Wall clock time and date at job start Mon Mar 30 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99726 * 2 1 4 4 H 1.48500 * 109.46911 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46931 * 119.99990 * 3 2 1 6 6 H 1.48495 * 109.47283 * 239.99747 * 3 2 1 7 7 C 1.37876 * 120.00581 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99785 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99913 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47185 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47069 * 62.32223 * 12 11 10 14 14 C 1.46846 * 111.00252 * 52.03652 * 13 12 11 15 15 C 1.53033 * 109.52767 * 185.83879 * 14 13 12 16 16 C 1.53120 * 109.27701 * 300.81865 * 15 14 13 17 17 C 1.53119 * 109.15961 * 57.65347 * 16 15 14 18 18 H 1.09007 * 109.50748 * 62.28684 * 17 16 15 19 19 C 1.53002 * 109.53411 * 182.38197 * 17 16 15 20 20 C 1.50695 * 109.47338 * 294.82355 * 19 17 16 21 21 O 1.20830 * 119.99826 * 359.97438 * 20 19 17 22 22 O 1.34226 * 120.00092 * 180.02562 * 20 19 17 23 23 C 1.46846 * 110.99907 * 176.24448 * 13 12 11 24 24 H 0.96991 * 120.00295 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47033 * 300.00015 * 9 7 2 26 26 H 1.09002 * 109.46361 * 60.00171 * 9 7 2 27 27 H 1.08995 * 109.47254 * 300.00655 * 11 10 9 28 28 H 1.08999 * 109.46686 * 59.99971 * 11 10 9 29 29 H 1.09000 * 109.47318 * 182.32033 * 12 11 10 30 30 H 1.09004 * 109.47265 * 302.32292 * 12 11 10 31 31 H 1.09008 * 109.46197 * 305.85839 * 14 13 12 32 32 H 1.09000 * 109.46392 * 65.81749 * 14 13 12 33 33 H 1.08995 * 109.50370 * 180.87375 * 15 14 13 34 34 H 1.09002 * 109.53107 * 60.77885 * 15 14 13 35 35 H 1.08992 * 109.52097 * 297.74847 * 16 15 14 36 36 H 1.09004 * 109.57385 * 177.58685 * 16 15 14 37 37 H 1.09003 * 109.46705 * 54.82459 * 19 17 16 38 38 H 1.09001 * 109.47000 * 174.82122 * 19 17 16 39 39 H 0.96696 * 116.99975 * 179.97438 * 22 20 19 40 40 H 1.09007 * 109.46443 * 294.17468 * 23 13 12 41 41 H 1.09001 * 109.46676 * 54.14643 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 2.1798 -3.5852 0.0015 11 6 1.5653 -4.8754 0.0031 12 6 2.6483 -5.9561 0.0033 13 7 3.4502 -5.8454 1.2292 14 6 2.5914 -5.8286 2.4202 15 6 3.4453 -5.5669 3.6629 16 6 4.5037 -6.6661 3.7896 17 6 5.3537 -6.6944 2.5163 18 1 5.8746 -5.7434 2.4051 19 6 6.3761 -7.8289 2.6088 20 6 7.3471 -7.5404 3.7246 21 8 7.2333 -6.5307 4.3784 22 8 8.3389 -8.4046 3.9914 23 6 4.4444 -6.9233 1.3068 24 1 -0.4850 0.8399 0.0004 25 1 0.6249 -2.5564 0.8919 26 1 0.6242 -2.5575 -0.8881 27 1 0.9461 -4.9818 0.8938 28 1 0.9442 -4.9831 -0.8861 29 1 2.1802 -6.9396 -0.0370 30 1 3.2931 -5.8246 -0.8657 31 1 1.8458 -5.0398 2.3192 32 1 2.0900 -6.7912 2.5201 33 1 2.8097 -5.5699 4.5484 34 1 3.9360 -4.5980 3.5705 35 1 4.0133 -7.6305 3.9217 36 1 5.1420 -6.4612 4.6491 37 1 5.8599 -8.7677 2.8100 38 1 6.9183 -7.9071 1.6664 39 1 8.9369 -8.1763 4.7161 40 1 3.9344 -7.8810 1.4119 41 1 5.0449 -6.9298 0.3971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385343131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:49 Heat of formation + Delta-G solvation = -173.509030 kcal Electronic energy + Delta-G solvation = -21206.482905 eV Core-core repulsion = 17891.799258 eV Total energy + Delta-G solvation = -3314.683647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41627 -40.09096 -38.38760 -37.09011 -35.46627 -34.72261 -33.06193 -30.66864 -29.01410 -28.36337 -25.34637 -24.45911 -23.86565 -22.75493 -21.24399 -20.60295 -18.95829 -18.60010 -17.61287 -17.41429 -17.33958 -16.89995 -16.45314 -15.96388 -15.65445 -15.36575 -15.12258 -14.96958 -14.57419 -14.02102 -13.83862 -13.66278 -13.48919 -13.05356 -12.99643 -12.85156 -12.75356 -12.52185 -12.38924 -12.26728 -12.01145 -11.88923 -11.74435 -11.54723 -11.28569 -11.18187 -10.98436 -10.82846 -10.15969 -9.07127 -8.31795 -6.43655 1.29865 1.38826 1.44010 1.52283 2.18848 2.35029 2.97847 3.01701 3.27936 3.73310 3.82564 3.96705 4.11524 4.15616 4.28734 4.34158 4.43966 4.50447 4.57601 4.62577 4.64481 4.67402 4.75854 4.82189 4.82990 4.93488 5.02062 5.05729 5.09787 5.19514 5.21724 5.38987 5.50075 5.55770 5.73598 5.97940 6.20844 6.32183 6.57707 6.87086 7.07289 7.28612 8.80434 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.003686 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.471675 B = 7595.292674 C = 8266.587532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.211 3.789 10 O -0.394 6.394 11 C 0.049 3.951 12 C 0.072 3.928 13 N -0.555 5.555 14 C 0.057 3.943 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.073 4.073 18 H 0.057 0.943 19 C -0.102 4.102 20 C 0.480 3.520 21 O -0.551 6.551 22 O -0.515 6.515 23 C 0.066 3.934 24 H 0.271 0.729 25 H -0.020 1.020 26 H -0.016 1.016 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.425 0.575 40 H 0.056 0.944 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.794 -21.519 5.794 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.136 3.864 10 O -0.314 6.314 11 C -0.028 4.028 12 C -0.055 4.055 13 N -0.280 5.280 14 C -0.071 4.071 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.092 4.092 18 H 0.075 0.925 19 C -0.139 4.139 20 C 0.324 3.676 21 O -0.442 6.442 22 O -0.329 6.329 23 C -0.061 4.061 24 H 0.080 0.920 25 H -0.002 1.002 26 H 0.002 0.998 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.286 0.714 40 H 0.075 0.925 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.792 -20.776 5.624 24.542 hybrid contribution -0.396 0.654 0.596 0.969 sum 11.396 -20.122 6.220 23.947 Atomic orbital electron populations 1.70055 1.07705 1.28668 1.50631 1.25943 0.95964 1.03314 0.93940 0.85261 0.78139 0.76838 0.79338 1.19766 1.19318 1.18891 1.21357 0.93985 0.91010 1.52085 0.92338 1.19758 0.88624 0.85024 0.93043 1.87924 1.34579 1.13833 1.95032 1.22729 0.95849 0.84784 0.99445 1.22049 0.94530 0.95721 0.93185 1.61661 1.17061 1.47455 1.01822 1.22074 0.94991 0.99874 0.90121 1.21510 0.97804 0.99057 0.96865 1.21696 0.96807 0.98674 0.97849 1.20944 0.95103 0.97996 0.95142 0.92457 1.21414 0.94437 1.01463 0.96614 1.23868 0.80062 0.79679 0.83964 1.90741 1.73021 1.29091 1.51313 1.84499 1.41066 1.51131 1.56183 1.22110 0.93659 0.92024 0.98356 0.92044 1.00188 0.99816 0.94187 0.93455 0.90904 0.89979 0.92963 0.93393 0.90895 0.94078 0.90530 0.91683 0.84917 0.85192 0.71390 0.92548 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.98 45.95 29.54 68.60 2.03 47.98 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -33.95 9.43 25.60 0.24 -33.71 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.21 12.32 5.69 71.24 0.41 12.73 16 10 O -0.39 -20.11 10.23 -148.98 -1.52 -21.63 16 11 C 0.05 1.86 5.57 71.98 0.40 2.26 16 12 C 0.07 2.08 5.52 86.30 0.48 2.56 16 13 N -0.55 -16.41 4.67 -896.35 -4.19 -20.60 16 14 C 0.06 1.67 5.04 86.32 0.44 2.10 16 15 C -0.11 -3.22 6.09 30.65 0.19 -3.04 16 16 C -0.11 -2.53 5.00 30.67 0.15 -2.38 16 17 C -0.07 -1.52 1.99 -10.74 -0.02 -1.54 16 18 H 0.06 1.61 7.95 -2.38 -0.02 1.59 16 19 C -0.10 -1.32 5.29 29.85 0.16 -1.16 16 20 C 0.48 8.33 8.06 71.23 0.57 8.90 16 21 O -0.55 -14.37 14.74 21.95 0.32 -14.05 16 22 O -0.52 -6.05 13.42 -51.38 -0.69 -6.74 16 23 C 0.07 1.34 4.74 86.33 0.41 1.75 16 24 H 0.27 15.47 8.31 -92.72 -0.77 14.70 16 25 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 26 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H 0.04 1.50 6.05 -2.39 -0.01 1.48 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.05 1.86 5.79 -2.38 -0.01 1.85 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.65 6.04 -2.38 -0.01 1.63 16 37 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.13 1.14 8.14 -2.39 -0.02 1.13 16 39 H 0.42 1.94 9.10 -74.06 -0.67 1.27 16 40 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.09 1.57 8.12 -2.39 -0.02 1.55 16 Total: -1.00 -77.69 331.98 0.46 -77.23 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 0.34 Total: 5.65 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 3.88 Total: -10.67 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -3.90 Total: -77.77 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -1.89 Total: -42.43 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -77.69 0.46 -77.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385343131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.275 kcal (2) G-P(sol) polarization free energy of solvation -77.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds