900 6.08896 6.23835 6.58629 6.88110 7.02337 7.29532 8.80985 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.004971 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.158639 B = 5631.295717 C = 6836.293469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.211 3.789 10 O -0.393 6.393 11 C 0.054 3.946 12 C 0.053 3.947 13 N -0.527 5.527 14 C 0.034 3.966 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.066 3.934 18 H 0.075 0.925 19 C -0.084 4.084 20 C -0.117 4.117 21 C 0.484 3.516 22 O -0.554 6.554 23 O -0.517 6.517 24 H 0.270 0.730 25 H -0.016 1.016 26 H -0.020 1.020 27 H 0.046 0.954 28 H 0.036 0.964 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.142 -18.494 0.681 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.136 3.864 10 O -0.313 6.313 11 C -0.024 4.024 12 C -0.074 4.074 13 N -0.252 5.252 14 C -0.093 4.093 15 C -0.158 4.158 16 C -0.158 4.158 17 C -0.042 4.042 18 H 0.093 0.907 19 C -0.122 4.122 20 C -0.154 4.154 21 C 0.328 3.672 22 O -0.446 6.446 23 O -0.330 6.330 24 H 0.079 0.921 25 H 0.002 0.998 26 H -0.002 1.002 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.147 0.853 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 9.294 -17.937 0.988 20.226 hybrid contribution -0.147 0.582 -0.299 0.670 sum 9.147 -17.355 0.690 19.631 Atomic orbital electron populations 1.70056 1.07670 1.28608 1.50656 1.25911 0.95925 1.03214 0.94008 0.85298 0.78171 0.77038 0.79298 1.19016 1.19808 1.19302 1.21344 0.93954 0.90990 1.51993 0.92339 1.19747 0.88617 0.84987 0.93048 1.87902 1.34554 1.13804 1.95038 1.22634 0.95705 0.84732 0.99291 1.22451 0.95360 0.95942 0.93689 1.64628 1.14322 1.44401 1.01835 1.23176 0.95354 0.99698 0.91089 1.22444 0.96733 0.99531 0.97093 1.22435 1.00305 1.00109 0.92919 1.22482 0.92053 0.92044 0.97573 0.90676 1.21377 0.96607 1.01909 0.92351 1.21640 0.90365 1.05644 0.97783 1.23911 0.92294 0.71352 0.79619 1.90688 1.44955 1.50464 1.58464 1.84538 1.40704 1.80724 1.27027 0.92086 0.99825 1.00203 0.93592 0.94586 0.89239 0.90779 0.92506 0.92894 0.89293 0.92348 0.89179 0.90636 0.89969 0.93011 0.87774 0.85262 0.71401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 2 C 0.01 0.46 5.46 84.66 0.46 0.92 16 3 Si 0.98 45.40 29.54 68.60 2.03 47.43 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.55 -33.28 9.43 25.60 0.24 -33.03 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.21 12.11 5.69 71.24 0.41 12.52 16 10 O -0.39 -19.42 10.27 -148.98 -1.53 -20.95 16 11 C 0.05 1.96 5.89 71.98 0.42 2.38 16 12 C 0.05 1.44 4.90 86.30 0.42 1.86 16 13 N -0.53 -14.54 4.83 -858.09 -4.14 -18.68 16 14 C 0.03 0.90 5.33 86.65 0.46 1.36 16 15 C -0.12 -2.52 7.06 31.80 0.22 -2.29 16 16 C -0.12 -2.09 6.57 31.47 0.21 -1.89 16 17 C 0.07 1.34 2.58 45.06 0.12 1.46 16 18 H 0.08 1.19 7.67 -2.39 -0.02 1.17 16 19 C -0.08 -1.87 4.01 30.59 0.12 -1.75 16 20 C -0.12 -2.50 4.80 29.85 0.14 -2.36 16 21 C 0.48 11.67 8.33 71.23 0.59 12.26 16 22 O -0.55 -16.69 16.67 21.97 0.37 -16.32 16 23 O -0.52 -10.12 13.42 -51.45 -0.69 -10.81 16 24 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 25 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 26 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 27 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.04 1.31 6.64 -2.39 -0.02 1.29 16 29 H 0.09 2.34 5.33 -2.38 -0.01 2.33 16 30 H 0.07 1.50 7.97 -2.39 -0.02 1.48 16 31 H 0.06 1.26 8.02 -2.39 -0.02 1.24 16 32 H 0.05 1.72 7.54 -2.38 -0.02 1.71 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.31 7.69 -2.38 -0.02 1.29 16 37 H 0.08 1.63 7.95 -2.39 -0.02 1.61 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.10 2.70 6.05 -2.39 -0.01 2.68 16 40 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.42 4.69 9.10 -74.06 -0.67 4.01 16 Total: -1.00 -75.03 334.61 0.48 -74.55 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.34 Total: 9.81 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 3.82 Total: -8.56 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -3.86 Total: -75.14 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -1.85 Total: -48.08 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -75.03 0.48 -74.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385337142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.717 kcal (2) G-P(sol) polarization free energy of solvation -75.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds