Wall clock time and date at job start Mon Mar 30 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 112.93508 * 2 1 4 4 C 1.42899 * 113.99778 * 48.43566 * 3 2 1 5 5 C 1.50699 * 109.46785 * 179.97438 * 4 3 2 6 6 O 1.20824 * 120.00157 * 359.97438 * 5 4 3 7 7 O 1.34231 * 119.99682 * 179.97438 * 5 4 3 8 8 C 1.53929 * 113.83100 * 131.65851 * 2 1 3 9 9 N 1.47957 * 86.18223 * 90.65398 * 8 2 1 10 10 C 1.46900 * 111.00525 * 137.57907 * 9 8 2 11 11 C 1.53007 * 109.46596 * 70.64189 * 10 9 8 12 12 C 1.53000 * 109.47186 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47510 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47451 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99964 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00394 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00194 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99798 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47171 * 89.99963 * 18 16 14 20 20 H 1.48496 * 109.47371 * 210.00280 * 18 16 14 21 21 H 1.48500 * 109.47201 * 330.00347 * 18 16 14 22 22 C 1.47969 * 90.76237 * 24.68959 * 9 8 2 23 23 H 1.09007 * 109.47081 * 69.67081 * 1 2 3 24 24 H 1.09002 * 109.46947 * 189.66529 * 1 2 3 25 25 H 1.08997 * 109.47607 * 309.66116 * 1 2 3 26 26 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 27 27 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 28 28 H 0.96707 * 116.99837 * 180.02562 * 7 5 4 29 29 H 1.09003 * 113.75828 * 204.97169 * 8 2 1 30 30 H 1.08997 * 113.76032 * 336.33703 * 8 2 1 31 31 H 1.08994 * 109.47527 * 190.63678 * 10 9 8 32 32 H 1.09002 * 109.47252 * 310.64636 * 10 9 8 33 33 H 1.09005 * 109.47212 * 299.99923 * 11 10 9 34 34 H 1.08999 * 109.47432 * 60.00393 * 11 10 9 35 35 H 1.09000 * 109.46812 * 300.00429 * 12 11 10 36 36 H 1.09002 * 109.47100 * 59.99370 * 12 11 10 37 37 H 1.08996 * 109.47279 * 300.00535 * 13 12 11 38 38 H 1.09002 * 109.46602 * 60.00064 * 13 12 11 39 39 H 0.97001 * 119.99709 * 179.97438 * 17 16 14 40 40 H 1.09002 * 113.75573 * 220.99457 * 22 9 8 41 41 H 1.08999 * 113.75379 * 89.63254 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0869 1.3161 0.0000 4 6 1.5157 2.1888 0.9768 5 6 2.1743 3.5414 0.8881 6 8 3.0438 3.7377 0.0726 7 8 1.7947 4.5281 1.7153 8 6 2.1519 -0.9359 1.0520 9 7 2.1275 -1.9744 -0.0016 10 6 3.3738 -2.7520 -0.0035 11 6 3.4224 -3.6404 1.2412 12 6 4.7207 -4.4499 1.2397 13 6 4.7697 -5.3378 2.4847 14 6 6.0482 -6.1356 2.4829 15 1 6.7554 -6.0205 1.6748 16 6 6.3152 -7.0124 3.5128 17 7 7.4311 -7.7082 3.5115 18 14 5.0924 -7.2111 4.9109 19 1 4.1273 -8.2885 4.5751 20 1 5.8182 -7.5672 6.1565 21 1 4.3595 -5.9354 5.1126 22 6 2.1496 -0.9348 -1.0544 23 1 -0.3633 0.3570 -0.9637 24 1 -0.3633 -1.0131 0.1725 25 1 -0.3634 0.6559 0.7911 26 1 0.4466 2.2920 0.7910 27 1 1.6730 1.7730 1.9719 28 1 2.2458 5.3783 1.6205 29 1 3.1566 -0.6454 1.3591 30 1 1.4935 -1.1492 1.8941 31 1 3.4117 -3.3756 -0.8966 32 1 4.2261 -2.0724 0.0016 33 1 3.3845 -3.0168 2.1345 34 1 2.5702 -4.3200 1.2361 35 1 4.7591 -5.0734 0.3465 36 1 5.5728 -3.7701 1.2450 37 1 4.7315 -4.7140 3.3777 38 1 3.9177 -6.0177 2.4797 39 1 7.6191 -8.3248 4.2363 40 1 1.4893 -1.1473 -1.8952 41 1 3.1536 -0.6441 -1.3634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385806722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:20 Heat of formation + Delta-G solvation = -112.172072 kcal Electronic energy + Delta-G solvation = -20554.473805 eV Core-core repulsion = 17242.449928 eV Total energy + Delta-G solvation = -3312.023877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98064 -40.35935 -37.44144 -36.40259 -34.92897 -32.62417 -31.05477 -29.22489 -28.83665 -26.53711 -25.89803 -23.38327 -22.09101 -21.08327 -20.02930 -19.58022 -18.46151 -17.31971 -17.05005 -16.78213 -16.63759 -15.80552 -15.41514 -15.02878 -14.47022 -14.20233 -14.14026 -13.67511 -13.56224 -12.91163 -12.76669 -12.59985 -12.46288 -12.25914 -11.98792 -11.87115 -11.59089 -11.42032 -11.15534 -10.93791 -10.76659 -10.74620 -10.47436 -9.99882 -9.87272 -9.66983 -9.45995 -9.13673 -8.99610 -8.51221 -6.01777 -3.99395 1.76745 2.10116 3.32456 3.39413 3.43655 3.47656 3.77289 4.03614 4.42053 4.47617 4.61641 4.66736 4.70091 4.75454 4.99913 5.18481 5.25138 5.30869 5.33588 5.37638 5.44684 5.55015 5.67294 5.74720 5.79042 5.94189 6.03936 6.04761 6.20508 6.44831 6.64442 6.66406 6.75555 6.85683 7.01473 7.35227 7.46862 7.48174 7.83199 8.57512 9.03609 9.61142 11.11898 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.002933 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.944969 B = 9543.604451 C = 9900.233511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.080 3.920 3 O -0.352 6.352 4 C 0.068 3.932 5 C 0.478 3.522 6 O -0.494 6.494 7 O -0.516 6.516 8 C -0.018 4.018 9 N -0.472 5.472 10 C 0.023 3.977 11 C -0.115 4.115 12 C -0.102 4.102 13 C -0.013 4.013 14 C -0.520 4.520 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.021 3.979 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.416 0.584 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.014 0.986 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.098 0.902 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.076 22.471 -5.579 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 O -0.271 6.271 4 C -0.010 4.010 5 C 0.319 3.681 6 O -0.380 6.380 7 O -0.329 6.329 8 C -0.147 4.147 9 N -0.195 5.195 10 C -0.105 4.105 11 C -0.153 4.153 12 C -0.140 4.140 13 C -0.051 4.051 14 C -0.558 4.558 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.107 4.107 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.276 0.724 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.271 21.557 -5.807 28.227 hybrid contribution 0.432 0.784 0.916 1.281 sum -16.839 22.341 -4.890 28.401 Atomic orbital electron populations 1.22075 0.92534 1.04299 1.02688 1.23664 0.94190 0.80272 0.97830 1.88061 1.61527 1.21871 1.55621 1.21605 0.97991 0.86110 0.95290 1.22994 0.80812 0.86495 0.77795 1.90772 1.29578 1.82240 1.35373 1.84457 1.64905 1.24659 1.58910 1.24637 1.01673 0.91728 0.96691 1.68543 1.34747 1.13411 1.02843 1.22754 0.89793 0.97209 1.00736 1.21634 0.99947 0.98028 0.95643 1.21429 0.94600 0.97757 1.00207 1.19560 0.97244 0.94812 0.93452 1.21191 1.03750 1.22163 1.08691 0.91124 1.25053 0.95225 0.95336 0.98045 1.69923 1.24543 1.26889 1.33130 0.86752 0.81564 0.78895 0.81913 1.20302 1.21450 1.19049 1.24139 1.01584 0.89203 0.95797 0.91250 0.89451 0.91811 0.88441 0.88646 0.72433 0.90111 0.88885 0.90319 0.93933 0.92727 0.91666 0.92773 0.93026 0.96819 0.97098 0.92798 0.88370 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.80 37.16 0.33 -0.78 16 2 C 0.08 0.75 1.43 -89.69 -0.13 0.62 16 3 O -0.35 -3.76 9.84 -55.19 -0.54 -4.30 16 4 C 0.07 0.51 5.87 36.01 0.21 0.72 16 5 C 0.48 4.30 8.40 36.01 0.30 4.60 16 6 O -0.49 -6.52 17.26 -25.48 -0.44 -6.96 16 7 O -0.52 -3.02 13.42 -39.26 -0.53 -3.55 16 8 C -0.02 -0.19 6.44 -2.77 -0.02 -0.21 16 9 N -0.47 -5.60 6.12 -238.20 -1.46 -7.06 16 10 C 0.02 0.32 4.82 -3.82 -0.02 0.30 16 11 C -0.11 -1.85 5.28 -26.73 -0.14 -1.99 16 12 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 13 C -0.01 -0.32 4.04 -27.89 -0.11 -0.44 16 14 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.45 13.96 55.43 0.77 -27.67 16 18 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 22 C 0.02 0.22 7.38 -2.76 -0.02 0.20 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.66 8.00 -51.93 -0.42 0.24 16 25 H 0.06 0.34 6.27 -51.93 -0.33 0.01 16 26 H 0.10 0.50 6.40 -51.93 -0.33 0.17 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.42 0.77 9.10 45.56 0.41 1.19 16 29 H 0.08 0.94 7.78 -51.93 -0.40 0.53 16 30 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 33 H 0.05 0.87 7.54 -51.93 -0.39 0.48 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 38 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.08 0.90 7.79 -51.93 -0.40 0.49 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -35.23 338.26 -7.92 -43.15 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.99 Total: -3.29 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.17 Total: -12.85 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.68 Total: -34.74 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.51 Total: -14.81 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.23 -7.92 -43.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385806722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.024 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds