Wall clock time and date at job start Mon Mar 30 2020 05:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47319 * 2 1 4 4 C 1.50700 * 109.47467 * 239.99471 * 2 1 3 5 5 H 1.07993 * 120.00422 * 240.00043 * 4 2 1 6 6 C 1.37878 * 119.99279 * 59.99988 * 4 2 1 7 7 N 1.31509 * 120.00522 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99544 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46984 * 90.00333 * 8 6 4 10 10 H 1.48503 * 109.47198 * 210.00147 * 8 6 4 11 11 H 1.48500 * 109.47243 * 330.00405 * 8 6 4 12 12 N 1.46907 * 109.46771 * 119.99773 * 2 1 3 13 13 C 1.46901 * 111.00013 * 274.99562 * 12 2 1 14 14 H 1.08998 * 109.53536 * 34.84036 * 13 12 2 15 15 C 1.53173 * 109.61063 * 274.63235 * 13 12 2 16 16 C 1.53084 * 109.15014 * 183.14604 * 15 13 12 17 17 O 1.42860 * 109.44968 * 57.56752 * 16 15 13 18 18 C 1.43248 * 113.98201 * 298.55377 * 17 16 15 19 19 C 1.53196 * 109.07792 * 302.54051 * 18 17 16 20 20 C 1.55082 * 109.01962 * 269.82732 * 19 18 17 21 21 S 1.84184 * 100.93070 * 318.39403 * 20 19 18 22 22 C 1.53947 * 108.66929 * 179.91841 * 18 17 16 23 23 C 1.53136 * 109.53882 * 154.99904 * 13 12 2 24 24 H 1.08994 * 109.46926 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47374 * 300.00026 * 1 2 3 26 26 H 1.08996 * 109.46751 * 59.99853 * 1 2 3 27 27 H 0.96999 * 120.00435 * 179.97438 * 7 6 4 28 28 H 1.00890 * 111.00290 * 38.95448 * 12 2 1 29 29 H 1.08999 * 109.52128 * 303.04893 * 15 13 12 30 30 H 1.08997 * 109.52084 * 63.24364 * 15 13 12 31 31 H 1.08997 * 109.47202 * 177.55942 * 16 15 13 32 32 H 1.08995 * 109.47794 * 297.57449 * 16 15 13 33 33 H 1.09001 * 109.58863 * 29.77492 * 19 18 17 34 34 H 1.09002 * 109.59114 * 149.87550 * 19 18 17 35 35 H 1.09002 * 111.13816 * 76.23885 * 20 19 18 36 36 H 1.09005 * 111.13856 * 200.38742 * 20 19 18 37 37 H 1.09002 * 110.32176 * 236.68565 * 22 18 17 38 38 H 1.08998 * 110.31995 * 358.78560 * 22 18 17 39 39 H 1.09002 * 109.53505 * 57.33645 * 23 13 12 40 40 H 1.08998 * 109.54206 * 297.09796 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3449 -2.1617 -4.4122 10 1 2.4874 -0.1404 -5.1120 11 1 3.6309 -1.7567 -3.7117 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2597 0.9354 2.2902 15 6 3.4156 0.9768 2.3306 16 6 3.5034 1.8684 3.5719 17 8 3.3675 1.0649 4.7453 18 6 2.1138 0.3783 4.8388 19 6 0.9766 1.4036 4.7906 20 6 0.6428 1.8564 6.2359 21 16 0.7253 0.2500 7.1330 22 6 2.0993 -0.4463 6.1387 23 6 1.9769 -0.5787 3.6476 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7095 1.1617 -3.4844 28 1 1.4495 -1.4978 1.4102 29 1 4.2385 0.2621 2.3364 30 1 3.4740 1.5938 1.4340 31 1 4.4685 2.3747 3.5880 32 1 2.7046 2.6094 3.5444 33 1 1.2864 2.2656 4.1998 34 1 0.0951 0.9508 4.3367 35 1 1.3913 2.5540 6.6119 36 1 -0.3565 2.2883 6.2916 37 1 1.9122 -1.4973 5.9182 38 1 3.0450 -0.3339 6.6688 39 1 2.7737 -1.3217 3.6836 40 1 1.0091 -1.0782 3.6906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390614790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:24 Heat of formation + Delta-G solvation = -49.547117 kcal Electronic energy + Delta-G solvation = -19866.218195 eV Core-core repulsion = 16999.662810 eV Total energy + Delta-G solvation = -2866.555384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21058 -36.28142 -34.40033 -33.24878 -31.05928 -30.81044 -28.12284 -26.91834 -25.16289 -24.20081 -23.38421 -21.34325 -19.93840 -18.95057 -17.16559 -16.58980 -15.93579 -15.73543 -15.28588 -14.81331 -14.53893 -14.34744 -13.66608 -13.44610 -13.19829 -13.06886 -12.65509 -12.28522 -12.10474 -11.93882 -11.74683 -11.61025 -11.31205 -11.13117 -11.00495 -10.82366 -10.62961 -10.48050 -10.28735 -10.12094 -10.11145 -9.79230 -9.30502 -8.99864 -8.39380 -7.85293 -7.30653 -6.01790 -4.04976 1.69861 2.11469 3.30390 3.37005 3.41576 3.68783 4.34481 4.40518 4.49570 4.61041 4.90910 4.95137 5.03445 5.19565 5.28260 5.30610 5.31632 5.34507 5.39847 5.53071 5.60249 5.71716 5.85818 5.92643 5.97735 6.10670 6.24661 6.44031 6.63032 6.68252 6.77932 7.05480 7.21339 7.32137 7.69627 7.85755 8.23748 8.48658 8.57775 9.02477 9.60702 11.05243 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.004273 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.525738 B = 6550.636860 C = 6709.341444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.088 3.912 14 H 0.038 0.962 15 C -0.141 4.141 16 C 0.056 3.944 17 O -0.374 6.374 18 C 0.119 3.881 19 C -0.156 4.156 20 C -0.060 4.060 21 S -0.300 6.300 22 C -0.054 4.054 23 C -0.138 4.138 24 H 0.027 0.973 25 H 0.003 0.997 26 H 0.089 0.911 27 H 0.259 0.741 28 H 0.326 0.674 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.770 2.081 15.740 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.309 5.309 13 C -0.022 4.022 14 H 0.055 0.945 15 C -0.180 4.180 16 C -0.021 4.021 17 O -0.293 6.293 18 C 0.078 3.922 19 C -0.194 4.194 20 C -0.208 4.208 21 S -0.074 6.074 22 C -0.202 4.202 23 C -0.177 4.177 24 H 0.047 0.953 25 H 0.022 0.978 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.143 0.857 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.869 1.806 16.506 16.627 hybrid contribution -0.282 0.192 -1.912 1.942 sum 0.587 1.998 14.594 14.741 Atomic orbital electron populations 1.22442 1.00818 0.99193 1.00387 1.19195 0.89435 0.94374 0.86518 0.94893 1.21152 1.30187 1.12425 0.89594 0.91974 1.24944 0.95331 0.95180 0.99043 1.69874 1.37395 1.23175 1.23351 0.86520 0.79270 0.79259 0.82482 1.20840 1.21375 1.19871 1.60831 1.58134 1.08768 1.03123 1.21428 0.96071 0.94608 0.90119 0.94460 1.22193 0.98946 0.99365 0.97458 1.22753 1.01625 0.92876 0.84839 1.88031 1.35018 1.63451 1.42812 1.22138 0.84537 0.91092 0.94434 1.23101 0.99690 1.00413 0.96242 1.24312 1.05405 0.95500 0.95621 1.87795 1.48325 1.20378 1.50858 1.23993 0.99416 1.01754 0.94999 1.22525 1.02997 0.98362 0.93830 0.95338 0.97801 0.89258 0.93077 0.85662 0.90590 0.90485 0.88773 0.93055 0.88787 0.89273 0.88976 0.87615 0.87333 0.87876 0.90010 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 8.92 37.16 0.33 -3.62 16 2 C 0.21 5.14 2.39 -68.86 -0.16 4.98 16 3 H 0.03 0.88 7.18 -51.93 -0.37 0.50 16 4 C -0.49 -13.42 8.84 -34.44 -0.30 -13.72 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 12 N -0.68 -13.69 6.05 -100.78 -0.61 -14.30 16 13 C 0.09 1.46 2.13 -67.55 -0.14 1.32 16 14 H 0.04 0.65 6.22 -51.93 -0.32 0.33 16 15 C -0.14 -2.24 5.62 -26.60 -0.15 -2.38 16 16 C 0.06 0.72 6.54 37.20 0.24 0.96 16 17 O -0.37 -5.01 10.09 -35.23 -0.36 -5.37 16 18 C 0.12 1.47 0.99 -89.81 -0.09 1.38 16 19 C -0.16 -1.78 4.22 -25.53 -0.11 -1.89 16 20 C -0.06 -0.62 7.53 38.26 0.29 -0.33 16 21 S -0.30 -3.54 23.24 -107.50 -2.50 -6.04 16 22 C -0.05 -0.61 6.76 37.65 0.25 -0.35 16 23 C -0.14 -1.89 3.72 -26.45 -0.10 -1.99 16 24 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.00 0.06 7.43 -51.93 -0.39 -0.32 16 26 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.33 6.30 8.10 -39.30 -0.32 5.98 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.35 7.51 -51.93 -0.39 0.96 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.62 5.78 -51.93 -0.30 0.32 16 33 H 0.09 1.07 5.35 -51.93 -0.28 0.80 16 34 H 0.09 1.06 7.79 -51.93 -0.40 0.65 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.11 1.13 7.63 -51.93 -0.40 0.73 16 38 H 0.10 1.15 7.92 -51.93 -0.41 0.74 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 LS Contribution 314.55 15.07 4.74 4.74 Total: -1.00 -28.16 314.55 -9.55 -37.71 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.40 Total: 5.91 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.03 Total: -14.23 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.02 Total: -38.96 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.36 Total: -5.37 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.50 Total: -6.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.16 -9.55 -37.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390614790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.838 kcal (2) G-P(sol) polarization free energy of solvation -28.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds