Wall clock time and date at job start Mon Mar 30 2020 05:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 109.46722 * 2 1 4 4 C 1.81404 * 102.99575 * 243.61407 * 2 1 3 5 5 C 1.53003 * 112.84954 * 53.96025 * 4 2 1 6 6 N 1.46900 * 109.47017 * 68.39838 * 5 4 2 7 7 C 1.46899 * 110.99698 * 174.19146 * 6 5 4 8 8 C 1.52996 * 109.47079 * 185.02821 * 7 6 5 9 9 C 1.50701 * 115.55336 * 281.92518 * 8 7 6 10 10 H 1.07996 * 119.99948 * 143.91296 * 9 8 7 11 11 C 1.37876 * 120.00061 * 323.91858 * 9 8 7 12 12 N 1.31520 * 119.99896 * 339.71545 * 11 9 8 13 13 Si 1.86801 * 120.00517 * 159.72005 * 11 9 8 14 14 H 1.48508 * 109.46665 * 4.99924 * 13 11 9 15 15 H 1.48498 * 109.47162 * 124.99500 * 13 11 9 16 16 H 1.48494 * 109.47225 * 245.00083 * 13 11 9 17 17 C 1.53004 * 117.50092 * 136.21664 * 8 7 6 18 18 C 1.53001 * 60.00146 * 252.51359 * 17 8 7 19 19 C 1.53779 * 113.61452 * 282.76125 * 4 2 1 20 20 C 1.53957 * 87.02199 * 220.05112 * 19 4 2 21 21 C 1.53785 * 113.61173 * 185.15356 * 4 2 1 22 22 H 1.09000 * 109.47449 * 61.47671 * 1 2 3 23 23 H 1.09002 * 109.47424 * 181.47665 * 1 2 3 24 24 H 1.09003 * 109.47074 * 301.47284 * 1 2 3 25 25 H 1.09006 * 109.46487 * 188.39594 * 5 4 2 26 26 H 1.08998 * 109.47224 * 308.39368 * 5 4 2 27 27 H 1.00907 * 110.99584 * 298.14306 * 6 5 4 28 28 H 1.09000 * 109.47323 * 305.02921 * 7 6 5 29 29 H 1.09006 * 109.47367 * 65.03181 * 7 6 5 30 30 H 0.96994 * 120.00400 * 185.03212 * 12 11 9 31 31 H 1.09004 * 117.49506 * 0.02562 * 17 8 7 32 32 H 1.08995 * 117.50032 * 145.01745 * 17 8 7 33 33 H 1.09000 * 117.49406 * 252.51402 * 18 17 8 34 34 H 1.08994 * 117.52207 * 107.47829 * 18 17 8 35 35 H 1.09000 * 113.61425 * 334.56609 * 19 4 2 36 36 H 1.09001 * 113.61406 * 105.47187 * 19 4 2 37 37 H 1.09004 * 113.53434 * 270.81659 * 20 19 4 38 38 H 1.09000 * 113.74657 * 139.94160 * 20 19 4 39 39 H 1.09001 * 113.61431 * 254.52690 * 21 4 2 40 40 H 1.09003 * 113.61263 * 25.35375 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2219 -0.7855 -1.5834 5 6 1.5473 -0.1044 -2.7758 6 7 2.1268 1.2316 -2.9688 7 6 1.6017 1.8621 -4.1873 8 6 2.3182 3.1934 -4.4221 9 6 1.8502 4.3430 -3.5674 10 1 2.5599 5.0751 -3.2115 11 6 0.5161 4.4601 -3.2398 12 7 -0.3947 3.8437 -3.9611 13 14 0.0020 5.4941 -1.7715 14 1 1.1936 6.1752 -1.2043 15 1 -0.9897 6.5109 -2.2050 16 1 -0.6064 4.6184 -0.7380 17 6 2.7687 3.5112 -5.8493 18 6 3.8038 3.1417 -4.7848 19 6 2.0572 -2.3144 -1.5731 20 6 3.3499 -2.3789 -2.4068 21 6 3.7279 -1.0254 -1.7821 22 1 -0.3634 0.4907 -0.9029 23 1 -0.3634 -1.0273 0.0265 24 1 -0.3633 0.5366 0.8765 25 1 1.7059 -0.7024 -3.6733 26 1 0.4781 -0.0126 -2.5847 27 1 1.9662 1.8154 -2.1616 28 1 1.7708 1.2033 -5.0391 29 1 0.5325 2.0403 -4.0725 30 1 -1.3365 3.9840 -3.7762 31 1 2.5542 2.7720 -6.6211 32 1 2.7264 4.5519 -6.1704 33 1 4.4424 3.9395 -4.4056 34 1 4.2706 2.1594 -4.8558 35 1 2.1544 -2.7574 -0.5819 36 1 1.1736 -2.6620 -2.1084 37 1 3.1773 -2.3305 -3.4820 38 1 4.0163 -3.1929 -2.1212 39 1 4.1911 -0.3338 -2.4859 40 1 4.2829 -1.1139 -0.8481 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393695311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:15 Heat of formation + Delta-G solvation = -10.150461 kcal Electronic energy + Delta-G solvation = -20038.739248 eV Core-core repulsion = 17173.892230 eV Total energy + Delta-G solvation = -2864.847017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.03358 -38.68446 -36.72305 -35.20942 -34.33584 -30.12086 -28.86782 -27.69083 -26.41042 -25.49912 -23.81338 -22.88027 -21.07851 -19.96385 -18.34161 -17.96340 -17.34364 -16.84057 -16.53956 -15.99068 -15.61107 -15.50393 -15.36439 -14.91774 -14.51375 -14.15577 -13.68830 -13.59334 -13.40703 -13.16339 -13.06201 -12.99817 -12.91790 -12.76029 -12.54863 -12.32611 -12.18161 -12.11809 -11.40584 -11.17982 -11.14089 -11.03576 -10.64260 -10.50219 -10.13797 -9.16938 -9.13145 -8.22469 -6.25524 0.80470 1.20561 1.25983 1.38052 1.77156 2.26685 2.80679 2.88967 3.28103 3.67769 3.72160 3.82680 3.99971 4.09738 4.21537 4.23743 4.43594 4.47486 4.51672 4.62446 4.68781 4.74189 4.91286 4.95140 4.96234 5.03880 5.06873 5.09862 5.19994 5.25057 5.36852 5.39304 5.45658 5.51469 5.69281 5.86406 6.32270 6.36213 6.50088 6.74313 7.30032 8.74919 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.007852 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.484308 B = 3565.229643 C = 4528.111218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.490 4.490 2 S 1.286 4.714 3 O -0.913 6.913 4 C -0.402 4.402 5 C 0.083 3.917 6 N -0.687 5.687 7 C 0.097 3.903 8 C 0.027 3.973 9 C -0.507 4.507 10 H 0.042 0.958 11 C 0.035 3.965 12 N -0.892 5.892 13 Si 0.933 3.067 14 H -0.275 1.275 15 H -0.270 1.270 16 H -0.285 1.285 17 C -0.198 4.198 18 C -0.176 4.176 19 C -0.080 4.080 20 C -0.125 4.125 21 C -0.102 4.102 22 H 0.047 0.953 23 H 0.156 0.844 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.011 0.989 27 H 0.336 0.664 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.262 0.738 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 -19.000 9.006 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.488 4.512 3 O -0.908 6.908 4 C -0.501 4.501 5 C -0.047 4.047 6 N -0.319 5.319 7 C -0.032 4.032 8 C 0.027 3.973 9 C -0.544 4.544 10 H 0.060 0.940 11 C -0.165 4.165 12 N -0.530 5.530 13 Si 0.759 3.241 14 H -0.199 1.199 15 H -0.195 1.195 16 H -0.211 1.211 17 C -0.237 4.237 18 C -0.214 4.214 19 C -0.119 4.119 20 C -0.163 4.163 21 C -0.141 4.141 22 H 0.066 0.934 23 H 0.174 0.826 24 H 0.120 0.880 25 H 0.089 0.911 26 H 0.029 0.971 27 H 0.155 0.845 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.158 0.842 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.385 -18.894 9.437 21.389 hybrid contribution -2.196 2.793 -1.244 3.764 sum 1.189 -16.101 8.192 18.104 Atomic orbital electron populations 1.27684 1.21408 1.10214 1.05476 1.68884 0.85986 0.97094 0.99285 1.93091 1.75075 1.39501 1.83157 1.28637 1.04493 1.06057 1.10955 1.21712 0.94071 0.90736 0.98194 1.60430 1.61394 1.03842 1.06209 1.21389 0.99220 0.92122 0.90420 1.18970 0.91739 0.93743 0.92883 1.20774 0.93039 1.09709 1.30901 0.93967 1.25464 0.96492 0.96896 0.97690 1.70000 1.00723 1.43935 1.38358 0.85890 0.78292 0.79054 0.80871 1.19928 1.19477 1.21126 1.22939 1.07086 0.99725 0.93942 1.22633 0.93358 1.00340 1.05021 1.22777 0.98713 0.86967 1.03455 1.22750 0.98095 0.96468 0.99005 1.22546 0.91228 0.98333 1.02001 0.93375 0.82591 0.87962 0.91112 0.97075 0.84521 0.94497 0.92800 0.92804 0.90457 0.91399 0.91476 0.89780 0.84230 0.90223 0.91984 0.88497 0.93457 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -11.67 10.33 113.37 1.17 -10.50 16 2 S 1.29 32.20 13.11 -56.49 -0.74 31.46 16 3 O -0.91 -39.03 16.28 -148.98 -2.43 -41.45 16 4 C -0.40 -9.93 0.96 -10.27 -0.01 -9.94 16 5 C 0.08 2.92 4.87 86.30 0.42 3.34 16 6 N -0.69 -31.67 6.03 -513.88 -3.10 -34.77 16 7 C 0.10 4.99 5.31 86.30 0.46 5.45 16 8 C 0.03 1.49 1.91 -52.93 -0.10 1.39 16 9 C -0.51 -30.64 8.96 25.60 0.23 -30.42 16 10 H 0.04 2.62 7.89 -2.91 -0.02 2.60 16 11 C 0.04 2.08 5.08 84.65 0.43 2.51 16 12 N -0.89 -52.77 11.05 21.45 0.24 -52.53 16 13 Si 0.93 47.53 29.59 68.60 2.03 49.56 16 14 H -0.27 -14.12 7.11 99.48 0.71 -13.41 16 15 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 17 C -0.20 -9.85 9.88 30.60 0.30 -9.55 16 18 C -0.18 -8.57 9.94 30.60 0.30 -8.26 16 19 C -0.08 -1.08 7.26 31.18 0.23 -0.85 16 20 C -0.12 -2.09 7.74 31.18 0.24 -1.84 16 21 C -0.10 -2.42 7.16 31.12 0.22 -2.20 16 22 H 0.05 1.55 6.68 -2.39 -0.02 1.54 16 23 H 0.16 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.07 2.39 7.26 -2.38 -0.02 2.37 16 26 H 0.01 0.41 6.34 -2.39 -0.02 0.40 16 27 H 0.34 17.75 6.68 -89.69 -0.60 17.15 16 28 H 0.04 1.79 7.91 -2.39 -0.02 1.77 16 29 H 0.05 3.08 5.40 -2.38 -0.01 3.07 16 30 H 0.26 14.69 8.32 -92.71 -0.77 13.91 16 31 H 0.08 3.53 8.10 -2.38 -0.02 3.51 16 32 H 0.07 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.08 3.80 8.14 -2.39 -0.02 3.78 16 35 H 0.14 0.63 8.10 -2.39 -0.02 0.61 16 36 H 0.08 1.02 8.10 -2.39 -0.02 1.00 16 37 H 0.06 1.26 7.63 -2.38 -0.02 1.24 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 1.51 7.82 -2.39 -0.02 1.50 16 40 H 0.10 1.91 8.10 -2.39 -0.02 1.89 16 Total: -1.00 -79.86 329.96 0.32 -79.55 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.42 Total: 29.05 kcal Atomic # 6 Polarization: -64.76 SS G_CDS: 3.90 Total: -60.87 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -2.86 Total: -87.30 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -2.43 Total: -41.45 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Atomic # 16 Polarization: 32.20 SS G_CDS: -0.74 Total: 31.46 kcal Total: -79.86 0.32 -79.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393695311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.399 kcal (2) G-P(sol) polarization free energy of solvation -79.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds