Wall clock time and date at job start Mon Mar 30 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99779 * 2 1 4 4 H 1.48505 * 109.46820 * 269.99457 * 3 2 1 5 5 H 1.48497 * 109.47142 * 29.99556 * 3 2 1 6 6 H 1.48498 * 109.47071 * 149.99613 * 3 2 1 7 7 C 1.37875 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99643 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.46608 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99883 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47279 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46958 * 66.29497 * 12 11 10 14 14 C 1.46842 * 111.00442 * 48.38766 * 13 12 11 15 15 C 1.53037 * 109.52628 * 174.15866 * 14 13 12 16 16 C 1.53120 * 109.27582 * 59.18271 * 15 14 13 17 17 C 1.53131 * 109.15909 * 302.34599 * 16 15 14 18 18 H 1.08996 * 109.49901 * 297.71186 * 17 16 15 19 19 C 1.52997 * 109.53278 * 177.61464 * 17 16 15 20 20 C 1.50704 * 109.47133 * 65.09843 * 19 17 16 21 21 O 1.20821 * 120.00232 * 359.97438 * 20 19 17 22 22 O 1.34231 * 119.99886 * 179.97438 * 20 19 17 23 23 C 1.46853 * 110.99770 * 284.17413 * 13 12 11 24 24 H 0.96994 * 120.00274 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47149 * 59.99793 * 9 7 2 26 26 H 1.08994 * 109.46847 * 299.99137 * 9 7 2 27 27 H 1.08997 * 109.47363 * 59.99046 * 11 10 9 28 28 H 1.09007 * 109.46789 * 299.99607 * 11 10 9 29 29 H 1.08992 * 109.47364 * 306.29478 * 12 11 10 30 30 H 1.09004 * 109.47268 * 186.29124 * 12 11 10 31 31 H 1.09000 * 109.46196 * 294.18359 * 14 13 12 32 32 H 1.09009 * 109.45938 * 54.15732 * 14 13 12 33 33 H 1.08995 * 109.50358 * 179.11783 * 15 14 13 34 34 H 1.09001 * 109.50362 * 299.20363 * 15 14 13 35 35 H 1.08995 * 109.52552 * 182.44069 * 16 15 14 36 36 H 1.09003 * 109.52434 * 62.24858 * 16 15 14 37 37 H 1.09004 * 109.46962 * 185.09599 * 19 17 16 38 38 H 1.08998 * 109.47700 * 305.09805 * 19 17 16 39 39 H 0.96701 * 116.99915 * 179.97438 * 22 20 19 40 40 H 1.09001 * 109.45748 * 65.82593 * 23 13 12 41 41 H 1.08995 * 109.45748 * 305.85760 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5653 -4.8754 0.0000 12 6 2.6482 -5.9561 -0.0006 13 7 3.3882 -5.9085 1.2675 14 6 2.4691 -5.8634 2.4119 15 6 3.2678 -5.9614 3.7136 16 6 4.2606 -4.7979 3.7863 17 6 5.1747 -4.8397 2.5585 18 1 5.7485 -5.7664 2.5635 19 6 6.1315 -3.6463 2.5922 20 6 7.0538 -3.7752 3.7771 21 8 6.9557 -4.7239 4.5187 22 8 7.9845 -2.8359 4.0084 23 6 4.3208 -4.7742 1.2903 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 0.9453 -4.9822 -0.8901 28 1 0.9449 -4.9827 0.8898 29 1 3.3350 -5.7818 -0.8288 30 1 2.1839 -6.9358 -0.1137 31 1 1.9147 -4.9250 2.3956 32 1 1.7714 -6.6986 2.3503 33 1 2.5867 -5.9121 4.5631 34 1 3.8111 -6.9061 3.7370 35 1 4.8616 -4.8879 4.6911 36 1 3.7153 -3.8542 3.8025 37 1 6.7194 -3.6259 1.6746 38 1 5.5582 -2.7231 2.6769 39 1 8.5526 -2.9617 4.7808 40 1 3.7577 -3.8410 1.2794 41 1 4.9676 -4.8184 0.4142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385343130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:46 Heat of formation + Delta-G solvation = -151.985473 kcal Electronic energy + Delta-G solvation = -21926.371619 eV Core-core repulsion = 18612.621303 eV Total energy + Delta-G solvation = -3313.750316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.44922 -39.03778 -36.72721 -36.07898 -34.11510 -32.69911 -31.88190 -28.89786 -27.65502 -26.76902 -24.05033 -22.83112 -22.30265 -21.77168 -20.20942 -19.28759 -18.06539 -16.54948 -16.45203 -15.98950 -15.79987 -15.61072 -14.96497 -14.61625 -14.29298 -14.07919 -13.72086 -13.59972 -12.89306 -12.80888 -12.58130 -12.21774 -11.94362 -11.77378 -11.52898 -11.46932 -11.35273 -10.93577 -10.88960 -10.78076 -10.72017 -10.53713 -10.43297 -10.16580 -10.09963 -9.86999 -9.16697 -8.87580 -8.24927 -7.81375 -6.16335 -4.18718 2.20601 3.03084 3.25832 3.31442 3.35454 4.21244 4.31643 4.79340 4.82492 4.95590 5.17217 5.20293 5.26035 5.35627 5.47517 5.59198 5.62644 5.67891 5.72497 5.80459 5.92419 5.96306 6.02762 6.08285 6.13660 6.25298 6.26178 6.34397 6.42735 6.49723 6.59441 6.78437 7.05253 7.35668 7.41055 7.43612 7.72468 7.87887 8.08825 8.49443 8.93845 9.46514 10.95082 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.006052 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.009079 B = 4625.578663 C = 6159.677024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.022 3.978 12 C 0.059 3.941 13 N -0.531 5.531 14 C 0.048 3.952 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.070 4.070 18 H 0.080 0.920 19 C -0.112 4.112 20 C 0.481 3.519 21 O -0.515 6.515 22 O -0.520 6.520 23 C 0.051 3.949 24 H 0.264 0.736 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.406 0.594 40 H 0.080 0.920 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.978 -9.858 5.764 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.310 6.310 11 C -0.057 4.057 12 C -0.069 4.069 13 N -0.255 5.255 14 C -0.080 4.080 15 C -0.148 4.148 16 C -0.161 4.161 17 C -0.089 4.089 18 H 0.098 0.902 19 C -0.150 4.150 20 C 0.324 3.676 21 O -0.403 6.403 22 O -0.331 6.331 23 C -0.076 4.076 24 H 0.074 0.926 25 H 0.021 0.979 26 H 0.020 0.980 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.264 0.736 40 H 0.098 0.902 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.009 -10.345 5.659 15.467 hybrid contribution -0.190 1.587 0.372 1.641 sum 9.819 -8.759 6.031 14.475 Atomic orbital electron populations 1.69958 1.06132 1.27198 1.50361 1.24949 0.94950 0.99436 0.95109 0.86371 0.79694 0.82366 0.78284 1.20442 1.21087 1.19560 1.21015 0.93913 0.89288 1.51022 0.91595 1.20184 0.88826 0.83714 0.95223 1.87853 1.35239 1.12942 1.94991 1.23070 0.96361 0.86677 0.99597 1.22250 0.95404 0.96868 0.92422 1.62150 1.18250 1.43114 1.01958 1.22150 0.94528 1.00772 0.90539 1.21499 0.97859 0.99009 0.96425 1.21774 0.97365 0.98770 0.98229 1.21008 0.95310 0.96594 0.95981 0.90153 1.21465 0.96247 1.02781 0.94516 1.23696 0.78757 0.78842 0.86337 1.90678 1.69199 1.32328 1.48114 1.84588 1.46276 1.51061 1.51212 1.22293 0.94794 0.94648 0.95888 0.92625 0.97894 0.97995 0.94373 0.94035 0.90308 0.90123 0.93559 0.91507 0.91988 0.91589 0.90771 0.92111 0.87478 0.87015 0.73622 0.90180 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.51 -14.57 9.43 -34.44 -0.32 -14.90 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.19 5.17 5.69 36.01 0.20 5.38 16 10 O -0.39 -8.77 7.55 -35.23 -0.27 -9.04 16 11 C 0.02 0.39 5.52 37.16 0.21 0.60 16 12 C 0.06 0.87 6.01 -3.82 -0.02 0.84 16 13 N -0.53 -7.96 4.86 -234.67 -1.14 -9.10 16 14 C 0.05 0.70 4.49 -3.84 -0.02 0.68 16 15 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 16 C -0.12 -1.75 5.00 -26.60 -0.13 -1.88 16 17 C -0.07 -0.95 2.00 -90.54 -0.18 -1.13 16 18 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 19 C -0.11 -1.36 5.29 -27.88 -0.15 -1.51 16 20 C 0.48 5.87 8.06 36.01 0.29 6.16 16 21 O -0.51 -7.49 14.74 -18.75 -0.28 -7.77 16 22 O -0.52 -5.19 13.42 -39.26 -0.53 -5.72 16 23 C 0.05 0.79 4.24 -3.83 -0.02 0.77 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 26 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.74 6.05 -51.92 -0.31 0.43 16 29 H 0.08 1.16 7.87 -51.93 -0.41 0.75 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.79 6.45 -51.93 -0.33 0.45 16 32 H 0.07 0.88 8.12 -51.92 -0.42 0.46 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.07 6.03 -51.93 -0.31 0.76 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.41 2.26 9.10 45.56 0.41 2.68 16 40 H 0.08 1.50 5.80 -51.93 -0.30 1.20 16 41 H 0.07 1.02 7.96 -51.93 -0.41 0.60 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -31.94 326.75 -7.83 -39.77 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.85 Total: 1.43 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.40 Total: -5.10 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.40 Total: -34.82 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -1.07 Total: -22.52 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.94 -7.83 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385343130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.218 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds