Wall clock time and date at job start Mon Mar 30 2020 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48495 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46917 * 299.99629 * 3 2 1 6 6 H 1.48504 * 109.46805 * 59.99708 * 3 2 1 7 7 C 1.38801 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99970 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99604 * 0.02562 * 7 2 1 10 10 C 1.81010 * 99.99684 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46805 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46541 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46745 * 179.97438 * 12 11 10 14 14 C 1.46906 * 110.99821 * 179.97438 * 13 12 11 15 15 H 1.08999 * 115.56053 * 9.31217 * 14 13 12 16 16 C 1.53006 * 117.49827 * 223.62115 * 14 13 12 17 17 C 1.53000 * 117.49496 * 155.00081 * 14 13 12 18 18 H 1.09000 * 117.52208 * 0.02562 * 17 14 13 19 19 C 1.53002 * 117.49646 * 214.97932 * 17 14 13 20 20 H 1.09002 * 109.82434 * 300.68982 * 19 17 14 21 21 C 1.54386 * 109.90472 * 179.75378 * 19 17 14 22 22 C 1.55306 * 102.25271 * 219.08621 * 21 19 17 23 23 C 1.54950 * 100.94218 * 34.13402 * 22 21 19 24 24 O 1.43241 * 109.83035 * 61.57454 * 19 17 14 25 25 H 0.97001 * 120.00013 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46896 * 60.00331 * 10 9 7 27 27 H 1.09002 * 109.47033 * 299.99830 * 10 9 7 28 28 H 1.08997 * 109.46697 * 60.00328 * 11 10 9 29 29 H 1.09002 * 109.47144 * 299.99710 * 11 10 9 30 30 H 1.08992 * 109.47504 * 59.99944 * 12 11 10 31 31 H 1.09002 * 109.47083 * 299.99647 * 12 11 10 32 32 H 1.00899 * 110.99956 * 56.04667 * 13 12 11 33 33 H 1.09000 * 117.49711 * 145.02234 * 16 14 13 34 34 H 1.08999 * 117.51491 * 359.97438 * 16 14 13 35 35 H 1.09000 * 110.84933 * 337.27932 * 21 19 17 36 36 H 1.09001 * 110.84623 * 100.89979 * 21 19 17 37 37 H 1.09002 * 111.12884 * 276.21730 * 22 21 19 38 38 H 1.09000 * 111.12229 * 152.04837 * 22 21 19 39 39 H 1.08992 * 110.31012 * 204.63970 * 23 22 21 40 40 H 1.09000 * 110.39363 * 82.50862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9792 -5.3243 -0.0001 12 6 3.1513 -6.3077 0.0005 13 7 2.6361 -7.6834 0.0005 14 6 3.7359 -8.6574 0.0005 15 1 4.7313 -8.2427 0.1597 16 6 3.6134 -9.8613 -0.9358 17 6 3.4492 -10.0465 0.5741 18 1 2.4446 -10.2383 0.9511 19 6 4.5818 -10.7474 1.3271 20 1 5.4411 -10.8734 0.6685 21 6 4.1030 -12.1253 1.8327 22 6 4.7661 -12.2106 3.2345 23 6 4.7201 -10.7250 3.6726 24 8 4.9566 -9.9725 2.4720 25 1 -0.4850 0.8401 -0.0004 26 1 3.1244 -3.7314 0.8905 27 1 3.1244 -3.7314 -0.8895 28 1 1.3709 -5.4840 -0.8903 29 1 1.3704 -5.4847 0.8897 30 1 3.7593 -6.1478 0.8909 31 1 3.7605 -6.1475 -0.8890 32 1 2.0169 -7.8376 -0.7811 33 1 4.5283 -10.2387 -1.3926 34 1 2.7167 -9.9311 -1.5515 35 1 3.0164 -12.1521 1.9153 36 1 4.4636 -12.9234 1.1838 37 1 5.7937 -12.5671 3.1620 38 1 4.1815 -12.8371 3.9082 39 1 5.5006 -10.5225 4.4059 40 1 3.7414 -10.4809 4.0855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390772204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:10 Heat of formation + Delta-G solvation = -41.193306 kcal Electronic energy + Delta-G solvation = -17770.973677 eV Core-core repulsion = 14904.780541 eV Total energy + Delta-G solvation = -2866.193136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.93827 -37.80129 -34.98540 -32.41274 -32.38442 -31.26162 -29.03427 -25.70658 -24.63824 -23.46785 -22.20424 -21.39260 -21.10367 -20.27833 -17.41977 -16.99089 -16.55917 -15.79582 -15.51371 -14.94250 -14.77809 -14.50727 -14.01812 -13.69292 -13.63517 -12.98795 -12.82402 -12.52195 -12.19890 -12.04270 -11.75689 -11.70332 -11.57281 -11.32108 -11.19589 -11.06174 -10.79101 -10.75691 -10.60978 -10.35116 -10.25716 -9.70991 -9.46597 -9.03458 -8.25590 -8.20416 -6.48787 -6.19650 -3.89380 3.23295 3.24521 3.31619 3.32809 3.58195 3.92420 3.96935 4.17704 4.25821 4.47480 4.53136 4.77402 4.85498 4.90102 5.02610 5.15012 5.16327 5.20286 5.35490 5.36664 5.43044 5.45640 5.49445 5.52495 5.57028 5.61687 5.71181 5.80822 5.82538 5.97986 6.06664 6.18321 6.38261 6.65561 6.79349 6.82868 7.09462 7.37508 7.64216 8.40366 9.26744 10.88638 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.038123 B = 0.002525 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.285386 B =11087.982391 C =11395.117704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.514 4.514 8 H 0.073 0.927 9 S -0.134 6.134 10 C -0.111 4.111 11 C -0.096 4.096 12 C 0.066 3.934 13 N -0.658 5.658 14 C 0.047 3.953 15 H 0.110 0.890 16 C -0.200 4.200 17 C -0.159 4.159 18 H 0.109 0.891 19 C 0.111 3.889 20 H 0.077 0.923 21 C -0.147 4.147 22 C -0.158 4.158 23 C 0.049 3.951 24 O -0.371 6.371 25 H 0.266 0.734 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.341 0.659 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.118 -25.145 2.216 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.091 0.909 9 S 0.094 5.906 10 C -0.261 4.261 11 C -0.135 4.135 12 C -0.064 4.064 13 N -0.288 5.288 14 C -0.064 4.064 15 H 0.128 0.872 16 C -0.238 4.238 17 C -0.178 4.178 18 H 0.127 0.873 19 C 0.054 3.946 20 H 0.095 0.905 21 C -0.185 4.185 22 C -0.196 4.196 23 C -0.027 4.027 24 O -0.290 6.290 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.161 0.839 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.819 -24.992 2.890 26.345 hybrid contribution 2.009 1.085 -0.882 2.448 sum 9.828 -23.907 2.007 25.926 Atomic orbital electron populations 1.70037 1.05913 1.27160 1.47466 1.25024 0.95090 0.99102 0.94684 0.86109 0.79656 0.81878 0.77852 1.19617 1.20602 1.20573 1.22739 0.94555 0.90792 1.58184 0.90922 1.84627 1.09670 0.99451 1.96836 1.23217 1.02790 0.97276 1.02792 1.21252 0.96978 0.92194 1.03054 1.22070 0.97264 0.86530 1.00581 1.60162 1.16977 1.02602 1.49019 1.22336 0.95361 0.87039 1.01701 0.87211 1.23547 1.03353 1.04652 0.92295 1.22929 0.99841 1.00599 0.94461 0.87308 1.22254 0.95120 0.89278 0.87989 0.90473 1.23159 1.01730 0.97101 0.96466 1.23289 1.01770 0.97618 0.96918 1.23370 1.01313 0.89708 0.88319 1.88499 1.85591 1.41129 1.13819 0.92399 0.92047 0.92321 0.91849 0.90730 0.90828 0.95157 0.83932 0.88778 0.88416 0.90167 0.90112 0.90501 0.89962 0.89875 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.07 2.07 7.80 -52.49 -0.41 1.66 16 9 S -0.13 -3.60 21.44 -107.50 -2.30 -5.91 16 10 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 11 C -0.10 -1.64 5.48 -26.73 -0.15 -1.78 16 12 C 0.07 0.94 5.54 -3.82 -0.02 0.92 16 13 N -0.66 -8.47 6.78 -106.72 -0.72 -9.19 16 14 C 0.05 0.53 5.97 -67.71 -0.40 0.13 16 15 H 0.11 1.33 7.90 -51.93 -0.41 0.92 16 16 C -0.20 -1.77 9.88 -26.73 -0.26 -2.03 16 17 C -0.16 -1.58 5.31 -90.62 -0.48 -2.06 16 18 H 0.11 1.15 7.84 -51.93 -0.41 0.74 16 19 C 0.11 1.02 3.71 -26.00 -0.10 0.93 16 20 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 21 C -0.15 -1.00 6.55 -24.78 -0.16 -1.17 16 22 C -0.16 -1.00 7.16 -24.48 -0.18 -1.17 16 23 C 0.05 0.42 7.78 38.19 0.30 0.72 16 24 O -0.37 -4.29 10.96 -35.23 -0.39 -4.68 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 27 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.34 3.99 8.52 -39.29 -0.33 3.66 16 33 H 0.09 0.72 8.06 -51.93 -0.42 0.31 16 34 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.08 0.54 7.65 -51.93 -0.40 0.15 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 342.96 15.07 5.17 5.17 Total: -1.00 -32.13 342.96 -10.58 -42.71 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.99 Total: 1.20 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -1.05 Total: -20.49 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.01 Total: -34.86 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.39 Total: -4.68 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.30 Total: -5.91 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.13 -10.58 -42.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390772204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.514 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds