Wall clock time and date at job start Mon Mar 30 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99782 * 2 1 4 4 H 1.48493 * 109.47317 * 239.99157 * 3 2 1 5 5 H 1.48503 * 109.47414 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47097 * 119.99398 * 3 2 1 7 7 C 1.37870 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00327 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47302 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46975 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46752 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.47107 * 111.05840 * 293.61473 * 13 12 11 15 15 C 1.53104 * 109.27905 * 177.62654 * 14 13 12 16 16 O 1.43016 * 109.25493 * 56.85076 * 15 14 13 17 17 C 1.43013 * 113.74201 * 301.32706 * 16 15 14 18 18 H 1.09008 * 109.50640 * 298.73963 * 17 16 15 19 19 C 1.52999 * 109.51073 * 178.61098 * 17 16 15 20 20 C 1.50702 * 109.47217 * 65.21410 * 19 17 16 21 21 O 1.20826 * 119.99794 * 0.02562 * 20 19 17 22 22 O 1.34225 * 119.99931 * 180.02562 * 20 19 17 23 23 C 1.47018 * 111.00176 * 170.00206 * 13 12 11 24 24 H 0.96999 * 120.00330 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47238 * 59.99630 * 9 7 2 26 26 H 1.08997 * 109.47083 * 299.99977 * 9 7 2 27 27 H 1.09001 * 109.46870 * 60.00255 * 10 9 7 28 28 H 1.08997 * 109.47204 * 300.00113 * 10 9 7 29 29 H 1.09000 * 109.46537 * 60.00188 * 11 10 9 30 30 H 1.08997 * 109.47384 * 300.00171 * 11 10 9 31 31 H 1.08999 * 109.47720 * 60.00224 * 12 11 10 32 32 H 1.08997 * 109.47276 * 300.00189 * 12 11 10 33 33 H 1.08997 * 109.49376 * 57.68557 * 14 13 12 34 34 H 1.08996 * 109.53153 * 297.58944 * 14 13 12 35 35 H 1.08995 * 109.50506 * 296.91474 * 15 14 13 36 36 H 1.09001 * 109.54090 * 176.80257 * 15 14 13 37 37 H 1.08992 * 109.47784 * 185.21892 * 19 17 16 38 38 H 1.09009 * 109.46574 * 305.21798 * 19 17 16 39 39 H 0.96707 * 117.00101 * 180.02562 * 22 20 19 40 40 H 1.09002 * 109.50864 * 62.45469 * 23 13 12 41 41 H 1.09003 * 109.50425 * 302.37108 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2123 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 7 1.7403 -7.4221 0.0018 14 6 0.9993 -7.6047 1.2594 15 6 0.2036 -8.9110 1.1923 16 8 1.0984 -9.9952 0.9291 17 6 1.8354 -9.8510 -0.2879 18 1 1.1441 -9.8140 -1.1299 19 6 2.7827 -11.0407 -0.4557 20 6 1.9781 -12.3030 -0.6299 21 8 0.7707 -12.2557 -0.6214 22 8 2.6025 -13.4796 -0.7946 23 6 2.6476 -8.5543 -0.2359 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8906 28 1 2.8721 -3.6043 -0.8894 29 1 0.8535 -5.0450 -0.8886 30 1 0.8540 -5.0446 0.8913 31 1 3.1013 -6.0918 0.8918 32 1 3.1014 -6.0926 -0.8881 33 1 0.3148 -6.7686 1.4030 34 1 1.7006 -7.6481 2.0926 35 1 -0.5351 -8.8466 0.3934 36 1 -0.3021 -9.0792 2.1431 37 1 3.4095 -10.8853 -1.3337 38 1 3.4129 -11.1309 0.4292 39 1 2.0441 -14.2617 -0.9029 40 1 3.3758 -8.6132 0.5730 41 1 3.1669 -8.4117 -1.1835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385800743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:25 Heat of formation + Delta-G solvation = -178.224752 kcal Electronic energy + Delta-G solvation = -20647.384218 eV Core-core repulsion = 17332.496082 eV Total energy + Delta-G solvation = -3314.888136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40719 -40.42003 -37.68304 -36.99756 -35.89429 -34.19916 -33.93294 -30.77020 -29.94359 -27.63867 -25.58881 -24.81736 -23.14551 -21.93283 -21.48293 -21.35597 -18.98767 -18.42120 -17.75777 -17.55200 -17.24187 -16.63972 -16.50409 -16.39673 -15.79292 -15.63986 -15.35504 -14.95264 -14.47156 -13.94811 -13.88667 -13.61207 -13.46935 -13.23722 -13.03846 -12.81023 -12.59828 -12.46094 -12.34430 -12.25374 -12.21697 -11.89368 -11.65279 -11.52890 -11.33508 -11.25400 -11.05980 -10.57223 -10.54244 -9.36733 -8.19308 -6.30957 1.29629 1.39877 1.43294 1.51229 2.10909 2.41263 2.69588 2.84255 3.13344 3.73420 3.82728 3.96948 3.99884 4.11153 4.18610 4.25610 4.43633 4.46701 4.52720 4.56406 4.62093 4.68137 4.70160 4.77412 4.85926 4.88774 4.98841 5.02615 5.22279 5.28493 5.36484 5.55618 5.68311 5.78088 5.87375 5.96706 6.02590 6.17279 6.26283 6.86767 7.05317 7.38408 8.92377 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.056562 B = 0.002564 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.916146 B =10915.875884 C =11180.459870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.095 4.095 11 C -0.104 4.104 12 C 0.069 3.931 13 N -0.551 5.551 14 C 0.016 3.984 15 C 0.070 3.930 16 O -0.392 6.392 17 C 0.101 3.899 18 H 0.059 0.941 19 C -0.102 4.102 20 C 0.482 3.518 21 O -0.548 6.548 22 O -0.515 6.515 23 C 0.026 3.974 24 H 0.263 0.737 25 H -0.012 1.012 26 H -0.012 1.012 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.112 0.888 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.426 0.574 40 H 0.053 0.947 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.022 -25.631 -0.323 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.142 4.142 12 C -0.059 4.059 13 N -0.276 5.276 14 C -0.113 4.113 15 C -0.007 4.007 16 O -0.311 6.311 17 C 0.043 3.957 18 H 0.077 0.923 19 C -0.139 4.139 20 C 0.326 3.674 21 O -0.438 6.438 22 O -0.329 6.329 23 C -0.101 4.101 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.006 0.994 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.173 0.827 38 H 0.149 0.851 39 H 0.287 0.713 40 H 0.071 0.929 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.481 -25.325 -0.535 26.413 hybrid contribution -0.137 0.823 0.488 0.967 sum 7.344 -24.502 -0.047 25.579 Atomic orbital electron populations 1.70100 1.07888 1.27822 1.51747 1.26036 0.95801 1.03535 0.94783 0.85482 0.78248 0.77954 0.79255 1.19045 1.20915 1.19084 1.21720 0.93599 0.92478 1.50440 0.92064 1.19018 0.94533 0.93375 0.94506 1.21391 0.97926 0.93475 1.00569 1.21493 0.98090 0.93295 1.01337 1.22049 0.94936 0.87401 1.01480 1.62178 1.28358 1.02526 1.34532 1.22857 0.98429 0.99290 0.90683 1.22655 0.91272 0.84559 1.02218 1.87951 1.57135 1.44798 1.41234 1.21966 0.92798 0.93048 0.87875 0.92277 1.21455 0.97673 0.86296 1.08524 1.23625 0.86815 0.86048 0.70924 1.90756 1.17862 1.87553 1.47617 1.84489 1.45880 1.18571 1.83915 1.22808 0.94274 0.89594 1.03473 0.92801 0.99347 0.99398 0.93122 0.92763 0.92748 0.93089 0.94351 0.89568 0.89757 0.93789 0.93127 0.87041 0.82694 0.85146 0.71266 0.92883 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.00 13.29 21.44 0.28 -57.71 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.23 4.97 29.85 0.15 1.37 16 10 C -0.10 -3.88 5.15 30.60 0.16 -3.72 16 11 C -0.10 -3.50 5.15 30.59 0.16 -3.34 16 12 C 0.07 1.77 4.96 86.30 0.43 2.20 16 13 N -0.55 -13.21 4.73 -894.97 -4.23 -17.44 16 14 C 0.02 0.37 5.44 86.30 0.47 0.83 16 15 C 0.07 1.57 7.01 72.02 0.50 2.07 16 16 O -0.39 -9.30 9.72 -135.44 -1.32 -10.62 16 17 C 0.10 1.90 2.35 30.63 0.07 1.98 16 18 H 0.06 1.32 7.95 -2.38 -0.02 1.31 16 19 C -0.10 -1.21 5.53 29.85 0.16 -1.04 16 20 C 0.48 8.02 8.21 71.24 0.58 8.60 16 21 O -0.55 -13.99 16.19 26.97 0.44 -13.55 16 22 O -0.51 -5.60 13.42 -51.37 -0.69 -6.29 16 23 C 0.03 0.47 4.93 86.31 0.43 0.89 16 24 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.75 6.52 -2.39 -0.02 1.73 16 31 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 32 H 0.09 2.03 8.04 -2.39 -0.02 2.01 16 33 H 0.08 2.12 6.39 -2.39 -0.02 2.11 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.43 1.54 9.10 -74.05 -0.67 0.86 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 1.48 8.09 -2.39 -0.02 1.46 16 Total: -1.00 -75.02 336.30 0.65 -74.37 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 0.33 Total: 5.78 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 3.81 Total: -21.15 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -3.95 Total: -75.15 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.57 Total: -30.46 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -75.02 0.65 -74.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385800743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.852 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds