Wall clock time and date at job start Mon Mar 30 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47186 * 2 1 4 4 C 1.50703 * 109.46939 * 239.99889 * 2 1 3 5 5 H 1.07995 * 120.00236 * 245.46020 * 4 2 1 6 6 C 1.37879 * 119.99727 * 65.46208 * 4 2 1 7 7 N 1.31516 * 120.00007 * 9.55158 * 6 4 2 8 8 Si 1.86796 * 119.99889 * 189.55354 * 6 4 2 9 9 H 1.48497 * 109.47543 * 84.99515 * 8 6 4 10 10 H 1.48504 * 109.47171 * 204.99367 * 8 6 4 11 11 H 1.48501 * 109.47046 * 324.98934 * 8 6 4 12 12 N 1.46907 * 109.47353 * 120.00129 * 2 1 3 13 13 C 1.46896 * 110.99924 * 274.99914 * 12 2 1 14 14 H 1.09003 * 109.60297 * 34.79488 * 13 12 2 15 15 C 1.53171 * 109.53632 * 274.59869 * 13 12 2 16 16 C 1.53093 * 109.11991 * 183.14793 * 15 13 12 17 17 O 1.42855 * 109.44288 * 57.61713 * 16 15 13 18 18 C 1.43262 * 114.01845 * 298.55895 * 17 16 15 19 19 C 1.53197 * 109.02809 * 180.50012 * 18 17 16 20 20 C 1.55091 * 109.01131 * 90.07452 * 19 18 17 21 21 S 1.83968 * 100.86778 * 41.70268 * 20 19 18 22 22 C 1.53946 * 108.67237 * 303.08234 * 18 17 16 23 23 C 1.53130 * 109.53602 * 154.99597 * 13 12 2 24 24 H 1.09000 * 109.46613 * 303.67392 * 1 2 3 25 25 H 1.08993 * 109.47375 * 63.67213 * 1 2 3 26 26 H 1.08997 * 109.47361 * 183.67751 * 1 2 3 27 27 H 0.97003 * 119.99555 * 180.02562 * 7 6 4 28 28 H 1.00901 * 110.99365 * 38.95153 * 12 2 1 29 29 H 1.09002 * 109.53496 * 63.25037 * 15 13 12 30 30 H 1.09001 * 109.59201 * 303.07200 * 15 13 12 31 31 H 1.08996 * 109.47010 * 297.62722 * 16 15 13 32 32 H 1.08999 * 109.48043 * 177.60952 * 16 15 13 33 33 H 1.08996 * 109.59784 * 210.02202 * 19 18 17 34 34 H 1.08998 * 109.59760 * 330.32104 * 19 18 17 35 35 H 1.09008 * 111.14110 * 159.60395 * 20 19 18 36 36 H 1.08997 * 111.13880 * 283.80027 * 20 19 18 37 37 H 1.08997 * 110.31642 * 1.23287 * 22 18 17 38 38 H 1.09000 * 110.32150 * 123.42983 * 22 18 17 39 39 H 1.09003 * 109.52763 * 57.20898 * 23 13 12 40 40 H 1.08995 * 109.53648 * 296.99272 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5785 -1.6371 -1.1339 6 6 1.7945 -0.1774 -2.4796 7 7 1.2991 1.0356 -2.5935 8 14 2.1759 -1.1780 -4.0102 9 1 1.0241 -2.0610 -4.3242 10 1 2.4226 -0.2613 -5.1522 11 1 3.3845 -2.0071 -3.7710 12 7 2.0197 -0.6925 1.1995 13 6 2.0826 0.2225 2.3469 14 1 1.2606 0.9362 2.2909 15 6 3.4165 0.9752 2.3293 16 6 3.5053 1.8671 3.5705 17 8 3.3702 1.0637 4.7440 18 6 2.1167 0.3767 4.8392 19 6 2.0894 -0.4351 6.1381 20 6 1.5027 0.4454 7.2720 21 16 0.1165 1.2710 6.3880 22 6 0.9805 1.4136 4.7772 23 6 1.9771 -0.5790 3.6474 24 1 -0.3632 0.5698 0.8553 25 1 -0.3634 0.4557 -0.9210 26 1 -0.3634 -1.0255 0.0659 27 1 1.1315 1.4104 -3.4723 28 1 1.4496 -1.4979 1.4100 29 1 3.4752 1.5919 1.4324 30 1 4.2395 0.2606 2.3345 31 1 2.7065 2.6081 3.5433 32 1 4.4705 2.3734 3.5859 33 1 1.4673 -1.3199 6.0032 34 1 3.1029 -0.7377 6.4014 35 1 1.1346 -0.1672 8.0950 36 1 2.2341 1.1733 7.6229 37 1 1.3895 2.4164 4.6545 38 1 0.2985 1.1794 3.9598 39 1 2.7727 -1.3234 3.6822 40 1 1.0086 -1.0770 3.6911 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390614789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:21 Heat of formation + Delta-G solvation = -69.779277 kcal Electronic energy + Delta-G solvation = -19842.557165 eV Core-core repulsion = 16975.124449 eV Total energy + Delta-G solvation = -2867.432717 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27547 -37.90452 -35.57863 -35.02338 -32.86826 -31.09787 -29.92059 -28.42570 -27.20998 -25.20143 -24.67509 -22.50831 -21.45024 -20.31296 -18.47695 -17.88835 -17.51259 -16.81974 -16.57183 -16.39077 -15.83507 -15.75045 -15.16175 -14.69776 -14.42204 -14.08712 -13.86025 -13.81858 -13.55738 -13.20247 -12.98798 -12.87875 -12.83032 -12.61526 -12.47714 -12.37069 -12.30330 -12.13130 -12.02164 -11.54593 -11.23787 -11.11968 -10.99194 -10.46871 -10.44329 -9.01069 -8.77898 -8.13178 -6.19926 0.81083 1.31190 1.42209 1.42984 1.52739 2.43372 2.66138 3.17282 3.28411 3.43186 3.65565 3.74525 3.95736 4.02397 4.11526 4.15344 4.24748 4.31971 4.42739 4.56737 4.63919 4.68510 4.70209 4.75766 4.81127 4.84624 4.89630 4.98230 5.00570 5.14141 5.18679 5.30248 5.44466 5.62685 5.76049 6.14778 6.22787 6.65231 6.85044 6.94286 7.48560 8.94868 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.035945 B = 0.004352 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.784423 B = 6431.770197 C = 6633.072027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.218 3.782 3 H 0.006 0.994 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.681 5.681 13 C 0.087 3.913 14 H 0.026 0.974 15 C -0.137 4.137 16 C 0.063 3.937 17 O -0.374 6.374 18 C 0.121 3.879 19 C -0.109 4.109 20 C -0.051 4.051 21 S -0.333 6.333 22 C -0.092 4.092 23 C -0.128 4.128 24 H 0.026 0.974 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.260 0.740 28 H 0.332 0.668 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.521 -1.266 18.710 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.109 3.891 3 H 0.024 0.976 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.311 5.311 13 C -0.023 4.023 14 H 0.044 0.956 15 C -0.175 4.175 16 C -0.014 4.014 17 O -0.294 6.294 18 C 0.080 3.920 19 C -0.147 4.147 20 C -0.198 4.198 21 S -0.108 6.108 22 C -0.241 4.241 23 C -0.167 4.167 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.150 0.850 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.167 -0.729 18.913 18.963 hybrid contribution -0.094 -0.162 -1.895 1.904 sum 1.073 -0.891 17.018 17.075 Atomic orbital electron populations 1.22209 1.00351 0.99107 0.99346 1.18926 0.89439 0.93108 0.87597 0.97571 1.21408 1.34655 1.08101 0.91173 0.92744 1.25682 0.95549 0.95569 1.01860 1.70080 1.46656 1.15348 1.24279 0.85621 0.78679 0.78636 0.79000 1.19996 1.21227 1.19485 1.60717 1.57823 1.09304 1.03238 1.21520 0.96033 0.94291 0.90496 0.95587 1.22122 0.98198 0.99224 0.97993 1.22689 1.03019 0.92289 0.83441 1.88033 1.35558 1.63422 1.42354 1.22342 0.82815 0.90341 0.96542 1.22368 1.04587 0.98111 0.89672 1.24447 0.95333 1.00349 0.99696 1.87940 1.28185 1.82088 1.12538 1.24772 0.99507 1.03323 0.96456 1.22401 1.03622 0.98260 0.92439 0.95510 0.93940 0.94055 0.93068 0.84973 0.93153 0.91357 0.92761 0.86823 0.87751 0.87466 0.85038 0.88283 0.88534 0.88666 0.89678 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.02 9.03 71.98 0.65 -6.37 16 2 C 0.22 10.80 2.25 44.17 0.10 10.90 16 3 H 0.01 0.36 7.12 -2.39 -0.02 0.34 16 4 C -0.51 -28.36 8.76 25.60 0.22 -28.14 16 5 H 0.05 3.02 7.83 -2.91 -0.02 2.99 16 6 C 0.01 0.66 5.17 84.65 0.44 1.09 16 7 N -0.92 -53.66 12.16 21.45 0.26 -53.39 16 8 Si 0.95 43.88 29.55 68.60 2.03 45.91 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.68 -27.57 6.04 -472.78 -2.86 -30.42 16 13 C 0.09 2.89 2.10 45.02 0.09 2.98 16 14 H 0.03 0.94 5.61 -2.39 -0.01 0.92 16 15 C -0.14 -4.45 5.62 30.68 0.17 -4.28 16 16 C 0.06 1.60 6.48 72.01 0.47 2.06 16 17 O -0.37 -9.31 10.15 -148.98 -1.51 -10.82 16 18 C 0.12 2.73 1.01 -10.27 -0.01 2.72 16 19 C -0.11 -1.82 5.50 31.38 0.17 -1.65 16 20 C -0.05 -0.80 7.52 72.70 0.55 -0.25 16 21 S -0.33 -7.67 23.22 -56.49 -1.31 -8.98 16 22 C -0.09 -2.25 5.53 72.30 0.40 -1.85 16 23 C -0.13 -3.29 3.81 30.77 0.12 -3.17 16 24 H 0.03 1.10 7.48 -2.39 -0.02 1.09 16 25 H 0.04 2.21 6.83 -2.39 -0.02 2.20 16 26 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 27 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.33 12.49 8.06 -89.69 -0.72 11.77 16 29 H 0.05 1.90 7.51 -2.39 -0.02 1.88 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 1.35 6.05 -2.39 -0.01 1.34 16 32 H 0.11 2.47 8.14 -2.39 -0.02 2.46 16 33 H 0.10 1.54 7.85 -2.39 -0.02 1.52 16 34 H 0.11 1.59 8.06 -2.39 -0.02 1.57 16 35 H 0.13 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 2.38 6.04 -2.39 -0.01 2.37 16 38 H 0.09 2.54 6.48 -2.39 -0.02 2.52 16 39 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -61.52 315.38 0.28 -61.24 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.30 Total: 22.42 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 3.37 Total: -25.95 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -2.60 Total: -83.82 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -1.51 Total: -10.82 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -1.31 Total: -8.98 kcal Total: -61.52 0.28 -61.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390614789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.538 kcal (2) G-P(sol) polarization free energy of solvation -61.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds