Wall clock time and date at job start Mon Mar 30 2020 05:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00077 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46634 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46755 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.46897 * 110.99861 * 179.97438 * 13 12 11 15 15 H 1.09001 * 115.55413 * 9.41789 * 14 13 12 16 16 C 1.52996 * 117.49928 * 223.74434 * 14 13 12 17 17 C 1.52999 * 117.49972 * 155.08711 * 14 13 12 18 18 H 1.09006 * 117.49664 * 359.97438 * 17 14 13 19 19 C 1.53000 * 117.50218 * 214.98268 * 17 14 13 20 20 H 1.08996 * 110.27306 * 60.63481 * 19 17 14 21 21 C 1.54947 * 110.31100 * 182.83193 * 19 17 14 22 22 C 1.55305 * 100.94296 * 155.35836 * 21 19 17 23 23 C 1.54390 * 102.25060 * 325.86883 * 22 21 19 24 24 O 1.43236 * 107.59030 * 21.35652 * 23 22 21 25 25 H 0.96998 * 119.99330 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46901 * 299.99874 * 10 9 7 27 27 H 1.08995 * 109.46756 * 60.00354 * 10 9 7 28 28 H 1.08991 * 109.47539 * 299.99799 * 11 10 9 29 29 H 1.08995 * 109.47390 * 60.00583 * 11 10 9 30 30 H 1.09005 * 109.47067 * 300.00214 * 12 11 10 31 31 H 1.09001 * 109.47120 * 59.99947 * 12 11 10 32 32 H 1.00899 * 110.99771 * 303.95252 * 13 12 11 33 33 H 1.09003 * 117.50053 * 0.02562 * 16 14 13 34 34 H 1.09006 * 117.49821 * 144.99643 * 16 14 13 35 35 H 1.09000 * 111.12273 * 273.27506 * 21 19 17 36 36 H 1.09000 * 111.12592 * 37.43901 * 21 19 17 37 37 H 1.08996 * 110.84944 * 207.67658 * 22 21 19 38 38 H 1.08996 * 111.02098 * 84.13083 * 22 21 19 39 39 H 1.09003 * 109.82629 * 261.83905 * 23 22 21 40 40 H 1.08994 * 109.90233 * 140.91271 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9794 -5.3242 -0.0012 12 6 3.1515 -6.3077 -0.0018 13 7 2.6363 -7.6834 -0.0031 14 6 3.7361 -8.6573 -0.0043 15 1 4.7313 -8.2429 0.1567 16 6 3.6147 -9.8587 -0.9439 17 6 3.4491 -10.0477 0.5660 18 1 2.4443 -10.2397 0.9426 19 6 4.5811 -10.7502 1.3184 20 1 4.8826 -10.1600 2.1837 21 6 4.1354 -12.1670 1.7599 22 6 5.5077 -12.8848 1.8764 23 6 6.3219 -12.2204 0.7453 24 8 5.7019 -10.9644 0.4459 25 1 -0.4849 -0.8401 0.0004 26 1 3.1246 -3.7313 -0.8905 27 1 3.1245 -3.7313 0.8895 28 1 1.3706 -5.4846 0.8885 29 1 1.3711 -5.4840 -0.8914 30 1 3.7600 -6.1471 -0.8918 31 1 3.7602 -6.1480 0.8882 32 1 2.0167 -7.8382 0.7781 33 1 2.7190 -9.9263 -1.5614 34 1 4.5301 -10.2346 -1.4010 35 1 3.6253 -12.1361 2.7227 36 1 3.5097 -12.6364 1.0008 37 1 5.4016 -13.9553 1.7008 38 1 5.9665 -12.6961 2.8469 39 1 6.3137 -12.8572 -0.1393 40 1 7.3483 -12.0572 1.0737 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390772199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:02 Heat of formation + Delta-G solvation = -46.298533 kcal Electronic energy + Delta-G solvation = -17722.045898 eV Core-core repulsion = 14855.631383 eV Total energy + Delta-G solvation = -2866.414515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.08422 -37.73650 -35.02803 -32.53544 -32.51456 -31.35646 -29.18251 -25.40170 -24.40322 -23.86777 -22.12248 -21.36162 -20.97494 -20.27415 -18.09809 -17.22248 -16.59712 -15.93126 -15.41859 -15.15283 -14.82612 -14.37789 -13.87014 -13.77611 -13.72249 -13.13132 -12.95756 -12.50837 -12.38429 -12.12947 -12.04051 -11.79222 -11.64824 -11.25464 -11.23730 -11.08369 -10.91252 -10.71973 -10.37684 -10.31117 -10.17508 -9.75415 -9.32353 -8.98489 -8.32814 -8.28577 -6.67517 -6.60759 -3.98240 3.27779 3.39054 3.40047 3.42528 3.57517 3.59777 3.90530 4.09516 4.27331 4.42040 4.49098 4.70091 4.78666 4.88524 4.97331 5.10172 5.18108 5.21825 5.24274 5.29141 5.33141 5.35789 5.42087 5.45899 5.50273 5.59216 5.69639 5.74234 5.83916 5.94109 6.03015 6.10041 6.25156 6.52320 6.66678 6.69186 7.03899 7.30115 7.97462 8.52362 9.29481 10.83721 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.051625 B = 0.002345 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.238675 B =11936.382613 C =12160.706370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.032 3.968 3 Si 1.087 2.913 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.287 1.287 7 C -0.588 4.588 8 H 0.065 0.935 9 S -0.190 6.190 10 C -0.089 4.089 11 C -0.098 4.098 12 C 0.066 3.934 13 N -0.660 5.660 14 C 0.030 3.970 15 H 0.100 0.900 16 C -0.148 4.148 17 C -0.175 4.175 18 H 0.116 0.884 19 C 0.111 3.889 20 H 0.072 0.928 21 C -0.148 4.148 22 C -0.157 4.157 23 C 0.051 3.949 24 O -0.377 6.377 25 H 0.277 0.723 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.341 0.659 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.300 -26.113 3.495 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.178 4.178 3 Si 0.913 3.087 4 H -0.211 1.211 5 H -0.205 1.205 6 H -0.213 1.213 7 C -0.736 4.736 8 H 0.084 0.916 9 S 0.038 5.962 10 C -0.238 4.238 11 C -0.136 4.136 12 C -0.064 4.064 13 N -0.290 5.290 14 C -0.081 4.081 15 H 0.118 0.882 16 C -0.186 4.186 17 C -0.194 4.194 18 H 0.133 0.867 19 C 0.053 3.947 20 H 0.090 0.910 21 C -0.185 4.185 22 C -0.195 4.195 23 C -0.026 4.026 24 O -0.296 6.296 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.160 0.840 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.944 -24.512 2.652 26.227 hybrid contribution 1.931 -1.491 1.141 2.693 sum 10.875 -26.003 3.792 28.439 Atomic orbital electron populations 1.70771 1.06662 1.30930 1.43832 1.26093 0.96406 1.02204 0.93114 0.83283 0.74461 0.73916 0.77016 1.21082 1.20510 1.21287 1.23563 0.95648 0.91278 1.63068 0.91629 1.84149 1.12703 1.02038 1.97340 1.23026 1.01358 0.96349 1.03098 1.21284 0.97138 0.92093 1.03126 1.22048 0.97081 0.86674 1.00615 1.60255 1.17166 1.02470 1.49158 1.22458 0.94849 0.86661 1.04110 0.88213 1.23128 1.03599 1.00708 0.91203 1.22870 0.98643 1.00006 0.97912 0.86653 1.22410 0.85431 0.95242 0.91604 0.90977 1.23253 0.97424 0.95172 1.02672 1.23121 0.95811 1.00989 0.99586 1.23091 0.96557 0.85316 0.97594 1.88419 1.44721 1.37613 1.58867 0.91060 0.91786 0.92048 0.91799 0.90676 0.90840 0.95130 0.83967 0.88561 0.87943 0.89872 0.89993 0.90044 0.90561 0.91376 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.67 55.49 0.76 -27.00 16 2 C 0.03 0.94 5.49 -17.43 -0.10 0.84 16 3 Si 1.09 25.49 29.92 -169.99 -5.09 20.41 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.59 -17.38 9.50 30.94 0.29 -17.08 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.19 -5.05 20.46 -107.50 -2.20 -7.25 16 10 C -0.09 -1.84 5.67 37.16 0.21 -1.63 16 11 C -0.10 -1.63 5.48 -26.73 -0.15 -1.78 16 12 C 0.07 0.92 5.54 -3.82 -0.02 0.90 16 13 N -0.66 -8.20 6.75 -106.72 -0.72 -8.92 16 14 C 0.03 0.34 5.94 -67.72 -0.40 -0.07 16 15 H 0.10 1.20 7.90 -51.93 -0.41 0.79 16 16 C -0.15 -1.56 9.82 -26.70 -0.26 -1.82 16 17 C -0.17 -1.62 5.51 -90.59 -0.50 -2.11 16 18 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 19 C 0.11 0.94 3.80 -25.70 -0.10 0.84 16 20 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 21 C -0.15 -0.93 6.57 -24.48 -0.16 -1.09 16 22 C -0.16 -0.86 7.02 -24.78 -0.17 -1.03 16 23 C 0.05 0.36 7.79 37.89 0.30 0.65 16 24 O -0.38 -3.73 9.47 -35.23 -0.33 -4.07 16 25 H 0.28 8.76 7.12 -40.82 -0.29 8.47 16 26 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.34 3.86 8.69 -39.29 -0.34 3.52 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 1.11 7.09 -51.93 -0.37 0.74 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 340.36 15.07 5.13 5.13 Total: -1.00 -32.37 340.36 -10.46 -42.83 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.95 Total: 2.23 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -1.06 Total: -23.37 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.04 Total: -35.92 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.33 Total: -4.07 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.41 kcal Atomic # 16 Polarization: -5.05 SS G_CDS: -2.20 Total: -7.25 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.37 -10.46 -42.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390772199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.466 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds