Wall clock time and date at job start Mon Mar 30 2020 05:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48495 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46917 * 299.99629 * 3 2 1 6 6 H 1.48504 * 109.46805 * 59.99708 * 3 2 1 7 7 C 1.38801 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99970 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99604 * 0.02562 * 7 2 1 10 10 C 1.81010 * 99.99684 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46805 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46541 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46745 * 179.97438 * 12 11 10 14 14 C 1.46906 * 110.99821 * 179.97438 * 13 12 11 15 15 H 1.08999 * 115.56053 * 9.31217 * 14 13 12 16 16 C 1.53006 * 117.49827 * 223.62115 * 14 13 12 17 17 C 1.53000 * 117.49496 * 155.00081 * 14 13 12 18 18 H 1.09000 * 117.52208 * 0.02562 * 17 14 13 19 19 C 1.53002 * 117.49646 * 214.97932 * 17 14 13 20 20 H 1.09002 * 109.82434 * 300.68982 * 19 17 14 21 21 C 1.54386 * 109.90472 * 179.75378 * 19 17 14 22 22 C 1.55306 * 102.25271 * 219.08621 * 21 19 17 23 23 C 1.54950 * 100.94218 * 34.13402 * 22 21 19 24 24 O 1.43241 * 109.83035 * 61.57454 * 19 17 14 25 25 H 0.97001 * 120.00013 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46896 * 60.00331 * 10 9 7 27 27 H 1.09002 * 109.47033 * 299.99830 * 10 9 7 28 28 H 1.08997 * 109.46697 * 60.00328 * 11 10 9 29 29 H 1.09002 * 109.47144 * 299.99710 * 11 10 9 30 30 H 1.08992 * 109.47504 * 59.99944 * 12 11 10 31 31 H 1.09002 * 109.47083 * 299.99647 * 12 11 10 32 32 H 1.00899 * 110.99956 * 56.04667 * 13 12 11 33 33 H 1.09000 * 117.49711 * 145.02234 * 16 14 13 34 34 H 1.08999 * 117.51491 * 359.97438 * 16 14 13 35 35 H 1.09000 * 110.84933 * 337.27932 * 21 19 17 36 36 H 1.09001 * 110.84623 * 100.89979 * 21 19 17 37 37 H 1.09002 * 111.12884 * 276.21730 * 22 21 19 38 38 H 1.09000 * 111.12229 * 152.04837 * 22 21 19 39 39 H 1.08992 * 110.31012 * 204.63970 * 23 22 21 40 40 H 1.09000 * 110.39363 * 82.50862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9792 -5.3243 -0.0001 12 6 3.1513 -6.3077 0.0005 13 7 2.6361 -7.6834 0.0005 14 6 3.7359 -8.6574 0.0005 15 1 4.7313 -8.2427 0.1597 16 6 3.6134 -9.8613 -0.9358 17 6 3.4492 -10.0465 0.5741 18 1 2.4446 -10.2383 0.9511 19 6 4.5818 -10.7474 1.3271 20 1 5.4411 -10.8734 0.6685 21 6 4.1030 -12.1253 1.8327 22 6 4.7661 -12.2106 3.2345 23 6 4.7201 -10.7250 3.6726 24 8 4.9566 -9.9725 2.4720 25 1 -0.4850 0.8401 -0.0004 26 1 3.1244 -3.7314 0.8905 27 1 3.1244 -3.7314 -0.8895 28 1 1.3709 -5.4840 -0.8903 29 1 1.3704 -5.4847 0.8897 30 1 3.7593 -6.1478 0.8909 31 1 3.7605 -6.1475 -0.8890 32 1 2.0169 -7.8376 -0.7811 33 1 4.5283 -10.2387 -1.3926 34 1 2.7167 -9.9311 -1.5515 35 1 3.0164 -12.1521 1.9153 36 1 4.4636 -12.9234 1.1838 37 1 5.7937 -12.5671 3.1620 38 1 4.1815 -12.8371 3.9082 39 1 5.5006 -10.5225 4.4059 40 1 3.7414 -10.4809 4.0855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390772204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:09 Heat of formation + Delta-G solvation = -61.676390 kcal Electronic energy + Delta-G solvation = -17771.861890 eV Core-core repulsion = 14904.780541 eV Total energy + Delta-G solvation = -2867.081349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.64008 -38.67998 -36.16218 -34.61404 -33.05435 -32.46058 -29.76275 -27.85709 -26.05747 -24.16263 -22.88711 -22.49243 -22.05513 -21.12511 -19.55041 -17.65521 -17.30036 -16.94137 -16.90701 -16.45282 -16.11183 -15.93495 -15.16387 -14.77630 -14.70379 -14.21927 -13.91786 -13.68940 -13.27727 -13.19759 -13.05830 -12.92787 -12.63418 -12.52785 -12.44720 -12.38428 -12.15566 -11.94339 -11.71154 -11.52631 -11.33506 -11.16064 -11.05018 -10.44445 -10.33233 -9.16307 -8.67916 -8.38257 -6.14777 1.30934 1.38062 1.49053 1.73140 2.27270 2.59668 2.95828 3.00886 3.21602 3.32439 3.62541 3.75003 3.95787 3.96707 4.07439 4.10513 4.23894 4.29425 4.30491 4.38623 4.43859 4.49214 4.59574 4.72798 4.77096 4.83472 4.84664 4.90180 4.93147 5.01498 5.05333 5.17864 5.25764 5.28667 5.34391 5.39166 6.05924 6.16573 6.17635 6.41809 7.03857 8.71533 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.038123 B = 0.002525 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.285386 B =11087.982391 C =11395.117704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.072 0.928 9 S -0.198 6.198 10 C -0.087 4.087 11 C -0.083 4.083 12 C 0.080 3.920 13 N -0.665 5.665 14 C 0.023 3.977 15 H 0.100 0.900 16 C -0.175 4.175 17 C -0.157 4.157 18 H 0.100 0.900 19 C 0.105 3.895 20 H 0.083 0.917 21 C -0.143 4.143 22 C -0.150 4.150 23 C 0.039 3.961 24 O -0.403 6.403 25 H 0.272 0.728 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.348 0.652 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.436 -26.317 1.813 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.031 5.969 10 C -0.237 4.237 11 C -0.122 4.122 12 C -0.051 4.051 13 N -0.295 5.295 14 C -0.088 4.088 15 H 0.118 0.882 16 C -0.214 4.214 17 C -0.177 4.177 18 H 0.119 0.881 19 C 0.048 3.952 20 H 0.101 0.899 21 C -0.181 4.181 22 C -0.188 4.188 23 C -0.037 4.037 24 O -0.323 6.323 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.168 0.832 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.135 -26.190 2.487 27.849 hybrid contribution 1.602 1.363 -0.741 2.230 sum 10.736 -24.828 1.746 27.106 Atomic orbital electron populations 1.70164 1.07689 1.28516 1.48028 1.26101 0.96083 1.03191 0.93750 0.84938 0.78371 0.76522 0.78354 1.18708 1.19523 1.19626 1.23071 0.94715 0.91969 1.58808 0.90973 1.84631 1.14059 1.01221 1.97030 1.23142 1.00147 0.97498 1.02888 1.21124 0.97882 0.90467 1.02756 1.21806 0.95724 0.86899 1.00656 1.60106 1.17810 1.01952 1.49659 1.22327 0.94396 0.87433 1.04609 0.88206 1.23591 1.04437 1.01676 0.91648 1.22957 0.99795 0.99346 0.95604 0.88138 1.22410 0.95078 0.90169 0.87567 0.89874 1.23161 1.01753 0.96169 0.96972 1.23276 1.02579 0.96128 0.96789 1.23537 1.01233 0.91187 0.87742 1.88462 1.85865 1.42816 1.15197 0.91928 0.92143 0.91816 0.91426 0.91759 0.91556 0.94289 0.83237 0.87169 0.87500 0.90247 0.88282 0.89651 0.88367 0.89217 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.70 13.22 21.65 0.29 -55.41 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 44.72 29.55 68.60 2.03 46.75 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -31.84 9.50 67.95 0.65 -31.20 16 8 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 9 S -0.20 -10.87 21.44 -56.49 -1.21 -12.08 16 10 C -0.09 -3.65 5.67 71.98 0.41 -3.25 16 11 C -0.08 -2.82 5.48 30.60 0.17 -2.65 16 12 C 0.08 2.23 5.54 86.30 0.48 2.71 16 13 N -0.66 -16.55 6.78 -491.55 -3.33 -19.88 16 14 C 0.02 0.50 5.97 44.92 0.27 0.77 16 15 H 0.10 2.37 7.90 -2.39 -0.02 2.35 16 16 C -0.17 -2.71 9.88 30.60 0.30 -2.41 16 17 C -0.16 -2.94 5.31 -10.79 -0.06 -3.00 16 18 H 0.10 2.04 7.84 -2.39 -0.02 2.02 16 19 C 0.11 1.79 3.71 31.07 0.12 1.91 16 20 H 0.08 1.28 7.93 -2.39 -0.02 1.27 16 21 C -0.14 -1.66 6.55 31.86 0.21 -1.46 16 22 C -0.15 -1.60 7.16 32.05 0.23 -1.37 16 23 C 0.04 0.64 7.78 72.65 0.57 1.21 16 24 O -0.40 -9.17 10.96 -148.98 -1.63 -10.81 16 25 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 26 H 0.06 2.53 8.14 -2.40 -0.02 2.51 16 27 H 0.06 2.59 8.14 -2.39 -0.02 2.58 16 28 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.35 7.70 8.52 -89.69 -0.76 6.94 16 33 H 0.11 1.38 8.06 -2.39 -0.02 1.36 16 34 H 0.11 1.49 8.09 -2.39 -0.02 1.47 16 35 H 0.08 0.94 7.65 -2.39 -0.02 0.92 16 36 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -69.61 342.96 0.17 -69.44 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.24 Total: 19.49 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 3.80 Total: -37.49 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -3.05 Total: -75.29 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -1.63 Total: -10.81 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -10.87 SS G_CDS: -1.21 Total: -12.08 kcal Total: -69.61 0.17 -69.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390772204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.761 kcal (2) G-P(sol) polarization free energy of solvation -69.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds