Wall clock time and date at job start Mon Mar 30 2020 05:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47186 * 2 1 4 4 C 1.50703 * 109.46939 * 239.99889 * 2 1 3 5 5 H 1.07995 * 120.00236 * 245.46020 * 4 2 1 6 6 C 1.37879 * 119.99727 * 65.46208 * 4 2 1 7 7 N 1.31516 * 120.00007 * 9.55158 * 6 4 2 8 8 Si 1.86796 * 119.99889 * 189.55354 * 6 4 2 9 9 H 1.48497 * 109.47543 * 84.99515 * 8 6 4 10 10 H 1.48504 * 109.47171 * 204.99367 * 8 6 4 11 11 H 1.48501 * 109.47046 * 324.98934 * 8 6 4 12 12 N 1.46907 * 109.47353 * 120.00129 * 2 1 3 13 13 C 1.46896 * 110.99924 * 274.99914 * 12 2 1 14 14 H 1.09003 * 109.60297 * 34.79488 * 13 12 2 15 15 C 1.53171 * 109.53632 * 274.59869 * 13 12 2 16 16 C 1.53093 * 109.11991 * 183.14793 * 15 13 12 17 17 O 1.42855 * 109.44288 * 57.61713 * 16 15 13 18 18 C 1.43262 * 114.01845 * 298.55895 * 17 16 15 19 19 C 1.53197 * 109.02809 * 180.50012 * 18 17 16 20 20 C 1.55091 * 109.01131 * 90.07452 * 19 18 17 21 21 S 1.83968 * 100.86778 * 41.70268 * 20 19 18 22 22 C 1.53946 * 108.67237 * 303.08234 * 18 17 16 23 23 C 1.53130 * 109.53602 * 154.99597 * 13 12 2 24 24 H 1.09000 * 109.46613 * 303.67392 * 1 2 3 25 25 H 1.08993 * 109.47375 * 63.67213 * 1 2 3 26 26 H 1.08997 * 109.47361 * 183.67751 * 1 2 3 27 27 H 0.97003 * 119.99555 * 180.02562 * 7 6 4 28 28 H 1.00901 * 110.99365 * 38.95153 * 12 2 1 29 29 H 1.09002 * 109.53496 * 63.25037 * 15 13 12 30 30 H 1.09001 * 109.59201 * 303.07200 * 15 13 12 31 31 H 1.08996 * 109.47010 * 297.62722 * 16 15 13 32 32 H 1.08999 * 109.48043 * 177.60952 * 16 15 13 33 33 H 1.08996 * 109.59784 * 210.02202 * 19 18 17 34 34 H 1.08998 * 109.59760 * 330.32104 * 19 18 17 35 35 H 1.09008 * 111.14110 * 159.60395 * 20 19 18 36 36 H 1.08997 * 111.13880 * 283.80027 * 20 19 18 37 37 H 1.08997 * 110.31642 * 1.23287 * 22 18 17 38 38 H 1.09000 * 110.32150 * 123.42983 * 22 18 17 39 39 H 1.09003 * 109.52763 * 57.20898 * 23 13 12 40 40 H 1.08995 * 109.53648 * 296.99272 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5785 -1.6371 -1.1339 6 6 1.7945 -0.1774 -2.4796 7 7 1.2991 1.0356 -2.5935 8 14 2.1759 -1.1780 -4.0102 9 1 1.0241 -2.0610 -4.3242 10 1 2.4226 -0.2613 -5.1522 11 1 3.3845 -2.0071 -3.7710 12 7 2.0197 -0.6925 1.1995 13 6 2.0826 0.2225 2.3469 14 1 1.2606 0.9362 2.2909 15 6 3.4165 0.9752 2.3293 16 6 3.5053 1.8671 3.5705 17 8 3.3702 1.0637 4.7440 18 6 2.1167 0.3767 4.8392 19 6 2.0894 -0.4351 6.1381 20 6 1.5027 0.4454 7.2720 21 16 0.1165 1.2710 6.3880 22 6 0.9805 1.4136 4.7772 23 6 1.9771 -0.5790 3.6474 24 1 -0.3632 0.5698 0.8553 25 1 -0.3634 0.4557 -0.9210 26 1 -0.3634 -1.0255 0.0659 27 1 1.1315 1.4104 -3.4723 28 1 1.4496 -1.4979 1.4100 29 1 3.4752 1.5919 1.4324 30 1 4.2395 0.2606 2.3345 31 1 2.7065 2.6081 3.5433 32 1 4.4705 2.3734 3.5859 33 1 1.4673 -1.3199 6.0032 34 1 3.1029 -0.7377 6.4014 35 1 1.1346 -0.1672 8.0950 36 1 2.2341 1.1733 7.6229 37 1 1.3895 2.4164 4.6545 38 1 0.2985 1.1794 3.9598 39 1 2.7727 -1.3234 3.6822 40 1 1.0086 -1.0770 3.6911 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390614789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:22 Heat of formation + Delta-G solvation = -51.980850 kcal Electronic energy + Delta-G solvation = -19841.785368 eV Core-core repulsion = 16975.124449 eV Total energy + Delta-G solvation = -2866.660919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15724 -36.29795 -34.62344 -33.24076 -31.14831 -30.11364 -28.56975 -27.03176 -25.15441 -24.17780 -23.46473 -21.03003 -19.93145 -19.14364 -17.08173 -16.44468 -16.32249 -15.46281 -15.27262 -14.85409 -14.68840 -14.43114 -13.85094 -13.16829 -13.03277 -12.96473 -12.74538 -12.22753 -12.08893 -11.84326 -11.71735 -11.67439 -11.48626 -11.29684 -10.96074 -10.91082 -10.63330 -10.36509 -10.29059 -10.18509 -10.11694 -9.76934 -9.33148 -9.03983 -8.35192 -7.82423 -7.32843 -6.03241 -4.02593 1.71653 2.18182 3.31592 3.37961 3.41446 3.67394 4.26207 4.39805 4.47934 4.69486 4.89323 4.96362 5.04640 5.16748 5.27263 5.29194 5.30192 5.38485 5.48179 5.54133 5.60516 5.68585 5.86355 5.88307 5.97648 6.11371 6.25586 6.45620 6.56955 6.67470 6.71906 6.98835 7.21286 7.30063 7.55525 7.86300 8.18353 8.49195 8.57739 9.03830 9.61249 11.06071 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.035945 B = 0.004352 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.784423 B = 6431.770197 C = 6633.072027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.210 3.790 3 H 0.041 0.959 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.677 5.677 13 C 0.087 3.913 14 H 0.037 0.963 15 C -0.140 4.140 16 C 0.055 3.945 17 O -0.373 6.373 18 C 0.120 3.880 19 C -0.112 4.112 20 C -0.066 4.066 21 S -0.299 6.299 22 C -0.096 4.096 23 C -0.139 4.139 24 H 0.008 0.992 25 H 0.071 0.929 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.325 0.675 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 -0.150 17.104 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.103 3.897 3 H 0.059 0.941 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.307 5.307 13 C -0.023 4.023 14 H 0.055 0.945 15 C -0.179 4.179 16 C -0.022 4.022 17 O -0.292 6.292 18 C 0.078 3.922 19 C -0.150 4.150 20 C -0.214 4.214 21 S -0.073 6.073 22 C -0.244 4.244 23 C -0.178 4.178 24 H 0.027 0.973 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.791 0.396 17.285 17.308 hybrid contribution 0.007 -0.524 -1.444 1.536 sum 0.798 -0.127 15.841 15.861 Atomic orbital electron populations 1.22395 1.01213 0.98516 1.00138 1.19223 0.88956 0.94993 0.86572 0.94125 1.21088 1.34614 1.08233 0.89681 0.92004 1.24938 0.95597 0.94731 0.99002 1.69963 1.45732 1.14053 1.23709 0.86597 0.78691 0.80050 0.82578 1.20740 1.21458 1.19922 1.60854 1.58053 1.08686 1.03082 1.21464 0.96160 0.94576 0.90141 0.94497 1.22183 0.98814 0.99366 0.97515 1.22737 1.01710 0.92895 0.84821 1.88024 1.34967 1.63398 1.42835 1.22211 0.83402 0.90695 0.95847 1.22347 1.03469 0.98193 0.91008 1.24327 0.96884 1.00495 0.99663 1.87799 1.26122 1.81311 1.12103 1.24875 0.99620 1.03369 0.96537 1.22492 1.03021 0.98426 0.93814 0.97310 0.91003 0.95133 0.93046 0.85763 0.90368 0.90582 0.93183 0.88720 0.88932 0.88770 0.87535 0.88877 0.88184 0.87396 0.89895 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 9.03 37.16 0.34 -3.43 16 2 C 0.21 5.10 2.25 -68.86 -0.16 4.94 16 3 H 0.04 1.10 7.12 -51.93 -0.37 0.73 16 4 C -0.50 -13.52 8.76 -34.44 -0.30 -13.82 16 5 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 6 C 0.06 1.60 5.17 -17.82 -0.09 1.51 16 7 N -0.90 -25.50 12.16 55.43 0.67 -24.83 16 8 Si 0.89 21.30 29.55 -169.99 -5.02 16.28 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.68 -13.65 6.04 -100.79 -0.61 -14.26 16 13 C 0.09 1.45 2.10 -67.56 -0.14 1.31 16 14 H 0.04 0.66 5.61 -51.93 -0.29 0.37 16 15 C -0.14 -2.26 5.62 -26.59 -0.15 -2.41 16 16 C 0.06 0.73 6.48 37.21 0.24 0.97 16 17 O -0.37 -5.03 10.15 -35.23 -0.36 -5.38 16 18 C 0.12 1.47 1.01 -89.82 -0.09 1.38 16 19 C -0.11 -1.12 5.50 -25.52 -0.14 -1.26 16 20 C -0.07 -0.62 7.52 38.26 0.29 -0.33 16 21 S -0.30 -3.70 23.22 -107.50 -2.50 -6.20 16 22 C -0.10 -1.22 5.53 37.65 0.21 -1.01 16 23 C -0.14 -1.89 3.81 -26.46 -0.10 -1.99 16 24 H 0.01 0.17 7.48 -51.93 -0.39 -0.22 16 25 H 0.07 1.85 6.83 -51.93 -0.35 1.49 16 26 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.33 6.21 8.06 -39.29 -0.32 5.90 16 29 H 0.08 1.41 7.51 -51.93 -0.39 1.02 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.64 6.05 -51.93 -0.31 0.33 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 0.85 7.85 -51.93 -0.41 0.44 16 34 H 0.09 0.88 8.06 -51.93 -0.42 0.46 16 35 H 0.11 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.27 6.04 -51.93 -0.31 0.96 16 38 H 0.11 1.46 6.48 -51.93 -0.34 1.12 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -28.54 315.38 -9.56 -38.10 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.40 Total: 5.67 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.10 Total: -14.13 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.07 Total: -39.09 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.36 Total: -5.38 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -2.50 Total: -6.20 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.54 -9.56 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390614789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.885 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds