Wall clock time and date at job start Mon Mar 30 2020 05:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 109.46722 * 2 1 4 4 C 1.81404 * 102.99575 * 243.61407 * 2 1 3 5 5 C 1.53003 * 112.84954 * 53.96025 * 4 2 1 6 6 N 1.46900 * 109.47017 * 68.39838 * 5 4 2 7 7 C 1.46899 * 110.99698 * 174.19146 * 6 5 4 8 8 C 1.52996 * 109.47079 * 185.02821 * 7 6 5 9 9 C 1.50701 * 115.55336 * 281.92518 * 8 7 6 10 10 H 1.07996 * 119.99948 * 143.91296 * 9 8 7 11 11 C 1.37876 * 120.00061 * 323.91858 * 9 8 7 12 12 N 1.31520 * 119.99896 * 339.71545 * 11 9 8 13 13 Si 1.86801 * 120.00517 * 159.72005 * 11 9 8 14 14 H 1.48508 * 109.46665 * 4.99924 * 13 11 9 15 15 H 1.48498 * 109.47162 * 124.99500 * 13 11 9 16 16 H 1.48494 * 109.47225 * 245.00083 * 13 11 9 17 17 C 1.53004 * 117.50092 * 136.21664 * 8 7 6 18 18 C 1.53001 * 60.00146 * 252.51359 * 17 8 7 19 19 C 1.53779 * 113.61452 * 282.76125 * 4 2 1 20 20 C 1.53957 * 87.02199 * 220.05112 * 19 4 2 21 21 C 1.53785 * 113.61173 * 185.15356 * 4 2 1 22 22 H 1.09000 * 109.47449 * 61.47671 * 1 2 3 23 23 H 1.09002 * 109.47424 * 181.47665 * 1 2 3 24 24 H 1.09003 * 109.47074 * 301.47284 * 1 2 3 25 25 H 1.09006 * 109.46487 * 188.39594 * 5 4 2 26 26 H 1.08998 * 109.47224 * 308.39368 * 5 4 2 27 27 H 1.00907 * 110.99584 * 298.14306 * 6 5 4 28 28 H 1.09000 * 109.47323 * 305.02921 * 7 6 5 29 29 H 1.09006 * 109.47367 * 65.03181 * 7 6 5 30 30 H 0.96994 * 120.00400 * 185.03212 * 12 11 9 31 31 H 1.09004 * 117.49506 * 0.02562 * 17 8 7 32 32 H 1.08995 * 117.50032 * 145.01745 * 17 8 7 33 33 H 1.09000 * 117.49406 * 252.51402 * 18 17 8 34 34 H 1.08994 * 117.52207 * 107.47829 * 18 17 8 35 35 H 1.09000 * 113.61425 * 334.56609 * 19 4 2 36 36 H 1.09001 * 113.61406 * 105.47187 * 19 4 2 37 37 H 1.09004 * 113.53434 * 270.81659 * 20 19 4 38 38 H 1.09000 * 113.74657 * 139.94160 * 20 19 4 39 39 H 1.09001 * 113.61431 * 254.52690 * 21 4 2 40 40 H 1.09003 * 113.61263 * 25.35375 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2219 -0.7855 -1.5834 5 6 1.5473 -0.1044 -2.7758 6 7 2.1268 1.2316 -2.9688 7 6 1.6017 1.8621 -4.1873 8 6 2.3182 3.1934 -4.4221 9 6 1.8502 4.3430 -3.5674 10 1 2.5599 5.0751 -3.2115 11 6 0.5161 4.4601 -3.2398 12 7 -0.3947 3.8437 -3.9611 13 14 0.0020 5.4941 -1.7715 14 1 1.1936 6.1752 -1.2043 15 1 -0.9897 6.5109 -2.2050 16 1 -0.6064 4.6184 -0.7380 17 6 2.7687 3.5112 -5.8493 18 6 3.8038 3.1417 -4.7848 19 6 2.0572 -2.3144 -1.5731 20 6 3.3499 -2.3789 -2.4068 21 6 3.7279 -1.0254 -1.7821 22 1 -0.3634 0.4907 -0.9029 23 1 -0.3634 -1.0273 0.0265 24 1 -0.3633 0.5366 0.8765 25 1 1.7059 -0.7024 -3.6733 26 1 0.4781 -0.0126 -2.5847 27 1 1.9662 1.8154 -2.1616 28 1 1.7708 1.2033 -5.0391 29 1 0.5325 2.0403 -4.0725 30 1 -1.3365 3.9840 -3.7762 31 1 2.5542 2.7720 -6.6211 32 1 2.7264 4.5519 -6.1704 33 1 4.4424 3.9395 -4.4056 34 1 4.2706 2.1594 -4.8558 35 1 2.1544 -2.7574 -0.5819 36 1 1.1736 -2.6620 -2.1084 37 1 3.1773 -2.3305 -3.4820 38 1 4.0163 -3.1929 -2.1212 39 1 4.1911 -0.3338 -2.4859 40 1 4.2829 -1.1139 -0.8481 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393695311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:16 Heat of formation + Delta-G solvation = 14.713587 kcal Electronic energy + Delta-G solvation = -20037.661062 eV Core-core repulsion = 17173.892230 eV Total energy + Delta-G solvation = -2863.768831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.95906 -36.76985 -35.32262 -33.56142 -32.12436 -28.97333 -27.45878 -25.59808 -25.46903 -24.05485 -22.33042 -20.90563 -19.21683 -18.71675 -17.02830 -16.17126 -16.09397 -15.25893 -14.75979 -14.57361 -14.15581 -14.00179 -13.70618 -13.51372 -12.93755 -12.67684 -12.34881 -12.32750 -12.18916 -11.72685 -11.50482 -11.42288 -11.17773 -11.05761 -10.84486 -10.69490 -10.34234 -10.31516 -10.18408 -10.09956 -9.36746 -9.12572 -9.01263 -8.57190 -8.07764 -7.96359 -7.27752 -6.03013 -3.99254 1.86261 2.82477 3.28549 3.37438 3.46523 3.97768 4.41586 4.59137 4.65857 4.87288 4.94250 5.02142 5.32721 5.37390 5.40037 5.59057 5.67032 5.75556 5.79014 5.86514 5.93592 6.03101 6.15693 6.26709 6.30834 6.40680 6.54991 6.57073 6.73256 6.89775 6.97730 7.05272 7.21909 7.49865 7.62619 8.01807 8.14287 8.44915 8.55612 8.95117 9.55194 10.96647 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.007852 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.484308 B = 3565.229643 C = 4528.111218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.491 4.491 2 S 1.230 4.770 3 O -0.829 6.829 4 C -0.393 4.393 5 C 0.087 3.913 6 N -0.685 5.685 7 C 0.086 3.914 8 C 0.059 3.941 9 C -0.482 4.482 10 H 0.061 0.939 11 C 0.070 3.930 12 N -0.877 5.877 13 Si 0.883 3.117 14 H -0.269 1.269 15 H -0.286 1.286 16 H -0.283 1.283 17 C -0.205 4.205 18 C -0.194 4.194 19 C -0.100 4.100 20 C -0.132 4.132 21 C -0.093 4.093 22 H 0.085 0.915 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.019 0.981 27 H 0.354 0.646 28 H 0.030 0.970 29 H 0.083 0.917 30 H 0.259 0.741 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -16.235 7.944 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.428 4.572 3 O -0.824 6.824 4 C -0.492 4.492 5 C -0.044 4.044 6 N -0.319 5.319 7 C -0.042 4.042 8 C 0.058 3.942 9 C -0.519 4.519 10 H 0.079 0.921 11 C -0.132 4.132 12 N -0.515 5.515 13 Si 0.711 3.289 14 H -0.194 1.194 15 H -0.213 1.213 16 H -0.209 1.209 17 C -0.243 4.243 18 C -0.231 4.231 19 C -0.139 4.139 20 C -0.171 4.171 21 C -0.132 4.132 22 H 0.104 0.896 23 H 0.126 0.874 24 H 0.117 0.883 25 H 0.084 0.916 26 H 0.037 0.963 27 H 0.175 0.825 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.513 -16.128 8.381 18.512 hybrid contribution -2.223 1.995 -0.868 3.110 sum 1.291 -14.133 7.513 16.058 Atomic orbital electron populations 1.27661 1.22458 1.07448 1.07275 1.69989 0.86730 1.00272 1.00197 1.93231 1.72443 1.35527 1.81187 1.28579 1.03865 1.03091 1.13673 1.21564 0.94181 0.92852 0.95770 1.60412 1.61019 1.02469 1.08006 1.21645 1.01118 0.92410 0.89022 1.18819 0.89854 0.93573 0.91912 1.20616 0.92846 1.08888 1.29530 0.92131 1.24941 0.96552 0.95678 0.96072 1.69923 1.00529 1.43345 1.37692 0.86665 0.78637 0.80018 0.83613 1.19367 1.21252 1.20898 1.22957 1.07479 0.99622 0.94277 1.22682 0.94505 0.99747 1.06187 1.22622 0.98952 0.91453 1.00915 1.22794 0.96997 0.97385 0.99876 1.22422 0.91998 0.97434 1.01330 0.89582 0.87393 0.88336 0.91573 0.96259 0.82471 0.95175 0.89971 0.93102 0.92125 0.90713 0.91226 0.91254 0.89042 0.91144 0.90298 0.91558 0.89381 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -6.27 10.33 101.05 1.04 -5.23 16 2 S 1.23 16.14 13.11 -107.50 -1.41 14.73 16 3 O -0.83 -17.27 16.28 -35.23 -0.57 -17.84 16 4 C -0.39 -5.21 0.96 -89.80 -0.09 -5.30 16 5 C 0.09 1.54 4.87 -3.82 -0.02 1.52 16 6 N -0.69 -15.39 6.03 -113.78 -0.69 -16.07 16 7 C 0.09 2.16 5.31 -3.83 -0.02 2.14 16 8 C 0.06 1.58 1.91 -155.66 -0.30 1.28 16 9 C -0.48 -14.11 8.96 -34.44 -0.31 -14.42 16 10 H 0.06 1.81 7.89 -52.49 -0.41 1.40 16 11 C 0.07 2.00 5.08 -17.82 -0.09 1.91 16 12 N -0.88 -25.44 11.05 55.43 0.61 -24.83 16 13 Si 0.88 22.67 29.59 -169.99 -5.03 17.64 16 14 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 17 C -0.20 -5.07 9.88 -26.73 -0.26 -5.33 16 18 C -0.19 -4.68 9.94 -26.73 -0.27 -4.95 16 19 C -0.10 -0.90 7.26 -25.83 -0.19 -1.09 16 20 C -0.13 -1.34 7.74 -25.82 -0.20 -1.54 16 21 C -0.09 -1.18 7.16 -25.91 -0.19 -1.37 16 22 H 0.09 1.40 6.68 -51.92 -0.35 1.05 16 23 H 0.11 0.96 8.14 -51.92 -0.42 0.53 16 24 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 25 H 0.07 1.13 7.26 -51.93 -0.38 0.75 16 26 H 0.02 0.36 6.34 -51.93 -0.33 0.03 16 27 H 0.35 8.98 6.68 -39.29 -0.26 8.72 16 28 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 29 H 0.08 2.27 5.40 -51.93 -0.28 1.99 16 30 H 0.26 7.15 8.32 -40.82 -0.34 6.81 16 31 H 0.06 1.40 8.10 -51.93 -0.42 0.98 16 32 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 33 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.08 0.89 7.63 -51.93 -0.40 0.49 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.41 7.82 -51.93 -0.41 1.00 16 40 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -34.86 329.96 -9.57 -44.43 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.58 Total: 9.34 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: -0.88 Total: -32.37 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: -0.07 Total: -40.90 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.57 Total: -17.84 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Atomic # 16 Polarization: 16.14 SS G_CDS: -1.41 Total: 14.73 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.86 -9.57 -44.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393695311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.146 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds