Wall clock time and date at job start Mon Mar 30 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99779 * 2 1 4 4 H 1.48505 * 109.46820 * 269.99457 * 3 2 1 5 5 H 1.48497 * 109.47142 * 29.99556 * 3 2 1 6 6 H 1.48498 * 109.47071 * 149.99613 * 3 2 1 7 7 C 1.37875 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99643 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.46608 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99883 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47279 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46958 * 66.29497 * 12 11 10 14 14 C 1.46842 * 111.00442 * 48.38766 * 13 12 11 15 15 C 1.53037 * 109.52628 * 174.15866 * 14 13 12 16 16 C 1.53120 * 109.27582 * 59.18271 * 15 14 13 17 17 C 1.53131 * 109.15909 * 302.34599 * 16 15 14 18 18 H 1.08996 * 109.49901 * 297.71186 * 17 16 15 19 19 C 1.52997 * 109.53278 * 177.61464 * 17 16 15 20 20 C 1.50704 * 109.47133 * 65.09843 * 19 17 16 21 21 O 1.20821 * 120.00232 * 359.97438 * 20 19 17 22 22 O 1.34231 * 119.99886 * 179.97438 * 20 19 17 23 23 C 1.46853 * 110.99770 * 284.17413 * 13 12 11 24 24 H 0.96994 * 120.00274 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47149 * 59.99793 * 9 7 2 26 26 H 1.08994 * 109.46847 * 299.99137 * 9 7 2 27 27 H 1.08997 * 109.47363 * 59.99046 * 11 10 9 28 28 H 1.09007 * 109.46789 * 299.99607 * 11 10 9 29 29 H 1.08992 * 109.47364 * 306.29478 * 12 11 10 30 30 H 1.09004 * 109.47268 * 186.29124 * 12 11 10 31 31 H 1.09000 * 109.46196 * 294.18359 * 14 13 12 32 32 H 1.09009 * 109.45938 * 54.15732 * 14 13 12 33 33 H 1.08995 * 109.50358 * 179.11783 * 15 14 13 34 34 H 1.09001 * 109.50362 * 299.20363 * 15 14 13 35 35 H 1.08995 * 109.52552 * 182.44069 * 16 15 14 36 36 H 1.09003 * 109.52434 * 62.24858 * 16 15 14 37 37 H 1.09004 * 109.46962 * 185.09599 * 19 17 16 38 38 H 1.08998 * 109.47700 * 305.09805 * 19 17 16 39 39 H 0.96701 * 116.99915 * 179.97438 * 22 20 19 40 40 H 1.09001 * 109.45748 * 65.82593 * 23 13 12 41 41 H 1.08995 * 109.45748 * 305.85760 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5653 -4.8754 0.0000 12 6 2.6482 -5.9561 -0.0006 13 7 3.3882 -5.9085 1.2675 14 6 2.4691 -5.8634 2.4119 15 6 3.2678 -5.9614 3.7136 16 6 4.2606 -4.7979 3.7863 17 6 5.1747 -4.8397 2.5585 18 1 5.7485 -5.7664 2.5635 19 6 6.1315 -3.6463 2.5922 20 6 7.0538 -3.7752 3.7771 21 8 6.9557 -4.7239 4.5187 22 8 7.9845 -2.8359 4.0084 23 6 4.3208 -4.7742 1.2903 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 0.9453 -4.9822 -0.8901 28 1 0.9449 -4.9827 0.8898 29 1 3.3350 -5.7818 -0.8288 30 1 2.1839 -6.9358 -0.1137 31 1 1.9147 -4.9250 2.3956 32 1 1.7714 -6.6986 2.3503 33 1 2.5867 -5.9121 4.5631 34 1 3.8111 -6.9061 3.7370 35 1 4.8616 -4.8879 4.6911 36 1 3.7153 -3.8542 3.8025 37 1 6.7194 -3.6259 1.6746 38 1 5.5582 -2.7231 2.6769 39 1 8.5526 -2.9617 4.7808 40 1 3.7577 -3.8410 1.2794 41 1 4.9676 -4.8184 0.4142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385343130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:46 Heat of formation + Delta-G solvation = -174.472499 kcal Electronic energy + Delta-G solvation = -21927.346729 eV Core-core repulsion = 18612.621303 eV Total energy + Delta-G solvation = -3314.725427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.44604 -40.26505 -38.28480 -37.09833 -35.47067 -34.70763 -33.03527 -30.40893 -29.10646 -28.37440 -25.38414 -24.52294 -23.79808 -22.93482 -21.32118 -20.49643 -19.00696 -18.61267 -17.54582 -17.37706 -17.21638 -16.88336 -16.50858 -16.20869 -15.72733 -15.32378 -15.19255 -14.70156 -14.53468 -14.04440 -13.81453 -13.52994 -13.36980 -13.06931 -13.00436 -12.84884 -12.70348 -12.66707 -12.45108 -12.23493 -12.03211 -11.87743 -11.77685 -11.58244 -11.31107 -11.19477 -10.98241 -10.85183 -10.21818 -9.13550 -8.32563 -6.44756 1.25151 1.39692 1.41856 1.53650 2.16534 2.33199 2.97900 3.01818 3.29317 3.73411 3.85382 4.00581 4.18394 4.22664 4.25287 4.31604 4.50515 4.51458 4.60378 4.61478 4.66161 4.74001 4.81741 4.87128 4.93943 4.97609 5.05661 5.10572 5.14190 5.17893 5.28871 5.34638 5.54496 5.55785 5.69327 5.95357 6.17877 6.19354 6.52094 6.80375 7.05442 7.27231 8.79734 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.006052 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.009079 B = 4625.578663 C = 6159.677024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.979 3.021 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.211 3.789 10 O -0.393 6.393 11 C 0.014 3.986 12 C 0.066 3.934 13 N -0.527 5.527 14 C 0.050 3.950 15 C -0.106 4.106 16 C -0.122 4.122 17 C -0.062 4.062 18 H 0.082 0.918 19 C -0.113 4.113 20 C 0.489 3.511 21 O -0.541 6.541 22 O -0.516 6.516 23 C 0.056 3.944 24 H 0.269 0.731 25 H -0.020 1.020 26 H -0.023 1.023 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.015 0.985 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.426 0.574 40 H 0.044 0.956 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.564 -10.076 5.861 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.802 3.198 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.136 3.864 10 O -0.312 6.312 11 C -0.064 4.064 12 C -0.062 4.062 13 N -0.250 5.250 14 C -0.078 4.078 15 C -0.144 4.144 16 C -0.159 4.159 17 C -0.081 4.081 18 H 0.100 0.900 19 C -0.151 4.151 20 C 0.333 3.667 21 O -0.431 6.431 22 O -0.330 6.330 23 C -0.072 4.072 24 H 0.078 0.922 25 H -0.002 1.002 26 H -0.005 1.005 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.033 0.967 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.287 0.713 40 H 0.062 0.938 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.617 -10.577 5.763 16.735 hybrid contribution -0.694 1.592 0.354 1.773 sum 10.923 -8.984 6.117 15.410 Atomic orbital electron populations 1.70077 1.07866 1.28534 1.50742 1.25951 0.95870 1.03395 0.94064 0.85242 0.78586 0.77184 0.78829 1.19375 1.20342 1.18367 1.21350 0.94143 0.90465 1.51775 0.91542 1.19759 0.88692 0.85125 0.92845 1.87860 1.34559 1.13884 1.94942 1.23400 0.97881 0.85451 0.99702 1.22351 0.94504 0.96870 0.92516 1.62241 1.18154 1.42406 1.02173 1.22165 0.94704 0.99881 0.91054 1.21494 0.97803 0.98951 0.96161 1.21737 0.97455 0.98245 0.98497 1.20897 0.95117 0.97335 0.94709 0.89971 1.21437 0.96302 1.01686 0.95685 1.23533 0.78781 0.78605 0.85783 1.90671 1.70084 1.33447 1.48935 1.84534 1.46013 1.50043 1.52365 1.22216 0.94775 0.93058 0.97175 0.92191 1.00228 1.00493 0.93978 0.94177 0.89938 0.86872 0.96659 0.89667 0.90888 0.90701 0.90858 0.93942 0.85643 0.87732 0.71252 0.93824 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 2 C 0.01 0.31 5.46 84.65 0.46 0.78 16 3 Si 0.98 43.53 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.54 -31.21 9.43 25.60 0.24 -30.96 16 8 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 9 C 0.21 11.64 5.69 71.24 0.41 12.05 16 10 O -0.39 -18.13 7.55 -148.98 -1.13 -19.25 16 11 C 0.01 0.51 5.52 71.98 0.40 0.90 16 12 C 0.07 1.84 6.01 86.30 0.52 2.35 16 13 N -0.53 -15.14 4.86 -896.36 -4.36 -19.50 16 14 C 0.05 1.42 4.49 86.33 0.39 1.80 16 15 C -0.11 -2.73 6.09 30.65 0.19 -2.55 16 16 C -0.12 -3.40 5.00 30.68 0.15 -3.25 16 17 C -0.06 -1.64 2.00 -10.74 -0.02 -1.66 16 18 H 0.08 2.19 7.96 -2.39 -0.02 2.17 16 19 C -0.11 -2.65 5.29 29.85 0.16 -2.49 16 20 C 0.49 11.28 8.06 71.24 0.57 11.86 16 21 O -0.54 -15.09 14.74 21.98 0.32 -14.77 16 22 O -0.52 -9.27 13.42 -51.43 -0.69 -9.96 16 23 C 0.06 1.69 4.24 86.32 0.37 2.06 16 24 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 25 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 26 H -0.02 -1.34 8.14 -2.39 -0.02 -1.35 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.46 6.05 -2.38 -0.01 1.45 16 29 H 0.08 2.28 7.87 -2.39 -0.02 2.26 16 30 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.02 0.53 6.45 -2.39 -0.02 0.52 16 32 H 0.08 2.09 8.12 -2.38 -0.02 2.08 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.08 6.03 -2.39 -0.01 2.06 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.13 2.44 8.14 -2.38 -0.02 2.42 16 38 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.43 3.80 9.10 -74.06 -0.67 3.12 16 40 H 0.04 1.68 5.80 -2.39 -0.01 1.66 16 41 H 0.08 2.16 7.96 -2.39 -0.02 2.14 16 Total: -1.00 -68.97 326.75 0.64 -68.33 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.34 Total: 14.24 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 3.83 Total: -9.11 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -4.07 Total: -75.05 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.49 Total: -43.98 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -68.97 0.64 -68.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385343130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.139 kcal (2) G-P(sol) polarization free energy of solvation -68.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds