Wall clock time and date at job start Mon Mar 30 2020 05:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48498 * 109.47198 * 270.00219 * 3 2 1 5 5 H 1.48503 * 109.47365 * 30.00506 * 3 2 1 6 6 H 1.48506 * 109.46946 * 150.00039 * 3 2 1 7 7 C 1.37876 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99613 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00005 * 179.72267 * 7 2 1 10 10 O 1.42895 * 109.46940 * 180.27471 * 9 7 2 11 11 C 1.42907 * 114.00044 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47141 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47404 * 66.46109 * 12 11 10 14 14 C 1.47901 * 110.99888 * 293.19530 * 13 12 11 15 15 C 1.53991 * 107.05525 * 214.15266 * 14 13 12 16 16 C 1.54588 * 105.14325 * 1.22724 * 15 14 13 17 17 C 1.48537 * 111.00215 * 175.79772 * 13 12 11 18 18 H 1.08997 * 110.66438 * 41.28749 * 17 13 12 19 19 C 1.53004 * 110.66665 * 278.15826 * 17 13 12 20 20 C 1.53002 * 109.47148 * 62.23787 * 19 17 13 21 21 C 1.50696 * 109.46639 * 171.93658 * 20 19 17 22 22 O 1.20821 * 120.00212 * 0.02562 * 21 20 19 23 23 O 1.34234 * 119.99472 * 179.97438 * 21 20 19 24 24 H 0.97004 * 119.99794 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47031 * 300.27608 * 9 7 2 26 26 H 1.08997 * 109.46989 * 60.27450 * 9 7 2 27 27 H 1.08997 * 109.46625 * 300.00420 * 11 10 9 28 28 H 1.09008 * 109.46566 * 59.99892 * 11 10 9 29 29 H 1.09003 * 109.46708 * 186.46283 * 12 11 10 30 30 H 1.09004 * 109.47130 * 306.45672 * 12 11 10 31 31 H 1.08998 * 109.92141 * 333.50802 * 14 13 12 32 32 H 1.09008 * 109.91458 * 94.80302 * 14 13 12 33 33 H 1.09006 * 110.30668 * 120.14468 * 15 14 13 34 34 H 1.09000 * 110.30867 * 242.30570 * 15 14 13 35 35 H 1.09002 * 110.72904 * 140.31323 * 16 15 14 36 36 H 1.09004 * 110.72485 * 263.42146 * 16 15 14 37 37 H 1.08995 * 109.46726 * 182.24339 * 19 17 13 38 38 H 1.09001 * 109.46770 * 302.23544 * 19 17 13 39 39 H 1.09001 * 109.46723 * 291.93880 * 20 19 17 40 40 H 1.08999 * 109.46747 * 51.93809 * 20 19 17 41 41 H 0.96703 * 116.99484 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0069 10 8 3.9879 -2.5412 -0.0126 11 6 5.4124 -2.6541 -0.0195 12 6 5.8069 -4.1323 -0.0259 13 7 5.3930 -4.7441 -1.2957 14 6 3.9188 -4.7892 -1.4065 15 6 3.5627 -6.0762 -2.1734 16 6 4.9172 -6.7647 -2.4578 17 6 5.8488 -6.1553 -1.3802 18 1 5.7135 -6.6611 -0.4242 19 6 7.3103 -6.2248 -1.8276 20 6 8.1947 -5.5289 -0.7910 21 6 9.6443 -5.7671 -1.1267 22 8 9.9398 -6.4253 -2.0959 23 8 10.6073 -5.2470 -0.3496 24 1 -0.4850 0.8401 0.0004 25 1 3.8712 -0.6776 -0.8969 26 1 3.8786 -0.6827 0.8830 27 1 5.8110 -2.1681 -0.9100 28 1 5.8193 -2.1728 0.8700 29 1 6.8877 -4.2203 0.0845 30 1 5.3143 -4.6434 0.8013 31 1 3.4722 -4.8136 -0.4125 32 1 3.5610 -3.9184 -1.9560 33 1 2.9325 -6.7201 -1.5598 34 1 3.0585 -5.8322 -3.1085 35 1 4.8355 -7.8442 -2.3311 36 1 5.2709 -6.5210 -3.4597 37 1 7.6122 -7.2679 -1.9215 38 1 7.4192 -5.7270 -2.7912 39 1 7.9908 -4.4582 -0.7996 40 1 7.9800 -5.9318 0.1988 41 1 11.5225 -5.4265 -0.6053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385337143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:55 Heat of formation + Delta-G solvation = -160.306297 kcal Electronic energy + Delta-G solvation = -21382.434382 eV Core-core repulsion = 18068.323248 eV Total energy + Delta-G solvation = -3314.111134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31698 -40.29417 -38.39226 -37.10646 -34.94946 -34.50864 -33.61224 -30.37094 -29.59219 -28.55048 -25.51938 -24.05273 -23.50820 -21.71798 -21.52092 -21.03793 -19.03263 -19.02552 -17.94691 -17.47210 -17.20584 -16.94051 -16.57915 -16.19779 -15.68678 -15.36895 -14.95946 -14.59351 -14.28218 -14.21280 -13.94162 -13.76636 -13.55906 -13.06106 -13.01004 -12.85866 -12.51155 -12.46158 -12.32079 -12.12507 -11.90814 -11.79788 -11.77609 -11.53299 -11.41745 -11.29693 -11.16971 -10.91167 -10.28098 -9.32499 -8.36770 -6.43849 1.25754 1.33168 1.35645 1.46387 2.19477 2.29320 2.96249 3.02278 3.14233 3.63191 3.78138 4.03250 4.08299 4.11348 4.22093 4.38146 4.40792 4.43457 4.53534 4.57315 4.63056 4.66399 4.77066 4.85221 4.90194 4.97622 5.01869 5.03667 5.12200 5.19597 5.26818 5.38073 5.40200 5.46646 5.67701 5.95207 6.01719 6.20905 6.60158 6.78159 7.04201 7.20809 8.80244 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022667 B = 0.004082 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.972813 B = 6856.916913 C = 7857.047043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.540 4.540 8 H 0.031 0.969 9 C 0.180 3.820 10 O -0.398 6.398 11 C 0.048 3.952 12 C 0.034 3.966 13 N -0.517 5.517 14 C 0.056 3.944 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.063 3.937 18 H 0.065 0.935 19 C -0.082 4.082 20 C -0.125 4.125 21 C 0.485 3.515 22 O -0.553 6.553 23 O -0.516 6.516 24 H 0.272 0.728 25 H 0.005 0.995 26 H 0.010 0.990 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.133 0.867 30 H 0.038 0.962 31 H 0.029 0.971 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.388 -12.296 -1.001 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.577 4.577 8 H 0.049 0.951 9 C 0.105 3.895 10 O -0.317 6.317 11 C -0.029 4.029 12 C -0.093 4.093 13 N -0.242 5.242 14 C -0.072 4.072 15 C -0.171 4.171 16 C -0.148 4.148 17 C -0.045 4.045 18 H 0.083 0.917 19 C -0.120 4.120 20 C -0.162 4.162 21 C 0.329 3.671 22 O -0.445 6.445 23 O -0.329 6.329 24 H 0.081 0.919 25 H 0.023 0.977 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.150 0.850 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 20.018 -12.121 -1.543 23.452 hybrid contribution -0.088 0.557 0.470 0.734 sum 19.929 -11.563 -1.073 23.066 Atomic orbital electron populations 1.70033 1.08215 1.28669 1.51321 1.25809 0.95751 1.03307 0.93601 0.85638 0.79479 0.77761 0.79642 1.18671 1.19892 1.16917 1.21142 0.90945 0.93716 1.51928 0.95099 1.20250 0.93205 0.81443 0.94644 1.87930 1.21092 1.27531 1.95172 1.22710 0.82129 0.97691 1.00329 1.22919 1.02901 0.92808 0.90676 1.64729 1.09732 1.16830 1.32913 1.22566 0.88127 0.97691 0.98804 1.22450 0.98452 0.95818 1.00420 1.22479 0.93125 1.00126 0.99026 1.22876 0.94765 0.88182 0.98673 0.91706 1.21251 0.91249 1.01388 0.98145 1.21891 0.85717 1.05418 1.03151 1.23815 0.89917 0.74257 0.79062 1.90714 1.84718 1.39395 1.29630 1.84526 1.21368 1.71548 1.55475 0.91888 0.97748 0.97274 0.93250 0.92305 0.84988 0.94397 0.95256 0.93257 0.91234 0.91446 0.89110 0.90655 0.89916 0.91457 0.85830 0.85639 0.71263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.45 13.96 21.45 0.30 -59.15 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.95 43.59 27.46 68.60 1.88 45.47 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.25 -10.34 6.55 99.48 0.65 -9.69 16 7 C -0.54 -32.74 9.99 25.60 0.26 -32.48 16 8 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 9 C 0.18 9.01 4.76 71.24 0.34 9.35 16 10 O -0.40 -17.89 7.55 -148.98 -1.12 -19.01 16 11 C 0.05 1.57 6.19 71.98 0.45 2.02 16 12 C 0.03 0.87 4.89 86.30 0.42 1.29 16 13 N -0.52 -13.88 4.95 -858.26 -4.25 -18.12 16 14 C 0.06 1.87 5.06 86.45 0.44 2.31 16 15 C -0.13 -3.44 6.93 31.47 0.22 -3.22 16 16 C -0.11 -2.19 6.50 31.80 0.21 -1.99 16 17 C 0.06 1.26 2.59 45.26 0.12 1.37 16 18 H 0.06 1.20 8.02 -2.39 -0.02 1.18 16 19 C -0.08 -1.42 4.40 30.60 0.13 -1.29 16 20 C -0.13 -1.80 4.21 29.85 0.13 -1.67 16 21 C 0.48 8.16 8.32 71.23 0.59 8.75 16 22 O -0.55 -13.04 16.61 21.98 0.37 -12.68 16 23 O -0.52 -6.28 13.42 -51.45 -0.69 -6.97 16 24 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 25 H 0.00 0.23 7.56 -2.39 -0.02 0.21 16 26 H 0.01 0.46 7.21 -2.39 -0.02 0.44 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.13 2.30 3.77 -2.39 -0.01 2.29 16 30 H 0.04 1.01 7.91 -2.38 -0.02 0.99 16 31 H 0.03 1.11 6.98 -2.39 -0.02 1.10 16 32 H 0.05 2.01 7.67 -2.38 -0.02 1.99 16 33 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.51 8.06 -2.38 -0.02 1.49 16 37 H 0.08 1.36 7.84 -2.39 -0.02 1.34 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.12 1.79 5.71 -2.39 -0.01 1.77 16 40 H 0.13 1.30 7.96 -2.39 -0.02 1.28 16 41 H 0.43 1.81 9.10 -74.05 -0.67 1.14 16 Total: -1.00 -75.38 327.04 0.54 -74.85 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.29 Total: 9.92 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 3.76 Total: -14.31 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.95 Total: -77.27 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.45 Total: -38.66 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -75.38 0.54 -74.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385337143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.459 kcal (2) G-P(sol) polarization free energy of solvation -75.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds