Wall clock time and date at job start Mon Mar 30 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99775 * 2 1 4 4 H 1.48501 * 109.47099 * 270.00362 * 3 2 1 5 5 H 1.48500 * 109.47109 * 150.00688 * 3 2 1 6 6 H 1.48497 * 109.47119 * 30.00241 * 3 2 1 7 7 C 1.37878 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99977 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99832 * 179.97438 * 7 2 1 10 10 O 1.42899 * 109.46904 * 179.97438 * 9 7 2 11 11 C 1.42908 * 113.99528 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46763 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47818 * 64.99190 * 12 11 10 14 14 C 1.46893 * 111.00562 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47330 * 180.02562 * 14 13 12 16 16 H 1.09004 * 110.01539 * 55.97579 * 15 14 13 17 17 C 1.54267 * 110.03211 * 294.58266 * 15 14 13 18 18 C 1.54890 * 104.19648 * 217.10597 * 17 15 14 19 19 C 1.54893 * 102.74896 * 37.93995 * 18 17 15 20 20 C 1.53881 * 110.03042 * 177.41609 * 15 14 13 21 21 H 1.09004 * 110.02972 * 238.56365 * 20 15 14 22 22 C 1.50697 * 110.03287 * 359.97438 * 20 15 14 23 23 O 1.20831 * 119.99923 * 86.97760 * 22 20 15 24 24 O 1.34231 * 119.99886 * 266.97305 * 22 20 15 25 25 H 0.96993 * 120.00242 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47324 * 299.99916 * 9 7 2 27 27 H 1.09002 * 109.46715 * 59.99909 * 9 7 2 28 28 H 1.08996 * 109.46518 * 299.99235 * 11 10 9 29 29 H 1.08991 * 109.47670 * 59.99830 * 11 10 9 30 30 H 1.08997 * 109.47254 * 184.99477 * 12 11 10 31 31 H 1.09007 * 109.46915 * 304.99544 * 12 11 10 32 32 H 1.00905 * 111.00155 * 303.95910 * 13 12 11 33 33 H 1.09000 * 109.47098 * 300.00340 * 14 13 12 34 34 H 1.09003 * 109.47110 * 59.99699 * 14 13 12 35 35 H 1.09001 * 110.48625 * 335.78047 * 17 15 14 36 36 H 1.08999 * 110.48679 * 98.29145 * 17 15 14 37 37 H 1.09001 * 110.75846 * 156.25406 * 18 17 15 38 38 H 1.08997 * 110.75480 * 279.62703 * 18 17 15 39 39 H 1.09006 * 110.48645 * 80.73622 * 19 18 17 40 40 H 1.08994 * 110.48799 * 203.24655 * 19 18 17 41 41 H 0.96703 * 116.99642 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 3.5467 1.4402 0.6999 6 1 1.4465 2.6526 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4125 -2.6541 -0.0009 12 6 5.8070 -4.1323 -0.0015 13 7 5.3677 -4.7561 -1.2568 14 6 5.7308 -6.1790 -1.2930 15 6 5.2585 -6.7925 -2.6127 16 1 5.6738 -6.2357 -3.4527 17 6 3.7174 -6.7791 -2.6799 18 6 3.3565 -8.1086 -3.3880 19 6 4.3948 -9.0992 -2.8050 20 6 5.6893 -8.2676 -2.6921 21 1 6.3135 -8.4274 -3.5713 22 6 6.4440 -8.6529 -1.4460 23 8 5.8438 -9.0424 -0.4723 24 8 7.7830 -8.5634 -1.4177 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6800 -0.8911 27 1 3.8752 -0.6804 0.8889 28 1 5.8151 -2.1707 -0.8910 29 1 5.8153 -2.1705 0.8889 30 1 6.8898 -4.2195 0.0880 31 1 5.3311 -4.6357 0.8402 32 1 4.3758 -4.6321 -1.3945 33 1 6.8132 -6.2798 -1.2127 34 1 5.2549 -6.6967 -0.4602 35 1 3.2919 -6.7536 -1.6767 36 1 3.3683 -5.9269 -3.2631 37 1 2.3426 -8.4183 -3.1348 38 1 3.4750 -8.0158 -4.4675 39 1 4.0788 -9.4483 -1.8219 40 1 4.5385 -9.9426 -3.4803 41 1 8.2230 -8.8220 -0.5963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395402291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:40 Heat of formation + Delta-G solvation = -157.043115 kcal Electronic energy + Delta-G solvation = -21088.315451 eV Core-core repulsion = 17774.345819 eV Total energy + Delta-G solvation = -3313.969632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01765 -38.33727 -37.22232 -36.26625 -35.14542 -32.64557 -30.86762 -29.82994 -28.35411 -26.95342 -24.07221 -23.10022 -21.92611 -21.52428 -20.74041 -19.51572 -18.24995 -17.01619 -16.84931 -16.42636 -15.98594 -15.45103 -15.27611 -15.03868 -14.70057 -14.43223 -13.73658 -13.42373 -13.35276 -13.20030 -12.64745 -12.28975 -12.11291 -11.95815 -11.83181 -11.61793 -11.36588 -11.23920 -11.10781 -10.94276 -10.88293 -10.76642 -10.66107 -10.55878 -10.36845 -9.86989 -9.19489 -8.86095 -8.47883 -8.29001 -6.12282 -4.11410 1.97564 2.79130 3.24817 3.31739 3.33340 4.04572 4.20281 4.35214 4.41535 4.68017 4.74425 4.98429 5.08010 5.14035 5.18963 5.19393 5.30823 5.35326 5.40387 5.42463 5.62249 5.63982 5.66619 5.80045 5.87957 5.92250 6.02283 6.05861 6.10864 6.19525 6.22350 6.30134 6.61004 6.99544 7.11854 7.56242 7.60711 7.66746 8.00218 8.65396 8.98269 9.47059 11.00737 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.003531 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.046214 B = 7928.629916 C = 8592.125416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.384 6.384 11 C 0.058 3.942 12 C 0.065 3.935 13 N -0.684 5.684 14 C 0.049 3.951 15 C -0.075 4.075 16 H 0.097 0.903 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.082 4.082 21 H 0.105 0.895 22 C 0.487 3.513 23 O -0.513 6.513 24 O -0.518 6.518 25 H 0.266 0.734 26 H 0.000 1.000 27 H 0.002 0.998 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.358 0.642 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.835 -17.087 -6.362 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.304 6.304 11 C -0.020 4.020 12 C -0.064 4.064 13 N -0.317 5.317 14 C -0.080 4.080 15 C -0.094 4.094 16 H 0.115 0.885 17 C -0.162 4.162 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.102 4.102 21 H 0.123 0.877 22 C 0.330 3.670 23 O -0.401 6.401 24 O -0.330 6.330 25 H 0.076 0.924 26 H 0.017 0.983 27 H 0.019 0.981 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.178 0.822 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 14.731 -16.900 -6.794 23.426 hybrid contribution 0.351 0.650 1.267 1.466 sum 15.083 -16.250 -5.527 22.850 Atomic orbital electron populations 1.69874 1.06063 1.27104 1.50355 1.24764 0.94800 0.98766 0.94607 0.86843 0.80323 0.83734 0.78803 1.19877 1.19134 1.20803 1.20889 0.88285 0.95287 1.51254 0.90028 1.20580 0.96091 0.79403 0.94362 1.87848 1.17666 1.29764 1.95094 1.22374 0.84870 0.95088 0.99631 1.21935 0.99510 0.94253 0.90735 1.60479 1.23929 1.12002 1.35310 1.22294 1.00262 0.89556 0.95900 1.21766 0.96905 0.91425 0.99339 0.88487 1.22499 0.93774 0.98165 1.01744 1.22468 0.98807 0.94612 0.99948 1.22479 0.92533 0.97509 1.02977 1.21789 0.96662 0.97732 0.93983 0.87652 1.23419 0.80387 0.72941 0.90268 1.90722 1.69266 1.43213 1.36876 1.84585 1.22253 1.80812 1.45316 0.92362 0.98254 0.98054 0.93330 0.93951 0.90653 0.94624 0.82201 0.91237 0.94529 0.91056 0.90125 0.90796 0.91050 0.89603 0.90932 0.73406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -15.45 9.99 -34.44 -0.34 -15.80 16 8 H 0.08 2.65 8.06 -52.48 -0.42 2.22 16 9 C 0.17 4.36 4.76 36.01 0.17 4.53 16 10 O -0.38 -8.90 9.85 -35.23 -0.35 -9.25 16 11 C 0.06 1.04 6.28 37.16 0.23 1.27 16 12 C 0.06 0.98 6.10 -3.83 -0.02 0.96 16 13 N -0.68 -10.09 6.50 -113.79 -0.74 -10.83 16 14 C 0.05 0.62 3.85 -3.83 -0.01 0.60 16 15 C -0.08 -0.79 3.17 -89.50 -0.28 -1.07 16 16 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.12 -1.34 5.46 -25.07 -0.14 -1.48 16 18 C -0.12 -1.05 6.91 -24.74 -0.17 -1.22 16 19 C -0.12 -1.02 6.31 -25.07 -0.16 -1.18 16 20 C -0.08 -0.74 3.40 -90.65 -0.31 -1.05 16 21 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 22 C 0.49 5.06 5.17 36.00 0.19 5.25 16 23 O -0.51 -6.89 15.73 -18.75 -0.30 -7.19 16 24 O -0.52 -4.19 12.98 -39.26 -0.51 -4.70 16 25 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 26 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 27 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.36 5.87 7.42 -39.29 -0.29 5.58 16 33 H 0.07 0.83 7.03 -51.93 -0.36 0.46 16 34 H 0.04 0.52 7.04 -51.93 -0.37 0.15 16 35 H 0.07 0.89 7.80 -51.93 -0.41 0.48 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.90 6.88 -51.93 -0.36 0.55 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.41 1.73 9.10 45.56 0.41 2.14 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -33.63 331.92 -7.68 -41.32 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.95 Total: 2.87 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -0.95 Total: -7.15 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.03 Total: -37.70 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.15 Total: -21.13 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.63 -7.68 -41.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395402291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.727 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds