Wall clock time and date at job start Mon Mar 30 2020 05:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00077 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46634 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46755 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.46897 * 110.99861 * 179.97438 * 13 12 11 15 15 H 1.09001 * 115.55413 * 9.41789 * 14 13 12 16 16 C 1.52996 * 117.49928 * 223.74434 * 14 13 12 17 17 C 1.52999 * 117.49972 * 155.08711 * 14 13 12 18 18 H 1.09006 * 117.49664 * 359.97438 * 17 14 13 19 19 C 1.53000 * 117.50218 * 214.98268 * 17 14 13 20 20 H 1.08996 * 110.27306 * 60.63481 * 19 17 14 21 21 C 1.54947 * 110.31100 * 182.83193 * 19 17 14 22 22 C 1.55305 * 100.94296 * 155.35836 * 21 19 17 23 23 C 1.54390 * 102.25060 * 325.86883 * 22 21 19 24 24 O 1.43236 * 107.59030 * 21.35652 * 23 22 21 25 25 H 0.96998 * 119.99330 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46901 * 299.99874 * 10 9 7 27 27 H 1.08995 * 109.46756 * 60.00354 * 10 9 7 28 28 H 1.08991 * 109.47539 * 299.99799 * 11 10 9 29 29 H 1.08995 * 109.47390 * 60.00583 * 11 10 9 30 30 H 1.09005 * 109.47067 * 300.00214 * 12 11 10 31 31 H 1.09001 * 109.47120 * 59.99947 * 12 11 10 32 32 H 1.00899 * 110.99771 * 303.95252 * 13 12 11 33 33 H 1.09003 * 117.50053 * 0.02562 * 16 14 13 34 34 H 1.09006 * 117.49821 * 144.99643 * 16 14 13 35 35 H 1.09000 * 111.12273 * 273.27506 * 21 19 17 36 36 H 1.09000 * 111.12592 * 37.43901 * 21 19 17 37 37 H 1.08996 * 110.84944 * 207.67658 * 22 21 19 38 38 H 1.08996 * 111.02098 * 84.13083 * 22 21 19 39 39 H 1.09003 * 109.82629 * 261.83905 * 23 22 21 40 40 H 1.08994 * 109.90233 * 140.91271 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9794 -5.3242 -0.0012 12 6 3.1515 -6.3077 -0.0018 13 7 2.6363 -7.6834 -0.0031 14 6 3.7361 -8.6573 -0.0043 15 1 4.7313 -8.2429 0.1567 16 6 3.6147 -9.8587 -0.9439 17 6 3.4491 -10.0477 0.5660 18 1 2.4443 -10.2397 0.9426 19 6 4.5811 -10.7502 1.3184 20 1 4.8826 -10.1600 2.1837 21 6 4.1354 -12.1670 1.7599 22 6 5.5077 -12.8848 1.8764 23 6 6.3219 -12.2204 0.7453 24 8 5.7019 -10.9644 0.4459 25 1 -0.4849 -0.8401 0.0004 26 1 3.1246 -3.7313 -0.8905 27 1 3.1245 -3.7313 0.8895 28 1 1.3706 -5.4846 0.8885 29 1 1.3711 -5.4840 -0.8914 30 1 3.7600 -6.1471 -0.8918 31 1 3.7602 -6.1480 0.8882 32 1 2.0167 -7.8382 0.7781 33 1 2.7190 -9.9263 -1.5614 34 1 4.5301 -10.2346 -1.4010 35 1 3.6253 -12.1361 2.7227 36 1 3.5097 -12.6364 1.0008 37 1 5.4016 -13.9553 1.7008 38 1 5.9665 -12.6961 2.8469 39 1 6.3137 -12.8572 -0.1393 40 1 7.3483 -12.0572 1.0737 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390772199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:01 Heat of formation + Delta-G solvation = -66.636652 kcal Electronic energy + Delta-G solvation = -17722.927825 eV Core-core repulsion = 14855.631383 eV Total energy + Delta-G solvation = -2867.296442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.72919 -38.61353 -36.18663 -34.77547 -33.08176 -32.56233 -29.85672 -27.39914 -26.01900 -24.50417 -22.72750 -22.54232 -21.92796 -21.04419 -20.26032 -17.84231 -17.28853 -17.06671 -16.74077 -16.21847 -15.97934 -15.76496 -15.36807 -14.92713 -14.70648 -14.57050 -14.37362 -13.91073 -13.44890 -13.19358 -12.81192 -12.73936 -12.70343 -12.50140 -12.36910 -12.24751 -11.99441 -11.96519 -11.74460 -11.41063 -11.29737 -11.11348 -11.02339 -10.42537 -10.40552 -9.29210 -8.95273 -8.87815 -6.29363 1.40486 1.56021 1.58590 1.78139 2.31726 2.74668 2.86731 2.91963 2.99047 3.13365 3.57444 3.80428 3.89256 3.97578 4.03402 4.05123 4.15666 4.20828 4.25086 4.33427 4.42509 4.47089 4.58147 4.64025 4.67508 4.80232 4.82506 4.89872 4.96020 5.00256 5.08537 5.10555 5.21075 5.26230 5.27951 5.61862 6.01763 6.10841 6.15211 6.36356 7.03338 8.49392 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.051625 B = 0.002345 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.238675 B =11936.382613 C =12160.706370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.019 4.019 3 Si 1.137 2.863 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.606 4.606 8 H 0.064 0.936 9 S -0.243 6.243 10 C -0.068 4.068 11 C -0.084 4.084 12 C 0.079 3.921 13 N -0.663 5.663 14 C 0.016 3.984 15 H 0.091 0.909 16 C -0.150 4.150 17 C -0.154 4.154 18 H 0.128 0.872 19 C 0.105 3.895 20 H 0.071 0.929 21 C -0.143 4.143 22 C -0.152 4.152 23 C 0.042 3.958 24 O -0.402 6.402 25 H 0.263 0.737 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.348 0.652 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.430 -27.266 4.218 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.223 4.223 3 Si 0.955 3.045 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.753 4.753 8 H 0.083 0.917 9 S -0.015 6.015 10 C -0.217 4.217 11 C -0.123 4.123 12 C -0.052 4.052 13 N -0.294 5.294 14 C -0.094 4.094 15 H 0.109 0.891 16 C -0.188 4.188 17 C -0.174 4.174 18 H 0.146 0.854 19 C 0.047 3.953 20 H 0.089 0.911 21 C -0.181 4.181 22 C -0.189 4.189 23 C -0.034 4.034 24 O -0.322 6.322 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.168 0.832 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.075 -25.707 3.380 27.817 hybrid contribution 1.619 -1.254 0.900 2.236 sum 11.694 -26.960 4.280 29.697 Atomic orbital electron populations 1.70888 1.07735 1.30191 1.45832 1.27811 0.96463 1.06263 0.91737 0.82696 0.73895 0.69659 0.78241 1.19159 1.20014 1.19300 1.23927 0.95868 0.92734 1.62807 0.91735 1.84196 1.16601 1.03192 1.97463 1.23020 0.98797 0.96746 1.03163 1.21150 0.98042 0.90156 1.02952 1.21813 0.95595 0.86950 1.00820 1.60183 1.17718 1.01737 1.49741 1.22399 0.94043 0.87114 1.05833 0.89113 1.23072 1.03266 1.00363 0.92093 1.22944 0.99612 0.97887 0.96927 0.85424 1.22505 0.84993 0.96563 0.91218 0.91115 1.23244 0.97959 0.93603 1.03290 1.23120 0.94898 1.01638 0.99243 1.23271 0.96947 0.84642 0.98568 1.88393 1.45314 1.39031 1.59489 0.92583 0.91849 0.91665 0.91371 0.91463 0.91198 0.94423 0.83184 0.88763 0.88473 0.88475 0.89989 0.88508 0.89867 0.90942 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.67 13.67 21.65 0.30 -57.37 16 2 C -0.02 -1.14 5.49 84.86 0.47 -0.67 16 3 Si 1.14 50.48 29.92 68.60 2.05 52.53 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.61 -36.00 9.50 67.95 0.65 -35.36 16 8 H 0.06 3.73 7.80 -2.91 -0.02 3.71 16 9 S -0.24 -13.07 20.46 -56.49 -1.16 -14.22 16 10 C -0.07 -2.78 5.67 71.98 0.41 -2.37 16 11 C -0.08 -2.73 5.48 30.60 0.17 -2.56 16 12 C 0.08 2.10 5.54 86.30 0.48 2.58 16 13 N -0.66 -15.56 6.75 -491.56 -3.32 -18.88 16 14 C 0.02 0.35 5.94 44.91 0.27 0.62 16 15 H 0.09 2.13 7.90 -2.39 -0.02 2.11 16 16 C -0.15 -3.01 9.82 30.61 0.30 -2.71 16 17 C -0.15 -2.61 5.51 -10.77 -0.06 -2.67 16 18 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 19 C 0.10 1.61 3.80 31.26 0.12 1.73 16 20 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 21 C -0.14 -1.47 6.57 32.05 0.21 -1.26 16 22 C -0.15 -1.30 7.02 31.86 0.22 -1.08 16 23 C 0.04 0.53 7.79 72.45 0.56 1.10 16 24 O -0.40 -7.58 9.47 -148.98 -1.41 -9.00 16 25 H 0.26 17.08 7.12 -92.71 -0.66 16.42 16 26 H 0.06 2.60 8.14 -2.40 -0.02 2.58 16 27 H 0.06 2.62 8.14 -2.40 -0.02 2.61 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.35 7.27 8.69 -89.69 -0.78 6.49 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 2.06 7.09 -2.38 -0.02 2.04 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.85 8.06 -2.39 -0.02 0.83 16 37 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -69.65 340.36 0.59 -69.06 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.33 Total: 20.53 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 3.79 Total: -42.66 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -3.02 Total: -76.25 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -1.41 Total: -9.00 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Atomic # 16 Polarization: -13.07 SS G_CDS: -1.16 Total: -14.22 kcal Total: -69.65 0.59 -69.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390772199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.428 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds