Wall clock time and date at job start Mon Mar 30 2020 05:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46804 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.46573 * 65.00294 * 12 11 10 14 14 C 1.46907 * 110.99994 * 179.97438 * 13 12 11 15 15 C 1.52990 * 109.47473 * 180.02562 * 14 13 12 16 16 H 1.08997 * 110.43794 * 56.08537 * 15 14 13 17 17 C 1.54268 * 110.48757 * 293.54755 * 15 14 13 18 18 C 1.53873 * 106.59951 * 217.71400 * 17 15 14 19 19 C 1.54265 * 106.60113 * 359.97438 * 18 17 15 20 20 C 1.54886 * 110.49033 * 178.77175 * 15 14 13 21 21 H 1.09004 * 110.75471 * 38.30446 * 20 15 14 22 22 C 1.50699 * 110.75629 * 274.93746 * 20 15 14 23 23 O 1.20819 * 119.99859 * 359.97438 * 22 20 15 24 24 O 1.34235 * 119.99963 * 179.97438 * 22 20 15 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.08995 * 109.47224 * 300.00085 * 11 10 9 29 29 H 1.09001 * 109.47248 * 60.00362 * 11 10 9 30 30 H 1.08997 * 109.46956 * 184.99881 * 12 11 10 31 31 H 1.08995 * 109.47420 * 305.00237 * 12 11 10 32 32 H 1.00896 * 111.00478 * 303.94846 * 13 12 11 33 33 H 1.09004 * 109.47117 * 299.99962 * 14 13 12 34 34 H 1.09005 * 109.46627 * 59.99672 * 14 13 12 35 35 H 1.08997 * 110.02806 * 336.99665 * 17 15 14 36 36 H 1.09004 * 110.03398 * 98.37645 * 17 15 14 37 37 H 1.08997 * 110.03604 * 119.28382 * 18 17 15 38 38 H 1.09006 * 110.03333 * 240.66549 * 18 17 15 39 39 H 1.08992 * 110.48778 * 142.28835 * 19 18 17 40 40 H 1.08994 * 110.48626 * 264.80322 * 19 18 17 41 41 H 0.96700 * 116.99754 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 2.1795 -3.5854 -0.0101 11 6 1.5649 -4.8754 -0.0153 12 6 2.6478 -5.9563 -0.0207 13 7 3.4086 -5.8933 1.2343 14 6 4.4594 -6.9194 1.2651 15 6 5.2279 -6.8232 2.5844 16 1 4.5452 -6.9094 3.4297 17 6 6.0119 -5.4966 2.6570 18 6 7.3506 -5.8143 3.3460 19 6 7.3332 -7.3227 3.6686 20 6 6.3232 -7.9160 2.6549 21 1 6.7911 -8.0573 1.6806 22 6 5.7515 -9.2127 3.1675 23 8 4.5808 -9.2841 3.4574 24 8 6.5431 -10.2885 3.3021 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 0.9449 -4.9861 0.8743 29 1 0.9445 -4.9787 -0.9056 30 1 2.1817 -6.9371 -0.1143 31 1 3.3209 -5.7921 -0.8622 32 1 3.7973 -4.9730 1.3758 33 1 4.0055 -7.9069 1.1806 34 1 5.1450 -6.7623 0.4324 35 1 6.1908 -5.1132 1.6525 36 1 5.4545 -4.7649 3.2419 37 1 8.1791 -5.5851 2.6759 38 1 7.4437 -5.2365 4.2656 39 1 8.3220 -7.7562 3.5195 40 1 6.9944 -7.4902 4.6910 41 1 6.1313 -11.0976 3.6350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395402293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:43 Heat of formation + Delta-G solvation = -163.785360 kcal Electronic energy + Delta-G solvation = -20777.930888 eV Core-core repulsion = 17463.668891 eV Total energy + Delta-G solvation = -3314.261997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78196 -38.43055 -37.01459 -36.27614 -35.06872 -32.69626 -30.68461 -29.86694 -27.93411 -26.53318 -24.26706 -22.71135 -22.34532 -21.42626 -20.56165 -19.66789 -18.22581 -17.30113 -16.48778 -16.06199 -15.84953 -15.44848 -15.18260 -14.85374 -14.58396 -14.31648 -13.71769 -13.45461 -13.38812 -13.07087 -12.73844 -12.32736 -12.08312 -11.72338 -11.69208 -11.41699 -11.40185 -11.17312 -11.02643 -10.83081 -10.76142 -10.68355 -10.63685 -10.50582 -10.41942 -9.98585 -9.07962 -8.81343 -8.16231 -8.14929 -6.10004 -4.11670 1.98102 2.78082 3.29290 3.35675 3.41659 4.04029 4.23257 4.35638 4.50208 4.66445 4.97045 5.00896 5.11726 5.13036 5.21761 5.25498 5.26505 5.39146 5.41551 5.55572 5.59510 5.65425 5.75725 5.89090 5.89513 5.99029 6.11033 6.15930 6.23355 6.25814 6.32363 6.40143 7.13794 7.26588 7.46082 7.66027 7.71488 7.80097 8.16735 8.59488 9.01814 9.53111 11.01609 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025954 B = 0.003308 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.568216 B = 8462.420960 C = 9297.659606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.400 6.400 11 C 0.062 3.938 12 C 0.066 3.934 13 N -0.685 5.685 14 C 0.067 3.933 15 C -0.074 4.074 16 H 0.099 0.901 17 C -0.125 4.125 18 C -0.123 4.123 19 C -0.108 4.108 20 C -0.085 4.085 21 H 0.113 0.887 22 C 0.483 3.517 23 O -0.505 6.505 24 O -0.519 6.519 25 H 0.263 0.737 26 H 0.006 0.994 27 H 0.004 0.996 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.355 0.645 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.814 -18.269 5.700 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.122 3.878 10 O -0.320 6.320 11 C -0.016 4.016 12 C -0.063 4.063 13 N -0.318 5.318 14 C -0.063 4.063 15 C -0.093 4.093 16 H 0.117 0.883 17 C -0.163 4.163 18 C -0.160 4.160 19 C -0.146 4.146 20 C -0.104 4.104 21 H 0.131 0.869 22 C 0.324 3.676 23 O -0.391 6.391 24 O -0.331 6.331 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.175 0.825 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 14.252 -18.135 5.973 23.826 hybrid contribution 0.283 0.589 -0.485 0.814 sum 14.535 -17.546 5.488 23.436 Atomic orbital electron populations 1.69979 1.06106 1.27018 1.50626 1.24960 0.94976 0.99444 0.95208 0.86291 0.79977 0.82657 0.77612 1.19513 1.20888 1.20829 1.21091 0.94010 0.89397 1.50664 0.91581 1.20178 0.88723 0.83472 0.95391 1.87776 1.35798 1.13153 1.95240 1.22299 0.94555 0.85203 0.99548 1.21942 0.95865 0.98058 0.90431 1.60410 1.26828 1.09100 1.35439 1.21957 0.92644 0.96782 0.94894 1.21966 0.94975 0.92272 1.00047 0.88308 1.22255 0.95351 0.97065 1.01623 1.22123 0.98026 0.94844 1.01044 1.22305 0.98251 0.95962 0.98099 1.22100 0.98430 0.88538 1.01352 0.86895 1.23444 0.84486 0.85351 0.74280 1.90761 1.17933 1.84366 1.46082 1.84551 1.46457 1.22806 1.79334 0.92718 0.97605 0.97846 0.93493 0.94181 0.90767 0.94876 0.82484 0.91319 0.95467 0.91232 0.90384 0.91344 0.91177 0.90432 0.91088 0.73392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.51 -15.16 9.43 -34.44 -0.32 -15.48 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.46 5.69 36.01 0.20 5.66 16 10 O -0.40 -9.65 9.85 -35.23 -0.35 -9.99 16 11 C 0.06 1.19 6.28 37.16 0.23 1.42 16 12 C 0.07 1.05 6.11 -3.82 -0.02 1.03 16 13 N -0.68 -10.63 6.50 -113.78 -0.74 -11.37 16 14 C 0.07 0.84 5.05 -3.83 -0.02 0.82 16 15 C -0.07 -0.82 2.19 -88.97 -0.19 -1.01 16 16 H 0.10 1.31 7.44 -51.93 -0.39 0.92 16 17 C -0.13 -1.29 5.54 -25.61 -0.14 -1.43 16 18 C -0.12 -0.99 6.80 -25.61 -0.17 -1.16 16 19 C -0.11 -0.82 6.26 -25.06 -0.16 -0.98 16 20 C -0.08 -0.75 2.83 -89.77 -0.25 -1.01 16 21 H 0.11 0.86 8.06 -51.93 -0.42 0.44 16 22 C 0.48 4.84 7.63 36.01 0.27 5.11 16 23 O -0.50 -6.83 16.48 -18.74 -0.31 -7.14 16 24 O -0.52 -3.80 13.42 -39.27 -0.53 -4.33 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.36 5.94 7.49 -39.29 -0.29 5.64 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.32 8.05 -51.93 -0.42 -0.10 16 35 H 0.07 0.74 7.77 -51.93 -0.40 0.34 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 41 H 0.41 1.38 9.10 45.56 0.41 1.80 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -33.53 341.32 -7.86 -41.39 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.12 Total: 1.35 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.67 Total: -5.53 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.00 Total: -37.73 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.18 Total: -21.46 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.53 -7.86 -41.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395402293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.398 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds