Wall clock time and date at job start Mon Mar 30 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99775 * 2 1 4 4 H 1.48501 * 109.47099 * 270.00362 * 3 2 1 5 5 H 1.48500 * 109.47109 * 150.00688 * 3 2 1 6 6 H 1.48497 * 109.47119 * 30.00241 * 3 2 1 7 7 C 1.37878 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99977 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99832 * 179.97438 * 7 2 1 10 10 O 1.42899 * 109.46904 * 179.97438 * 9 7 2 11 11 C 1.42908 * 113.99528 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46763 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47818 * 64.99190 * 12 11 10 14 14 C 1.46893 * 111.00562 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47330 * 180.02562 * 14 13 12 16 16 H 1.09004 * 110.01539 * 55.97579 * 15 14 13 17 17 C 1.54267 * 110.03211 * 294.58266 * 15 14 13 18 18 C 1.54890 * 104.19648 * 217.10597 * 17 15 14 19 19 C 1.54893 * 102.74896 * 37.93995 * 18 17 15 20 20 C 1.53881 * 110.03042 * 177.41609 * 15 14 13 21 21 H 1.09004 * 110.02972 * 238.56365 * 20 15 14 22 22 C 1.50697 * 110.03287 * 359.97438 * 20 15 14 23 23 O 1.20831 * 119.99923 * 86.97760 * 22 20 15 24 24 O 1.34231 * 119.99886 * 266.97305 * 22 20 15 25 25 H 0.96993 * 120.00242 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47324 * 299.99916 * 9 7 2 27 27 H 1.09002 * 109.46715 * 59.99909 * 9 7 2 28 28 H 1.08996 * 109.46518 * 299.99235 * 11 10 9 29 29 H 1.08991 * 109.47670 * 59.99830 * 11 10 9 30 30 H 1.08997 * 109.47254 * 184.99477 * 12 11 10 31 31 H 1.09007 * 109.46915 * 304.99544 * 12 11 10 32 32 H 1.00905 * 111.00155 * 303.95910 * 13 12 11 33 33 H 1.09000 * 109.47098 * 300.00340 * 14 13 12 34 34 H 1.09003 * 109.47110 * 59.99699 * 14 13 12 35 35 H 1.09001 * 110.48625 * 335.78047 * 17 15 14 36 36 H 1.08999 * 110.48679 * 98.29145 * 17 15 14 37 37 H 1.09001 * 110.75846 * 156.25406 * 18 17 15 38 38 H 1.08997 * 110.75480 * 279.62703 * 18 17 15 39 39 H 1.09006 * 110.48645 * 80.73622 * 19 18 17 40 40 H 1.08994 * 110.48799 * 203.24655 * 19 18 17 41 41 H 0.96703 * 116.99642 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 3.5467 1.4402 0.6999 6 1 1.4465 2.6526 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4125 -2.6541 -0.0009 12 6 5.8070 -4.1323 -0.0015 13 7 5.3677 -4.7561 -1.2568 14 6 5.7308 -6.1790 -1.2930 15 6 5.2585 -6.7925 -2.6127 16 1 5.6738 -6.2357 -3.4527 17 6 3.7174 -6.7791 -2.6799 18 6 3.3565 -8.1086 -3.3880 19 6 4.3948 -9.0992 -2.8050 20 6 5.6893 -8.2676 -2.6921 21 1 6.3135 -8.4274 -3.5713 22 6 6.4440 -8.6529 -1.4460 23 8 5.8438 -9.0424 -0.4723 24 8 7.7830 -8.5634 -1.4177 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6800 -0.8911 27 1 3.8752 -0.6804 0.8889 28 1 5.8151 -2.1707 -0.8910 29 1 5.8153 -2.1705 0.8889 30 1 6.8898 -4.2195 0.0880 31 1 5.3311 -4.6357 0.8402 32 1 4.3758 -4.6321 -1.3945 33 1 6.8132 -6.2798 -1.2127 34 1 5.2549 -6.6967 -0.4602 35 1 3.2919 -6.7536 -1.6767 36 1 3.3683 -5.9269 -3.2631 37 1 2.3426 -8.4183 -3.1348 38 1 3.4750 -8.0158 -4.4675 39 1 4.0788 -9.4483 -1.8219 40 1 4.5385 -9.9426 -3.4803 41 1 8.2230 -8.8220 -0.5963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395402291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:39 Heat of formation + Delta-G solvation = -182.441118 kcal Electronic energy + Delta-G solvation = -21089.416791 eV Core-core repulsion = 17774.345819 eV Total energy + Delta-G solvation = -3315.070972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82581 -39.29511 -38.71428 -37.09173 -36.37395 -34.82999 -32.03006 -30.69241 -30.06827 -28.37080 -25.04234 -24.01479 -23.92383 -22.85667 -21.55590 -20.29705 -19.09256 -19.01335 -17.91158 -17.47979 -17.30400 -16.88802 -16.41979 -16.28076 -16.13448 -15.56461 -15.07189 -14.94629 -14.49066 -14.23450 -14.10597 -13.69662 -13.40114 -13.21937 -12.83755 -12.73188 -12.64717 -12.52255 -12.38500 -12.04411 -11.95273 -11.84440 -11.79483 -11.63481 -11.53698 -11.38574 -11.29443 -10.93077 -10.37671 -9.48956 -8.37912 -6.46060 1.17247 1.33536 1.36519 1.47306 2.11981 2.29160 2.94851 3.01701 3.07994 3.42914 3.59231 3.86723 4.04014 4.21518 4.25692 4.35137 4.41211 4.44646 4.48051 4.50625 4.52754 4.58739 4.63046 4.73240 4.75027 4.83789 4.88874 5.00167 5.01179 5.18163 5.21749 5.27803 5.42518 5.42785 5.61876 5.90802 5.98281 6.27885 6.57681 6.72401 6.98658 7.18515 8.79215 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.003531 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.046214 B = 7928.629916 C = 8592.125416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.258 1.258 5 H -0.246 1.246 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.029 0.971 9 C 0.181 3.819 10 O -0.409 6.409 11 C 0.052 3.948 12 C 0.069 3.931 13 N -0.686 5.686 14 C 0.055 3.945 15 C -0.071 4.071 16 H 0.109 0.891 17 C -0.129 4.129 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.079 4.079 21 H 0.136 0.864 22 C 0.489 3.511 23 O -0.551 6.551 24 O -0.511 6.511 25 H 0.273 0.727 26 H 0.012 0.988 27 H 0.011 0.989 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.022 0.978 32 H 0.344 0.656 33 H 0.081 0.919 34 H 0.014 0.986 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.630 -16.391 -7.528 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.183 1.183 5 H -0.170 1.170 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.048 0.952 9 C 0.106 3.894 10 O -0.328 6.328 11 C -0.025 4.025 12 C -0.061 4.061 13 N -0.318 5.318 14 C -0.074 4.074 15 C -0.090 4.090 16 H 0.127 0.873 17 C -0.166 4.166 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.099 4.099 21 H 0.154 0.846 22 C 0.334 3.666 23 O -0.442 6.442 24 O -0.324 6.324 25 H 0.082 0.918 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.125 0.875 31 H 0.040 0.960 32 H 0.163 0.837 33 H 0.099 0.901 34 H 0.032 0.968 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 17.572 -16.232 -7.958 25.211 hybrid contribution -0.522 0.325 1.655 1.766 sum 17.050 -15.908 -6.303 24.155 Atomic orbital electron populations 1.70030 1.08270 1.28807 1.51036 1.25836 0.95788 1.03408 0.93396 0.85600 0.79384 0.77458 0.79847 1.18268 1.16963 1.19872 1.21162 0.90964 0.93830 1.52446 0.95218 1.20298 0.93218 0.80838 0.95063 1.87816 1.21251 1.28485 1.95289 1.22686 0.81866 0.97144 1.00816 1.21975 1.01139 0.92492 0.90451 1.60566 1.22863 1.13417 1.34952 1.22304 1.00624 0.88077 0.96425 1.21749 0.96269 0.92564 0.98403 0.87319 1.22481 0.94432 0.99360 1.00359 1.22466 0.98801 0.93113 1.00864 1.22457 0.92308 0.98215 1.02271 1.21862 0.97091 0.96380 0.94556 0.84646 1.23666 0.80921 0.72011 0.90045 1.90718 1.70132 1.45021 1.38288 1.84545 1.21106 1.80276 1.46522 0.91779 0.96985 0.97136 0.92383 0.92298 0.87463 0.95999 0.83749 0.90073 0.96750 0.93842 0.90813 0.91039 0.88956 0.91995 0.88422 0.71464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.96 43.47 27.47 68.60 1.88 45.35 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.25 -10.32 6.54 99.48 0.65 -9.67 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.55 -33.51 9.99 25.60 0.26 -33.26 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 9 C 0.18 9.17 4.76 71.24 0.34 9.51 16 10 O -0.41 -19.04 9.85 -148.98 -1.47 -20.51 16 11 C 0.05 1.77 6.28 71.98 0.45 2.22 16 12 C 0.07 2.00 6.10 86.30 0.53 2.53 16 13 N -0.69 -20.01 6.50 -513.91 -3.34 -23.35 16 14 C 0.05 1.34 3.85 86.30 0.33 1.67 16 15 C -0.07 -1.41 3.17 -10.07 -0.03 -1.44 16 16 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 17 C -0.13 -2.85 5.46 31.67 0.17 -2.68 16 18 C -0.12 -1.91 6.91 31.89 0.22 -1.69 16 19 C -0.12 -1.87 6.31 31.67 0.20 -1.67 16 20 C -0.08 -1.28 3.40 -10.81 -0.04 -1.32 16 21 H 0.14 1.42 8.14 -2.38 -0.02 1.40 16 22 C 0.49 9.56 5.17 71.23 0.37 9.93 16 23 O -0.55 -14.89 15.73 21.95 0.35 -14.54 16 24 O -0.51 -7.13 12.98 -51.42 -0.67 -7.80 16 25 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 26 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 27 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.02 0.69 8.14 -2.38 -0.02 0.68 16 32 H 0.34 11.68 7.42 -89.69 -0.67 11.01 16 33 H 0.08 1.79 7.03 -2.39 -0.02 1.77 16 34 H 0.01 0.42 7.04 -2.39 -0.02 0.40 16 35 H 0.04 1.18 7.80 -2.39 -0.02 1.16 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.32 6.88 -2.38 -0.02 1.31 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.42 2.76 9.10 -74.06 -0.67 2.08 16 Total: -1.00 -75.17 331.92 -0.05 -75.22 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.37 Total: 19.78 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.26 Total: -14.91 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -3.04 Total: -82.59 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -1.79 Total: -42.85 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Total: -75.17 -0.05 -75.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395402291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.223 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds