Wall clock time and date at job start Mon Mar 30 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 112.93508 * 2 1 4 4 C 1.42899 * 113.99778 * 48.43566 * 3 2 1 5 5 C 1.50699 * 109.46785 * 179.97438 * 4 3 2 6 6 O 1.20824 * 120.00157 * 359.97438 * 5 4 3 7 7 O 1.34231 * 119.99682 * 179.97438 * 5 4 3 8 8 C 1.53929 * 113.83100 * 131.65851 * 2 1 3 9 9 N 1.47957 * 86.18223 * 90.65398 * 8 2 1 10 10 C 1.46900 * 111.00525 * 137.57907 * 9 8 2 11 11 C 1.53007 * 109.46596 * 70.64189 * 10 9 8 12 12 C 1.53000 * 109.47186 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47510 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47451 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99964 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00394 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00194 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99798 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47171 * 89.99963 * 18 16 14 20 20 H 1.48496 * 109.47371 * 210.00280 * 18 16 14 21 21 H 1.48500 * 109.47201 * 330.00347 * 18 16 14 22 22 C 1.47969 * 90.76237 * 24.68959 * 9 8 2 23 23 H 1.09007 * 109.47081 * 69.67081 * 1 2 3 24 24 H 1.09002 * 109.46947 * 189.66529 * 1 2 3 25 25 H 1.08997 * 109.47607 * 309.66116 * 1 2 3 26 26 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 27 27 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 28 28 H 0.96707 * 116.99837 * 180.02562 * 7 5 4 29 29 H 1.09003 * 113.75828 * 204.97169 * 8 2 1 30 30 H 1.08997 * 113.76032 * 336.33703 * 8 2 1 31 31 H 1.08994 * 109.47527 * 190.63678 * 10 9 8 32 32 H 1.09002 * 109.47252 * 310.64636 * 10 9 8 33 33 H 1.09005 * 109.47212 * 299.99923 * 11 10 9 34 34 H 1.08999 * 109.47432 * 60.00393 * 11 10 9 35 35 H 1.09000 * 109.46812 * 300.00429 * 12 11 10 36 36 H 1.09002 * 109.47100 * 59.99370 * 12 11 10 37 37 H 1.08996 * 109.47279 * 300.00535 * 13 12 11 38 38 H 1.09002 * 109.46602 * 60.00064 * 13 12 11 39 39 H 0.97001 * 119.99709 * 179.97438 * 17 16 14 40 40 H 1.09002 * 113.75573 * 220.99457 * 22 9 8 41 41 H 1.08999 * 113.75379 * 89.63254 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0869 1.3161 0.0000 4 6 1.5157 2.1888 0.9768 5 6 2.1743 3.5414 0.8881 6 8 3.0438 3.7377 0.0726 7 8 1.7947 4.5281 1.7153 8 6 2.1519 -0.9359 1.0520 9 7 2.1275 -1.9744 -0.0016 10 6 3.3738 -2.7520 -0.0035 11 6 3.4224 -3.6404 1.2412 12 6 4.7207 -4.4499 1.2397 13 6 4.7697 -5.3378 2.4847 14 6 6.0482 -6.1356 2.4829 15 1 6.7554 -6.0205 1.6748 16 6 6.3152 -7.0124 3.5128 17 7 7.4311 -7.7082 3.5115 18 14 5.0924 -7.2111 4.9109 19 1 4.1273 -8.2885 4.5751 20 1 5.8182 -7.5672 6.1565 21 1 4.3595 -5.9354 5.1126 22 6 2.1496 -0.9348 -1.0544 23 1 -0.3633 0.3570 -0.9637 24 1 -0.3633 -1.0131 0.1725 25 1 -0.3634 0.6559 0.7911 26 1 0.4466 2.2920 0.7910 27 1 1.6730 1.7730 1.9719 28 1 2.2458 5.3783 1.6205 29 1 3.1566 -0.6454 1.3591 30 1 1.4935 -1.1492 1.8941 31 1 3.4117 -3.3756 -0.8966 32 1 4.2261 -2.0724 0.0016 33 1 3.3845 -3.0168 2.1345 34 1 2.5702 -4.3200 1.2361 35 1 4.7591 -5.0734 0.3465 36 1 5.5728 -3.7701 1.2450 37 1 4.7315 -4.7140 3.3777 38 1 3.9177 -6.0177 2.4797 39 1 7.6191 -8.3248 4.2363 40 1 1.4893 -1.1473 -1.8952 41 1 3.1536 -0.6441 -1.3634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385806722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:19 Heat of formation + Delta-G solvation = -138.928915 kcal Electronic energy + Delta-G solvation = -20555.634069 eV Core-core repulsion = 17242.449928 eV Total energy + Delta-G solvation = -3313.184141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.72729 -41.07568 -38.21812 -37.09728 -36.49234 -34.55428 -32.36256 -30.13076 -29.81493 -27.43354 -27.17905 -24.74344 -22.86655 -22.26775 -21.73535 -20.32104 -19.11778 -18.86969 -18.01125 -17.77351 -17.41773 -16.77871 -16.38321 -16.25342 -15.84467 -15.40799 -15.08190 -14.81989 -14.43167 -14.26093 -14.09036 -13.79523 -13.48560 -13.32842 -12.96956 -12.82693 -12.69436 -12.63203 -12.40047 -12.31222 -11.97891 -11.76190 -11.67569 -11.46257 -11.34988 -11.32431 -11.14752 -10.77049 -10.65617 -9.92220 -8.30259 -6.34789 1.11286 1.35707 1.37835 1.50318 1.54855 2.36314 2.77576 2.98830 3.05020 3.32269 3.79053 3.83656 4.01082 4.07492 4.14867 4.17873 4.25383 4.42196 4.45981 4.50510 4.58430 4.64367 4.74348 4.75559 4.84851 4.90791 4.99172 5.11668 5.13851 5.21633 5.25453 5.33834 5.54715 5.55556 5.63035 5.67714 5.94562 6.04430 6.28360 6.73586 6.93683 7.30124 8.86891 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.002933 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.944969 B = 9543.604451 C = 9900.233511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.090 3.910 3 O -0.379 6.379 4 C 0.061 3.939 5 C 0.484 3.516 6 O -0.547 6.547 7 O -0.505 6.505 8 C -0.023 4.023 9 N -0.475 5.475 10 C 0.030 3.970 11 C -0.101 4.101 12 C -0.096 4.096 13 C -0.011 4.011 14 C -0.537 4.537 15 H 0.028 0.972 16 C 0.000 4.000 17 N -0.954 5.954 18 Si 0.956 3.044 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.245 1.245 22 C 0.015 3.985 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.433 0.567 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.112 0.888 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.236 23.684 -4.394 31.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 O -0.298 6.298 4 C -0.016 4.016 5 C 0.327 3.673 6 O -0.437 6.437 7 O -0.319 6.319 8 C -0.152 4.152 9 N -0.198 5.198 10 C -0.098 4.098 11 C -0.139 4.139 12 C -0.134 4.134 13 C -0.048 4.048 14 C -0.575 4.575 15 H 0.046 0.954 16 C -0.197 4.197 17 N -0.595 5.595 18 Si 0.779 3.221 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.169 1.169 22 C -0.113 4.113 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.145 0.855 27 H 0.132 0.868 28 H 0.296 0.704 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.130 0.870 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.455 22.808 -4.617 30.982 hybrid contribution 1.490 0.466 0.513 1.643 sum -18.965 23.274 -4.103 30.301 Atomic orbital electron populations 1.22074 0.90352 1.04736 1.03996 1.23601 0.95487 0.79633 0.96183 1.88026 1.62606 1.22497 1.56719 1.21907 0.99208 0.84935 0.95520 1.23340 0.79735 0.87334 0.76893 1.90759 1.32005 1.83208 1.37681 1.84427 1.64594 1.25268 1.57653 1.24705 1.01465 0.91812 0.97210 1.68523 1.33182 1.14107 1.04036 1.22583 0.90768 0.97050 0.99445 1.21435 0.97412 0.97903 0.97146 1.21305 0.96728 0.97382 0.97999 1.19524 0.94721 0.94978 0.95596 1.21572 1.05094 1.23151 1.07639 0.95365 1.26108 0.97428 0.94799 1.01330 1.70083 1.26951 1.27944 1.34512 0.85574 0.78886 0.79965 0.77712 1.18990 1.20908 1.16868 1.24213 1.01527 0.89264 0.96332 0.90508 0.89732 0.89653 0.85458 0.86763 0.70432 0.91462 0.87536 0.90313 0.94471 0.92200 0.91383 0.93361 0.93848 0.96317 0.96275 0.92481 0.86956 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.80 71.98 0.63 -1.02 16 2 C 0.09 1.50 1.43 -10.15 -0.01 1.49 16 3 O -0.38 -7.51 9.84 -129.90 -1.28 -8.78 16 4 C 0.06 0.77 5.87 71.24 0.42 1.19 16 5 C 0.48 7.98 8.40 71.24 0.60 8.58 16 6 O -0.55 -14.37 17.26 28.40 0.49 -13.88 16 7 O -0.50 -4.80 13.42 -51.43 -0.69 -5.49 16 8 C -0.02 -0.44 6.44 86.40 0.56 0.11 16 9 N -0.48 -10.48 6.12 -910.74 -5.57 -16.05 16 10 C 0.03 0.79 4.82 86.31 0.42 1.20 16 11 C -0.10 -3.10 5.28 30.60 0.16 -2.94 16 12 C -0.10 -3.81 5.15 30.59 0.16 -3.65 16 13 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 14 C -0.54 -32.02 9.66 25.60 0.25 -31.77 16 15 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 16 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 17 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 18 Si 0.96 44.98 27.47 68.60 1.88 46.86 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 22 C 0.02 0.29 7.38 86.40 0.64 0.93 16 23 H 0.08 0.73 8.14 -2.38 -0.02 0.72 16 24 H 0.08 1.00 8.00 -2.39 -0.02 0.98 16 25 H 0.08 0.54 6.27 -2.39 -0.01 0.52 16 26 H 0.13 0.82 6.40 -2.39 -0.02 0.81 16 27 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.43 0.80 9.10 -74.05 -0.67 0.13 16 29 H 0.07 1.49 7.78 -2.39 -0.02 1.47 16 30 H 0.11 1.75 8.10 -2.39 -0.02 1.73 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.01 7.69 -2.39 -0.02 0.99 16 33 H 0.06 1.78 7.54 -2.38 -0.02 1.76 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 38 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 39 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 40 H 0.11 1.82 8.10 -2.39 -0.02 1.80 16 41 H 0.07 1.51 7.79 -2.39 -0.02 1.49 16 Total: -1.00 -77.72 338.26 -0.19 -77.91 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 0.28 Total: 6.27 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: 4.40 Total: -25.83 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -5.27 Total: -77.06 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -1.48 Total: -28.15 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -77.72 -0.19 -77.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385806722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.019 kcal (2) G-P(sol) polarization free energy of solvation -77.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds