Wall clock time and date at job start Mon Mar 30 2020 05:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48498 * 109.47198 * 270.00219 * 3 2 1 5 5 H 1.48503 * 109.47365 * 30.00506 * 3 2 1 6 6 H 1.48506 * 109.46946 * 150.00039 * 3 2 1 7 7 C 1.37876 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99613 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00005 * 179.72267 * 7 2 1 10 10 O 1.42895 * 109.46940 * 180.27471 * 9 7 2 11 11 C 1.42907 * 114.00044 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47141 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47404 * 66.46109 * 12 11 10 14 14 C 1.47901 * 110.99888 * 293.19530 * 13 12 11 15 15 C 1.53991 * 107.05525 * 214.15266 * 14 13 12 16 16 C 1.54588 * 105.14325 * 1.22724 * 15 14 13 17 17 C 1.48537 * 111.00215 * 175.79772 * 13 12 11 18 18 H 1.08997 * 110.66438 * 41.28749 * 17 13 12 19 19 C 1.53004 * 110.66665 * 278.15826 * 17 13 12 20 20 C 1.53002 * 109.47148 * 62.23787 * 19 17 13 21 21 C 1.50696 * 109.46639 * 171.93658 * 20 19 17 22 22 O 1.20821 * 120.00212 * 0.02562 * 21 20 19 23 23 O 1.34234 * 119.99472 * 179.97438 * 21 20 19 24 24 H 0.97004 * 119.99794 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47031 * 300.27608 * 9 7 2 26 26 H 1.08997 * 109.46989 * 60.27450 * 9 7 2 27 27 H 1.08997 * 109.46625 * 300.00420 * 11 10 9 28 28 H 1.09008 * 109.46566 * 59.99892 * 11 10 9 29 29 H 1.09003 * 109.46708 * 186.46283 * 12 11 10 30 30 H 1.09004 * 109.47130 * 306.45672 * 12 11 10 31 31 H 1.08998 * 109.92141 * 333.50802 * 14 13 12 32 32 H 1.09008 * 109.91458 * 94.80302 * 14 13 12 33 33 H 1.09006 * 110.30668 * 120.14468 * 15 14 13 34 34 H 1.09000 * 110.30867 * 242.30570 * 15 14 13 35 35 H 1.09002 * 110.72904 * 140.31323 * 16 15 14 36 36 H 1.09004 * 110.72485 * 263.42146 * 16 15 14 37 37 H 1.08995 * 109.46726 * 182.24339 * 19 17 13 38 38 H 1.09001 * 109.46770 * 302.23544 * 19 17 13 39 39 H 1.09001 * 109.46723 * 291.93880 * 20 19 17 40 40 H 1.08999 * 109.46747 * 51.93809 * 20 19 17 41 41 H 0.96703 * 116.99484 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0069 10 8 3.9879 -2.5412 -0.0126 11 6 5.4124 -2.6541 -0.0195 12 6 5.8069 -4.1323 -0.0259 13 7 5.3930 -4.7441 -1.2957 14 6 3.9188 -4.7892 -1.4065 15 6 3.5627 -6.0762 -2.1734 16 6 4.9172 -6.7647 -2.4578 17 6 5.8488 -6.1553 -1.3802 18 1 5.7135 -6.6611 -0.4242 19 6 7.3103 -6.2248 -1.8276 20 6 8.1947 -5.5289 -0.7910 21 6 9.6443 -5.7671 -1.1267 22 8 9.9398 -6.4253 -2.0959 23 8 10.6073 -5.2470 -0.3496 24 1 -0.4850 0.8401 0.0004 25 1 3.8712 -0.6776 -0.8969 26 1 3.8786 -0.6827 0.8830 27 1 5.8110 -2.1681 -0.9100 28 1 5.8193 -2.1728 0.8700 29 1 6.8877 -4.2203 0.0845 30 1 5.3143 -4.6434 0.8013 31 1 3.4722 -4.8136 -0.4125 32 1 3.5610 -3.9184 -1.9560 33 1 2.9325 -6.7201 -1.5598 34 1 3.0585 -5.8322 -3.1085 35 1 4.8355 -7.8442 -2.3311 36 1 5.2709 -6.5210 -3.4597 37 1 7.6122 -7.2679 -1.9215 38 1 7.4192 -5.7270 -2.7912 39 1 7.9908 -4.4582 -0.7996 40 1 7.9800 -5.9318 0.1988 41 1 11.5225 -5.4265 -0.6053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385337143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:55 Heat of formation + Delta-G solvation = -135.354291 kcal Electronic energy + Delta-G solvation = -21381.352382 eV Core-core repulsion = 18068.323248 eV Total energy + Delta-G solvation = -3313.029134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55390 -39.24682 -36.79077 -36.39554 -33.64286 -32.97781 -32.19893 -28.76097 -28.46318 -27.05804 -24.58695 -22.58322 -21.79913 -20.85336 -20.49770 -20.03078 -18.30752 -17.06846 -16.85256 -16.55715 -15.98552 -15.63267 -15.21323 -14.46382 -14.41216 -14.22357 -13.67265 -13.46135 -13.10411 -12.92233 -12.70921 -12.49423 -12.35923 -11.81541 -11.77904 -11.53239 -11.41205 -11.16520 -11.00733 -10.88957 -10.70259 -10.69213 -10.56676 -10.30633 -10.18327 -9.85435 -9.17709 -8.83932 -8.46384 -8.19285 -6.12593 -4.11469 1.97664 2.80859 3.24476 3.31538 3.32852 4.07930 4.34962 4.47348 4.63945 4.72484 4.83101 4.90474 5.02376 5.15340 5.19350 5.33754 5.35198 5.39525 5.54288 5.62844 5.71809 5.82260 5.89274 5.95867 5.96567 6.03756 6.10275 6.16257 6.24309 6.28993 6.46313 6.62421 6.70420 7.00508 7.16346 7.28784 7.59636 7.64568 8.01157 8.65751 8.98185 9.47164 11.00382 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022667 B = 0.004082 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.972813 B = 6856.916913 C = 7857.047043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.081 0.919 9 C 0.169 3.831 10 O -0.378 6.378 11 C 0.060 3.940 12 C 0.029 3.971 13 N -0.510 5.510 14 C 0.051 3.949 15 C -0.135 4.135 16 C -0.115 4.115 17 C 0.060 3.940 18 H 0.053 0.947 19 C -0.090 4.090 20 C -0.125 4.125 21 C 0.478 3.522 22 O -0.518 6.518 23 O -0.519 6.519 24 H 0.266 0.734 25 H -0.002 1.002 26 H 0.000 1.000 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.517 -12.465 -1.446 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.100 0.900 9 C 0.094 3.906 10 O -0.297 6.297 11 C -0.018 4.018 12 C -0.098 4.098 13 N -0.235 5.235 14 C -0.076 4.076 15 C -0.173 4.173 16 C -0.153 4.153 17 C -0.049 4.049 18 H 0.071 0.929 19 C -0.128 4.128 20 C -0.162 4.162 21 C 0.321 3.679 22 O -0.407 6.407 23 O -0.331 6.331 24 H 0.076 0.924 25 H 0.016 0.984 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.122 0.878 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 17.109 -12.270 -2.000 21.149 hybrid contribution 0.804 0.703 0.594 1.222 sum 17.913 -11.566 -1.406 21.369 Atomic orbital electron populations 1.69876 1.06065 1.27072 1.50429 1.24764 0.94780 0.98752 0.94652 0.86857 0.80326 0.83816 0.78780 1.19931 1.20846 1.19149 1.20874 0.88285 0.95208 1.51133 0.90043 1.20567 0.96071 0.79741 0.94234 1.87936 1.17501 1.29234 1.95026 1.22332 0.85126 0.94951 0.99410 1.22830 1.00787 0.95181 0.91038 1.64780 1.11528 1.14622 1.32566 1.22810 0.86498 0.97703 1.00633 1.22481 0.96862 0.97042 1.00933 1.22460 0.94908 0.98966 0.99004 1.22803 0.94001 0.90061 0.98015 0.92871 1.21367 0.92111 1.00890 0.98462 1.21902 0.86273 1.05545 1.02467 1.23766 0.89362 0.75081 0.79708 1.90716 1.84157 1.37672 1.28132 1.84570 1.20231 1.72207 1.56114 0.92391 0.98422 0.98189 0.93483 0.94104 0.88856 0.93933 0.92427 0.89148 0.91896 0.91162 0.91481 0.90733 0.90688 0.90103 0.85890 0.87847 0.73362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.33 27.46 -169.99 -4.67 16.66 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.23 6.55 56.52 0.37 -5.86 16 7 C -0.52 -15.09 9.99 -34.44 -0.34 -15.44 16 8 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.17 4.21 4.76 36.01 0.17 4.38 16 10 O -0.38 -8.33 7.55 -35.23 -0.27 -8.60 16 11 C 0.06 1.01 6.19 37.15 0.23 1.24 16 12 C 0.03 0.40 4.89 -3.83 -0.02 0.38 16 13 N -0.51 -7.05 4.95 -222.63 -1.10 -8.15 16 14 C 0.05 0.81 5.06 -2.76 -0.01 0.80 16 15 C -0.13 -1.73 6.93 -25.38 -0.18 -1.91 16 16 C -0.12 -1.25 6.50 -24.88 -0.16 -1.41 16 17 C 0.06 0.66 2.59 -65.78 -0.17 0.49 16 18 H 0.05 0.57 8.02 -51.93 -0.42 0.15 16 19 C -0.09 -0.89 4.40 -26.73 -0.12 -1.01 16 20 C -0.12 -1.09 4.21 -27.88 -0.12 -1.21 16 21 C 0.48 4.65 8.32 36.00 0.30 4.95 16 22 O -0.52 -6.59 16.61 -18.75 -0.31 -6.90 16 23 O -0.52 -3.95 13.42 -39.27 -0.53 -4.48 16 24 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.00 -0.05 7.56 -51.93 -0.39 -0.44 16 26 H 0.00 0.01 7.21 -51.93 -0.37 -0.36 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.09 0.97 3.77 -51.93 -0.20 0.78 16 30 H 0.04 0.60 7.91 -51.93 -0.41 0.19 16 31 H 0.06 1.03 6.98 -51.93 -0.36 0.67 16 32 H 0.09 1.71 7.67 -51.92 -0.40 1.31 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.12 1.10 5.71 -51.93 -0.30 0.81 16 40 H 0.10 0.75 7.96 -51.93 -0.41 0.34 16 41 H 0.41 1.44 9.10 45.56 0.41 1.85 16 LS Contribution 327.04 15.07 4.93 4.93 Total: -1.00 -33.37 327.04 -7.49 -40.86 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.80 Total: -0.91 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.52 Total: -6.74 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.33 Total: -34.82 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -1.10 Total: -19.98 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.37 -7.49 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385337143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.495 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds