Wall clock time and date at job start Mon Mar 30 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99782 * 2 1 4 4 H 1.48493 * 109.47317 * 239.99157 * 3 2 1 5 5 H 1.48503 * 109.47414 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47097 * 119.99398 * 3 2 1 7 7 C 1.37870 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00327 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47302 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46975 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46752 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.47107 * 111.05840 * 293.61473 * 13 12 11 15 15 C 1.53104 * 109.27905 * 177.62654 * 14 13 12 16 16 O 1.43016 * 109.25493 * 56.85076 * 15 14 13 17 17 C 1.43013 * 113.74201 * 301.32706 * 16 15 14 18 18 H 1.09008 * 109.50640 * 298.73963 * 17 16 15 19 19 C 1.52999 * 109.51073 * 178.61098 * 17 16 15 20 20 C 1.50702 * 109.47217 * 65.21410 * 19 17 16 21 21 O 1.20826 * 119.99794 * 0.02562 * 20 19 17 22 22 O 1.34225 * 119.99931 * 180.02562 * 20 19 17 23 23 C 1.47018 * 111.00176 * 170.00206 * 13 12 11 24 24 H 0.96999 * 120.00330 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47238 * 59.99630 * 9 7 2 26 26 H 1.08997 * 109.47083 * 299.99977 * 9 7 2 27 27 H 1.09001 * 109.46870 * 60.00255 * 10 9 7 28 28 H 1.08997 * 109.47204 * 300.00113 * 10 9 7 29 29 H 1.09000 * 109.46537 * 60.00188 * 11 10 9 30 30 H 1.08997 * 109.47384 * 300.00171 * 11 10 9 31 31 H 1.08999 * 109.47720 * 60.00224 * 12 11 10 32 32 H 1.08997 * 109.47276 * 300.00189 * 12 11 10 33 33 H 1.08997 * 109.49376 * 57.68557 * 14 13 12 34 34 H 1.08996 * 109.53153 * 297.58944 * 14 13 12 35 35 H 1.08995 * 109.50506 * 296.91474 * 15 14 13 36 36 H 1.09001 * 109.54090 * 176.80257 * 15 14 13 37 37 H 1.08992 * 109.47784 * 185.21892 * 19 17 16 38 38 H 1.09009 * 109.46574 * 305.21798 * 19 17 16 39 39 H 0.96707 * 117.00101 * 180.02562 * 22 20 19 40 40 H 1.09002 * 109.50864 * 62.45469 * 23 13 12 41 41 H 1.09003 * 109.50425 * 302.37108 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2123 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 7 1.7403 -7.4221 0.0018 14 6 0.9993 -7.6047 1.2594 15 6 0.2036 -8.9110 1.1923 16 8 1.0984 -9.9952 0.9291 17 6 1.8354 -9.8510 -0.2879 18 1 1.1441 -9.8140 -1.1299 19 6 2.7827 -11.0407 -0.4557 20 6 1.9781 -12.3030 -0.6299 21 8 0.7707 -12.2557 -0.6214 22 8 2.6025 -13.4796 -0.7946 23 6 2.6476 -8.5543 -0.2359 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8906 28 1 2.8721 -3.6043 -0.8894 29 1 0.8535 -5.0450 -0.8886 30 1 0.8540 -5.0446 0.8913 31 1 3.1013 -6.0918 0.8918 32 1 3.1014 -6.0926 -0.8881 33 1 0.3148 -6.7686 1.4030 34 1 1.7006 -7.6481 2.0926 35 1 -0.5351 -8.8466 0.3934 36 1 -0.3021 -9.0792 2.1431 37 1 3.4095 -10.8853 -1.3337 38 1 3.4129 -11.1309 0.4292 39 1 2.0441 -14.2617 -0.9029 40 1 3.3758 -8.6132 0.5730 41 1 3.1669 -8.4117 -1.1835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385800743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:25 Heat of formation + Delta-G solvation = -153.770784 kcal Electronic energy + Delta-G solvation = -20646.323815 eV Core-core repulsion = 17332.496082 eV Total energy + Delta-G solvation = -3313.827733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68101 -39.57782 -36.65397 -36.22708 -34.18158 -33.32564 -32.16929 -29.46332 -28.83209 -26.26235 -24.04959 -23.93199 -21.93353 -20.81587 -20.46274 -19.99810 -18.32599 -17.00023 -16.86694 -16.30763 -16.19820 -15.73855 -15.39982 -14.92879 -14.66652 -14.48366 -14.15218 -13.87054 -13.25656 -12.87660 -12.66225 -12.51800 -12.16099 -11.95431 -11.77595 -11.63030 -11.45266 -11.36239 -10.94915 -10.87221 -10.73525 -10.52490 -10.47572 -10.35471 -9.76954 -9.61180 -9.24966 -9.01243 -8.41430 -8.32267 -5.97493 -3.99920 1.95773 2.66471 3.34082 3.38433 3.40803 3.47436 3.74109 4.44230 4.47550 4.57628 4.80761 4.87881 4.96613 4.98471 5.14402 5.18753 5.31697 5.37623 5.38790 5.45007 5.57411 5.67261 5.74544 5.85949 5.86692 6.11770 6.19474 6.20978 6.48976 6.78047 6.91357 6.93350 6.99765 7.03168 7.20943 7.61193 7.70685 7.86625 8.03300 8.45935 9.07349 9.63874 11.13804 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.056562 B = 0.002564 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.916146 B =10915.875884 C =11180.459870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.114 4.114 12 C 0.057 3.943 13 N -0.536 5.536 14 C 0.013 3.987 15 C 0.068 3.932 16 O -0.377 6.377 17 C 0.104 3.896 18 H 0.078 0.922 19 C -0.107 4.107 20 C 0.479 3.521 21 O -0.500 6.500 22 O -0.522 6.522 23 C 0.024 3.976 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.410 0.590 40 H 0.043 0.957 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.597 -25.018 -0.212 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.152 4.152 12 C -0.070 4.070 13 N -0.261 5.261 14 C -0.115 4.115 15 C -0.009 4.009 16 O -0.296 6.296 17 C 0.045 3.955 18 H 0.096 0.904 19 C -0.145 4.145 20 C 0.320 3.680 21 O -0.387 6.387 22 O -0.335 6.335 23 C -0.105 4.105 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.268 0.732 40 H 0.062 0.938 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.026 -24.670 -0.419 25.180 hybrid contribution 0.650 0.708 0.471 1.071 sum 5.676 -23.961 0.053 24.625 Atomic orbital electron populations 1.69956 1.06042 1.26652 1.50898 1.25033 0.94854 0.99231 0.95420 0.86667 0.79584 0.83212 0.78575 1.20264 1.21299 1.20291 1.21245 0.92961 0.91221 1.50496 0.92840 1.19081 0.94005 0.91306 0.97148 1.21599 0.99105 0.93944 1.00058 1.21673 0.97862 0.93527 1.02101 1.22268 0.96005 0.88093 1.00626 1.62248 1.27548 1.02109 1.34220 1.22898 0.98522 0.99376 0.90705 1.22653 0.91530 0.84869 1.01836 1.87963 1.56856 1.44520 1.40263 1.21867 0.92757 0.91551 0.89277 0.90438 1.21372 0.98360 0.88449 1.06271 1.23273 0.87362 0.85044 0.72274 1.90764 1.15849 1.86852 1.45218 1.84523 1.45852 1.18439 1.84660 1.22738 0.94669 0.90930 1.02128 0.92977 0.96611 0.96757 0.93698 0.93433 0.91597 0.92571 0.94904 0.90787 0.88714 0.94025 0.92054 0.88416 0.86033 0.86811 0.73157 0.93846 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.36 16 11 C -0.11 -1.92 5.15 -26.73 -0.14 -2.06 16 12 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 13 N -0.54 -6.79 4.73 -234.23 -1.11 -7.90 16 14 C 0.01 0.16 5.44 -3.66 -0.02 0.14 16 15 C 0.07 0.77 7.01 37.21 0.26 1.03 16 16 O -0.38 -4.63 9.72 -49.39 -0.48 -5.11 16 17 C 0.10 1.05 2.35 -26.68 -0.06 0.99 16 18 H 0.08 0.88 7.95 -51.92 -0.41 0.47 16 19 C -0.11 -0.77 5.53 -27.88 -0.15 -0.92 16 20 C 0.48 4.36 8.21 36.01 0.30 4.65 16 21 O -0.50 -6.45 16.19 -23.99 -0.39 -6.84 16 22 O -0.52 -3.41 13.42 -39.24 -0.53 -3.93 16 23 C 0.02 0.24 4.93 -3.71 -0.02 0.22 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.95 6.52 -51.93 -0.34 0.61 16 31 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 33 H 0.09 1.18 6.39 -51.93 -0.33 0.85 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.11 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.41 1.10 9.10 45.56 0.41 1.52 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 LS Contribution 336.30 15.07 5.07 5.07 Total: -1.00 -34.37 336.30 -8.38 -42.75 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -6.12 Total: -3.45 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.54 Total: -10.85 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: -0.37 Total: -34.44 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.40 Total: -15.88 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.37 -8.38 -42.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385800743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.023 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds