Wall clock time and date at job start Mon Mar 30 2020 05:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47319 * 2 1 4 4 C 1.50700 * 109.47467 * 239.99471 * 2 1 3 5 5 H 1.07993 * 120.00422 * 240.00043 * 4 2 1 6 6 C 1.37878 * 119.99279 * 59.99988 * 4 2 1 7 7 N 1.31509 * 120.00522 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99544 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46984 * 90.00333 * 8 6 4 10 10 H 1.48503 * 109.47198 * 210.00147 * 8 6 4 11 11 H 1.48500 * 109.47243 * 330.00405 * 8 6 4 12 12 N 1.46907 * 109.46771 * 119.99773 * 2 1 3 13 13 C 1.46901 * 111.00013 * 274.99562 * 12 2 1 14 14 H 1.08998 * 109.53536 * 34.84036 * 13 12 2 15 15 C 1.53173 * 109.61063 * 274.63235 * 13 12 2 16 16 C 1.53084 * 109.15014 * 183.14604 * 15 13 12 17 17 O 1.42860 * 109.44968 * 57.56752 * 16 15 13 18 18 C 1.43248 * 113.98201 * 298.55377 * 17 16 15 19 19 C 1.53196 * 109.07792 * 302.54051 * 18 17 16 20 20 C 1.55082 * 109.01962 * 269.82732 * 19 18 17 21 21 S 1.84184 * 100.93070 * 318.39403 * 20 19 18 22 22 C 1.53947 * 108.66929 * 179.91841 * 18 17 16 23 23 C 1.53136 * 109.53882 * 154.99904 * 13 12 2 24 24 H 1.08994 * 109.46926 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47374 * 300.00026 * 1 2 3 26 26 H 1.08996 * 109.46751 * 59.99853 * 1 2 3 27 27 H 0.96999 * 120.00435 * 179.97438 * 7 6 4 28 28 H 1.00890 * 111.00290 * 38.95448 * 12 2 1 29 29 H 1.08999 * 109.52128 * 303.04893 * 15 13 12 30 30 H 1.08997 * 109.52084 * 63.24364 * 15 13 12 31 31 H 1.08997 * 109.47202 * 177.55942 * 16 15 13 32 32 H 1.08995 * 109.47794 * 297.57449 * 16 15 13 33 33 H 1.09001 * 109.58863 * 29.77492 * 19 18 17 34 34 H 1.09002 * 109.59114 * 149.87550 * 19 18 17 35 35 H 1.09002 * 111.13816 * 76.23885 * 20 19 18 36 36 H 1.09005 * 111.13856 * 200.38742 * 20 19 18 37 37 H 1.09002 * 110.32176 * 236.68565 * 22 18 17 38 38 H 1.08998 * 110.31995 * 358.78560 * 22 18 17 39 39 H 1.09002 * 109.53505 * 57.33645 * 23 13 12 40 40 H 1.08998 * 109.54206 * 297.09796 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3449 -2.1617 -4.4122 10 1 2.4874 -0.1404 -5.1120 11 1 3.6309 -1.7567 -3.7117 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2597 0.9354 2.2902 15 6 3.4156 0.9768 2.3306 16 6 3.5034 1.8684 3.5719 17 8 3.3675 1.0649 4.7453 18 6 2.1138 0.3783 4.8388 19 6 0.9766 1.4036 4.7906 20 6 0.6428 1.8564 6.2359 21 16 0.7253 0.2500 7.1330 22 6 2.0993 -0.4463 6.1387 23 6 1.9769 -0.5787 3.6476 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7095 1.1617 -3.4844 28 1 1.4495 -1.4978 1.4102 29 1 4.2385 0.2621 2.3364 30 1 3.4740 1.5938 1.4340 31 1 4.4685 2.3747 3.5880 32 1 2.7046 2.6094 3.5444 33 1 1.2864 2.2656 4.1998 34 1 0.0951 0.9508 4.3367 35 1 1.3913 2.5540 6.6119 36 1 -0.3565 2.2883 6.2916 37 1 1.9122 -1.4973 5.9182 38 1 3.0450 -0.3339 6.6688 39 1 2.7737 -1.3217 3.6836 40 1 1.0091 -1.0782 3.6906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390614790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:24 Heat of formation + Delta-G solvation = -66.756908 kcal Electronic energy + Delta-G solvation = -19866.964467 eV Core-core repulsion = 16999.662810 eV Total energy + Delta-G solvation = -2867.301657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.31359 -37.89307 -35.38293 -35.03350 -32.75435 -31.78162 -29.52778 -28.21815 -27.21792 -25.23893 -24.49839 -22.79250 -21.59276 -20.06237 -18.45924 -18.06827 -17.10006 -17.04095 -16.67080 -16.39244 -15.72251 -15.62202 -14.98934 -14.79627 -14.40337 -14.28210 -13.95736 -13.76193 -13.48556 -13.19002 -12.97284 -12.89084 -12.84646 -12.68526 -12.50139 -12.23456 -12.18214 -12.08545 -12.04805 -11.63349 -11.21161 -11.08688 -10.95315 -10.48551 -10.40112 -8.97795 -8.75481 -8.09980 -6.20541 0.83202 1.25171 1.42197 1.43418 1.53896 2.43605 2.68736 3.18659 3.34419 3.45944 3.61563 3.72456 3.97512 4.02020 4.11022 4.18700 4.25861 4.35771 4.40086 4.54735 4.63323 4.66746 4.72783 4.74558 4.78254 4.87088 4.94444 4.97546 5.03898 5.10373 5.21524 5.34145 5.46392 5.69588 5.83998 6.17292 6.28527 6.65613 6.84117 6.95177 7.49673 8.95330 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.004273 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.525738 B = 6550.636860 C = 6709.341444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.220 3.780 3 H 0.004 0.996 4 C -0.514 4.514 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.957 3.043 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.684 5.684 13 C 0.089 3.911 14 H 0.031 0.969 15 C -0.138 4.138 16 C 0.063 3.937 17 O -0.378 6.378 18 C 0.121 3.879 19 C -0.156 4.156 20 C -0.050 4.050 21 S -0.325 6.325 22 C -0.048 4.048 23 C -0.129 4.129 24 H 0.030 0.970 25 H 0.025 0.975 26 H 0.060 0.940 27 H 0.260 0.740 28 H 0.332 0.668 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 1.972 16.754 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.112 3.888 3 H 0.022 0.978 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.314 5.314 13 C -0.021 4.021 14 H 0.049 0.951 15 C -0.177 4.177 16 C -0.014 4.014 17 O -0.298 6.298 18 C 0.080 3.920 19 C -0.195 4.195 20 C -0.197 4.197 21 S -0.099 6.099 22 C -0.195 4.195 23 C -0.168 4.168 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.933 1.690 17.540 17.646 hybrid contribution -0.294 0.239 -2.203 2.235 sum 0.639 1.929 15.337 15.471 Atomic orbital electron populations 1.22248 1.00175 0.99166 0.99993 1.18907 0.89746 0.92724 0.87463 0.97828 1.21456 1.30303 1.12384 0.91162 0.92931 1.25669 0.95498 0.95842 1.01757 1.69995 1.38117 1.24189 1.23919 0.85572 0.78773 0.78264 0.79086 1.20187 1.21018 1.19645 1.60701 1.57887 1.09388 1.03385 1.21484 0.96185 0.94289 0.90166 0.95105 1.22144 0.98107 0.99240 0.98211 1.22738 1.03209 0.92275 0.83169 1.88039 1.35609 1.63556 1.42569 1.22182 0.84583 0.91045 0.94181 1.23073 0.99092 1.00128 0.97158 1.24361 1.06690 0.94572 0.94126 1.87921 1.48603 1.21863 1.51493 1.23959 0.99336 1.02031 0.94214 1.22437 1.03378 0.98244 0.92738 0.95041 0.95650 0.92076 0.93054 0.85082 0.91690 0.92844 0.86921 0.91893 0.88694 0.89668 0.88112 0.86005 0.86428 0.87564 0.90235 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.32 8.92 71.98 0.64 -6.68 16 2 C 0.22 10.81 2.39 44.17 0.11 10.91 16 3 H 0.00 0.21 7.18 -2.39 -0.02 0.19 16 4 C -0.51 -28.22 8.84 25.60 0.23 -27.99 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.58 5.30 84.66 0.45 1.02 16 7 N -0.92 -52.48 11.32 21.45 0.24 -52.23 16 8 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 12 N -0.68 -27.58 6.05 -472.76 -2.86 -30.44 16 13 C 0.09 2.90 2.13 45.02 0.10 2.99 16 14 H 0.03 1.06 6.22 -2.39 -0.01 1.04 16 15 C -0.14 -4.36 5.62 30.68 0.17 -4.18 16 16 C 0.06 1.52 6.54 72.01 0.47 1.99 16 17 O -0.38 -9.34 10.09 -148.98 -1.50 -10.84 16 18 C 0.12 2.74 0.99 -10.27 -0.01 2.73 16 19 C -0.16 -3.22 4.22 31.37 0.13 -3.09 16 20 C -0.05 -0.89 7.53 72.70 0.55 -0.34 16 21 S -0.32 -7.02 23.24 -56.49 -1.31 -8.33 16 22 C -0.05 -0.98 6.76 72.30 0.49 -0.49 16 23 C -0.13 -3.34 3.72 30.78 0.11 -3.22 16 24 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 25 H 0.02 1.03 7.43 -2.38 -0.02 1.01 16 26 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 27 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.33 12.63 8.10 -89.70 -0.73 11.91 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.05 1.92 7.51 -2.39 -0.02 1.90 16 31 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 1.40 5.78 -2.39 -0.01 1.38 16 33 H 0.09 1.96 5.35 -2.39 -0.01 1.95 16 34 H 0.08 1.85 7.79 -2.39 -0.02 1.83 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 36 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.12 2.19 7.63 -2.39 -0.02 2.17 16 38 H 0.11 2.14 7.92 -2.39 -0.02 2.12 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.08 1.96 8.09 -2.39 -0.02 1.94 16 Total: -1.00 -59.69 314.55 0.33 -59.36 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.30 Total: 23.14 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 3.43 Total: -26.36 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.62 Total: -82.67 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -1.50 Total: -10.84 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -7.02 SS G_CDS: -1.31 Total: -8.33 kcal Total: -59.69 0.33 -59.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390614790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.400 kcal (2) G-P(sol) polarization free energy of solvation -59.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds