Wall clock time and date at job start Mon Mar 30 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99726 * 2 1 4 4 H 1.48500 * 109.46911 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46931 * 119.99990 * 3 2 1 6 6 H 1.48495 * 109.47283 * 239.99747 * 3 2 1 7 7 C 1.37876 * 120.00581 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99785 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99913 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47185 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47069 * 62.32223 * 12 11 10 14 14 C 1.46846 * 111.00252 * 52.03652 * 13 12 11 15 15 C 1.53033 * 109.52767 * 185.83879 * 14 13 12 16 16 C 1.53120 * 109.27701 * 300.81865 * 15 14 13 17 17 C 1.53119 * 109.15961 * 57.65347 * 16 15 14 18 18 H 1.09007 * 109.50748 * 62.28684 * 17 16 15 19 19 C 1.53002 * 109.53411 * 182.38197 * 17 16 15 20 20 C 1.50695 * 109.47338 * 294.82355 * 19 17 16 21 21 O 1.20830 * 119.99826 * 359.97438 * 20 19 17 22 22 O 1.34226 * 120.00092 * 180.02562 * 20 19 17 23 23 C 1.46846 * 110.99907 * 176.24448 * 13 12 11 24 24 H 0.96991 * 120.00295 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47033 * 300.00015 * 9 7 2 26 26 H 1.09002 * 109.46361 * 60.00171 * 9 7 2 27 27 H 1.08995 * 109.47254 * 300.00655 * 11 10 9 28 28 H 1.08999 * 109.46686 * 59.99971 * 11 10 9 29 29 H 1.09000 * 109.47318 * 182.32033 * 12 11 10 30 30 H 1.09004 * 109.47265 * 302.32292 * 12 11 10 31 31 H 1.09008 * 109.46197 * 305.85839 * 14 13 12 32 32 H 1.09000 * 109.46392 * 65.81749 * 14 13 12 33 33 H 1.08995 * 109.50370 * 180.87375 * 15 14 13 34 34 H 1.09002 * 109.53107 * 60.77885 * 15 14 13 35 35 H 1.08992 * 109.52097 * 297.74847 * 16 15 14 36 36 H 1.09004 * 109.57385 * 177.58685 * 16 15 14 37 37 H 1.09003 * 109.46705 * 54.82459 * 19 17 16 38 38 H 1.09001 * 109.47000 * 174.82122 * 19 17 16 39 39 H 0.96696 * 116.99975 * 179.97438 * 22 20 19 40 40 H 1.09007 * 109.46443 * 294.17468 * 23 13 12 41 41 H 1.09001 * 109.46676 * 54.14643 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 2.1798 -3.5852 0.0015 11 6 1.5653 -4.8754 0.0031 12 6 2.6483 -5.9561 0.0033 13 7 3.4502 -5.8454 1.2292 14 6 2.5914 -5.8286 2.4202 15 6 3.4453 -5.5669 3.6629 16 6 4.5037 -6.6661 3.7896 17 6 5.3537 -6.6944 2.5163 18 1 5.8746 -5.7434 2.4051 19 6 6.3761 -7.8289 2.6088 20 6 7.3471 -7.5404 3.7246 21 8 7.2333 -6.5307 4.3784 22 8 8.3389 -8.4046 3.9914 23 6 4.4444 -6.9233 1.3068 24 1 -0.4850 0.8399 0.0004 25 1 0.6249 -2.5564 0.8919 26 1 0.6242 -2.5575 -0.8881 27 1 0.9461 -4.9818 0.8938 28 1 0.9442 -4.9831 -0.8861 29 1 2.1802 -6.9396 -0.0370 30 1 3.2931 -5.8246 -0.8657 31 1 1.8458 -5.0398 2.3192 32 1 2.0900 -6.7912 2.5201 33 1 2.8097 -5.5699 4.5484 34 1 3.9360 -4.5980 3.5705 35 1 4.0133 -7.6305 3.9217 36 1 5.1420 -6.4612 4.6491 37 1 5.8599 -8.7677 2.8100 38 1 6.9183 -7.9071 1.6664 39 1 8.9369 -8.1763 4.7161 40 1 3.9344 -7.8810 1.4119 41 1 5.0449 -6.9298 0.3971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385343131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:49 Heat of formation + Delta-G solvation = -147.751611 kcal Electronic energy + Delta-G solvation = -21205.365979 eV Core-core repulsion = 17891.799258 eV Total energy + Delta-G solvation = -3313.566722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65141 -39.03086 -36.77330 -36.25516 -34.23450 -32.61098 -32.03589 -29.23894 -27.72169 -26.68435 -24.16291 -22.92031 -22.25139 -21.74366 -20.18728 -19.64556 -18.25677 -16.79421 -16.34311 -16.17947 -16.15352 -15.55296 -14.91481 -14.42314 -14.28646 -14.09246 -13.96883 -13.86787 -13.15459 -12.86277 -12.78142 -12.33363 -12.17949 -11.98270 -11.71144 -11.64081 -11.14944 -11.01940 -10.90953 -10.79537 -10.72641 -10.61682 -10.51087 -10.17145 -10.08546 -9.83140 -9.03999 -8.73368 -8.09383 -7.99158 -6.04924 -4.05772 1.99852 2.78887 3.37313 3.39271 3.44016 4.02704 4.40556 4.55713 4.64053 4.80301 4.96173 5.11610 5.16413 5.20764 5.31513 5.31574 5.42435 5.45353 5.55616 5.62615 5.66336 5.77188 5.85978 5.93326 6.08170 6.11080 6.11606 6.22230 6.31807 6.34066 6.45853 6.56469 7.15502 7.33367 7.35704 7.49115 7.67275 7.87008 8.22979 8.67568 9.08829 9.58963 11.06767 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.003686 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.471675 B = 7595.292674 C = 8266.587532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.378 6.378 11 C 0.060 3.940 12 C 0.063 3.937 13 N -0.522 5.522 14 C 0.052 3.948 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.076 4.076 18 H 0.093 0.907 19 C -0.108 4.108 20 C 0.477 3.523 21 O -0.506 6.506 22 O -0.523 6.523 23 C 0.064 3.936 24 H 0.263 0.737 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.024 0.976 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.408 0.592 40 H 0.029 0.971 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.674 -19.772 6.070 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.297 6.297 11 C -0.018 4.018 12 C -0.064 4.064 13 N -0.246 5.246 14 C -0.076 4.076 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.095 4.095 18 H 0.111 0.889 19 C -0.146 4.146 20 C 0.319 3.681 21 O -0.393 6.393 22 O -0.335 6.335 23 C -0.065 4.065 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.267 0.733 40 H 0.047 0.953 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.651 -18.980 5.900 22.550 hybrid contribution -0.045 0.202 0.482 0.525 sum 10.607 -18.778 6.382 22.491 Atomic orbital electron populations 1.69951 1.06103 1.27152 1.50876 1.24941 0.94950 0.99385 0.95260 0.86407 0.79306 0.81963 0.78872 1.21250 1.19993 1.20039 1.21034 0.94088 0.89344 1.50392 0.91532 1.20171 0.88846 0.83951 0.95050 1.87974 1.34534 1.12227 1.94999 1.22348 0.93989 0.86448 0.98983 1.22125 0.95440 0.95851 0.93020 1.61731 1.16243 1.44724 1.01919 1.22201 0.95504 0.99982 0.89876 1.21531 0.97183 0.99867 0.96633 1.21766 0.97593 0.98635 0.97796 1.21054 0.94677 0.98160 0.95564 0.88881 1.21426 0.95192 1.01944 0.96087 1.23569 0.79870 0.80362 0.84320 1.90739 1.71774 1.27174 1.49589 1.84539 1.41391 1.52052 1.55505 1.22041 0.94410 0.92203 0.97813 0.92702 0.97993 0.98039 0.94382 0.94272 0.94605 0.90065 0.89494 0.95817 0.91788 0.90453 0.93008 0.90483 0.87843 0.87475 0.73296 0.95279 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.35 29.54 -169.99 -5.02 17.33 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -15.38 9.43 -34.44 -0.32 -15.71 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.43 5.69 36.01 0.20 5.64 16 10 O -0.38 -9.30 10.23 -35.23 -0.36 -9.66 16 11 C 0.06 1.13 5.57 37.15 0.21 1.34 16 12 C 0.06 0.96 5.52 -3.83 -0.02 0.93 16 13 N -0.52 -7.96 4.67 -234.67 -1.10 -9.06 16 14 C 0.05 0.77 5.04 -3.84 -0.02 0.75 16 15 C -0.11 -1.58 6.09 -26.65 -0.16 -1.74 16 16 C -0.12 -1.42 5.00 -26.61 -0.13 -1.55 16 17 C -0.08 -0.84 1.99 -90.54 -0.18 -1.02 16 18 H 0.09 1.28 7.95 -51.92 -0.41 0.86 16 19 C -0.11 -0.87 5.29 -27.88 -0.15 -1.02 16 20 C 0.48 4.55 8.06 36.00 0.29 4.84 16 21 O -0.51 -6.62 14.74 -18.75 -0.28 -6.89 16 22 O -0.52 -3.71 13.42 -39.25 -0.53 -4.24 16 23 C 0.06 0.73 4.74 -3.83 -0.02 0.71 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 26 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.04 0.69 6.05 -51.93 -0.31 0.38 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.09 1.49 5.79 -51.92 -0.30 1.19 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.98 6.04 -51.93 -0.31 0.67 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.41 1.34 9.10 45.56 0.41 1.75 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -34.66 331.98 -7.91 -42.57 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -5.97 Total: -3.06 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -0.40 Total: -5.29 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.36 Total: -35.75 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.16 Total: -20.80 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.66 -7.91 -42.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385343131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.185 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds