Wall clock time and date at job start Mon Mar 30 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46804 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.46573 * 65.00294 * 12 11 10 14 14 C 1.46907 * 110.99994 * 179.97438 * 13 12 11 15 15 C 1.52990 * 109.47473 * 180.02562 * 14 13 12 16 16 H 1.08997 * 110.43794 * 56.08537 * 15 14 13 17 17 C 1.54268 * 110.48757 * 293.54755 * 15 14 13 18 18 C 1.53873 * 106.59951 * 217.71400 * 17 15 14 19 19 C 1.54265 * 106.60113 * 359.97438 * 18 17 15 20 20 C 1.54886 * 110.49033 * 178.77175 * 15 14 13 21 21 H 1.09004 * 110.75471 * 38.30446 * 20 15 14 22 22 C 1.50699 * 110.75629 * 274.93746 * 20 15 14 23 23 O 1.20819 * 119.99859 * 359.97438 * 22 20 15 24 24 O 1.34235 * 119.99963 * 179.97438 * 22 20 15 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.08995 * 109.47224 * 300.00085 * 11 10 9 29 29 H 1.09001 * 109.47248 * 60.00362 * 11 10 9 30 30 H 1.08997 * 109.46956 * 184.99881 * 12 11 10 31 31 H 1.08995 * 109.47420 * 305.00237 * 12 11 10 32 32 H 1.00896 * 111.00478 * 303.94846 * 13 12 11 33 33 H 1.09004 * 109.47117 * 299.99962 * 14 13 12 34 34 H 1.09005 * 109.46627 * 59.99672 * 14 13 12 35 35 H 1.08997 * 110.02806 * 336.99665 * 17 15 14 36 36 H 1.09004 * 110.03398 * 98.37645 * 17 15 14 37 37 H 1.08997 * 110.03604 * 119.28382 * 18 17 15 38 38 H 1.09006 * 110.03333 * 240.66549 * 18 17 15 39 39 H 1.08992 * 110.48778 * 142.28835 * 19 18 17 40 40 H 1.08994 * 110.48626 * 264.80322 * 19 18 17 41 41 H 0.96700 * 116.99754 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 2.1795 -3.5854 -0.0101 11 6 1.5649 -4.8754 -0.0153 12 6 2.6478 -5.9563 -0.0207 13 7 3.4086 -5.8933 1.2343 14 6 4.4594 -6.9194 1.2651 15 6 5.2279 -6.8232 2.5844 16 1 4.5452 -6.9094 3.4297 17 6 6.0119 -5.4966 2.6570 18 6 7.3506 -5.8143 3.3460 19 6 7.3332 -7.3227 3.6686 20 6 6.3232 -7.9160 2.6549 21 1 6.7911 -8.0573 1.6806 22 6 5.7515 -9.2127 3.1675 23 8 4.5808 -9.2841 3.4574 24 8 6.5431 -10.2885 3.3021 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 0.9449 -4.9861 0.8743 29 1 0.9445 -4.9787 -0.9056 30 1 2.1817 -6.9371 -0.1143 31 1 3.3209 -5.7921 -0.8622 32 1 3.7973 -4.9730 1.3758 33 1 4.0055 -7.9069 1.1806 34 1 5.1450 -6.7623 0.4324 35 1 6.1908 -5.1132 1.6525 36 1 5.4545 -4.7649 3.2419 37 1 8.1791 -5.5851 2.6759 38 1 7.4437 -5.2365 4.2656 39 1 8.3220 -7.7562 3.5195 40 1 6.9944 -7.4902 4.6910 41 1 6.1313 -11.0976 3.6350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395402293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:42 Heat of formation + Delta-G solvation = -188.069420 kcal Electronic energy + Delta-G solvation = -20778.983924 eV Core-core repulsion = 17463.668891 eV Total energy + Delta-G solvation = -3315.315033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.56065 -39.34596 -38.66239 -37.02865 -36.39151 -34.86127 -31.86529 -30.62985 -29.60172 -28.19932 -25.20655 -24.52576 -23.55673 -22.81436 -21.29694 -20.50660 -18.97127 -18.64868 -18.09692 -17.54246 -17.01610 -16.80000 -16.49363 -16.37570 -15.67472 -15.40609 -15.26600 -14.98366 -14.17637 -14.10867 -14.03302 -13.66209 -13.27202 -13.09940 -12.99971 -12.74710 -12.58546 -12.55100 -12.42705 -12.14461 -12.07754 -11.76228 -11.69270 -11.59827 -11.46192 -11.26916 -11.23231 -10.88223 -10.24539 -9.36226 -8.32163 -6.44740 1.21778 1.40521 1.42247 1.56830 2.13381 2.34856 3.01826 3.08180 3.20269 3.47057 3.64335 3.86931 4.13519 4.23959 4.31390 4.36594 4.40839 4.45989 4.50586 4.54475 4.59993 4.69174 4.73342 4.81551 4.83834 4.92521 4.94977 5.08399 5.17126 5.21145 5.24896 5.36505 5.47388 5.54889 5.64088 5.95210 6.09082 6.41892 6.52273 6.80780 7.02092 7.27174 8.80601 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025954 B = 0.003308 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.568216 B = 8462.420960 C = 9297.659606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.210 3.790 10 O -0.407 6.407 11 C 0.055 3.945 12 C 0.075 3.925 13 N -0.699 5.699 14 C 0.070 3.930 15 C -0.072 4.072 16 H 0.072 0.928 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.102 4.102 20 C -0.081 4.081 21 H 0.133 0.867 22 C 0.489 3.511 23 O -0.548 6.548 24 O -0.510 6.510 25 H 0.270 0.730 26 H -0.017 1.017 27 H -0.015 1.015 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.346 0.654 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.134 -18.466 5.515 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.135 3.865 10 O -0.327 6.327 11 C -0.023 4.023 12 C -0.054 4.054 13 N -0.331 5.331 14 C -0.059 4.059 15 C -0.091 4.091 16 H 0.090 0.910 17 C -0.163 4.163 18 C -0.156 4.156 19 C -0.139 4.139 20 C -0.101 4.101 21 H 0.151 0.849 22 C 0.332 3.668 23 O -0.438 6.438 24 O -0.323 6.323 25 H 0.079 0.921 26 H 0.001 0.999 27 H 0.003 0.997 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.165 0.835 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 16.592 -18.389 5.791 25.436 hybrid contribution -0.479 0.522 -0.415 0.821 sum 16.113 -17.867 5.376 24.653 Atomic orbital electron populations 1.70090 1.07870 1.28595 1.50601 1.26010 0.95971 1.03543 0.93936 0.85101 0.78739 0.77144 0.78199 1.18546 1.19724 1.19755 1.21415 0.94158 0.90667 1.52069 0.91749 1.19807 0.88620 0.84711 0.93318 1.87742 1.35469 1.14253 1.95204 1.22592 0.96074 0.83934 0.99669 1.21893 0.95078 0.97567 0.90836 1.60432 1.28167 1.09238 1.35295 1.21984 0.92209 0.95445 0.96225 1.21845 0.95209 0.93883 0.98142 0.90982 1.22222 0.96460 0.96185 1.01411 1.22110 0.96883 0.95314 1.01256 1.22302 0.98852 0.95404 0.97379 1.22113 0.97712 0.87430 1.02823 0.84879 1.23591 0.83877 0.86077 0.73224 1.90756 1.19777 1.85106 1.48150 1.84504 1.45868 1.23132 1.78834 0.92067 0.99938 0.99733 0.94173 0.93230 0.88353 0.94414 0.83544 0.91708 0.94033 0.91574 0.92184 0.89863 0.90862 0.88161 0.91521 0.71306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.99 44.48 29.54 68.60 2.03 46.51 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -32.73 9.43 25.60 0.24 -32.49 16 8 H 0.06 3.79 7.81 -2.91 -0.02 3.77 16 9 C 0.21 12.09 5.69 71.24 0.41 12.50 16 10 O -0.41 -20.10 9.85 -148.98 -1.47 -21.57 16 11 C 0.05 2.13 6.28 71.98 0.45 2.58 16 12 C 0.08 2.34 6.11 86.31 0.53 2.87 16 13 N -0.70 -21.77 6.50 -513.88 -3.34 -25.11 16 14 C 0.07 1.72 5.05 86.30 0.44 2.16 16 15 C -0.07 -1.57 2.19 -9.72 -0.02 -1.59 16 16 H 0.07 1.98 7.44 -2.39 -0.02 1.96 16 17 C -0.13 -2.53 5.54 31.32 0.17 -2.35 16 18 C -0.12 -1.68 6.80 31.32 0.21 -1.47 16 19 C -0.10 -1.30 6.26 31.68 0.20 -1.10 16 20 C -0.08 -1.30 2.83 -10.24 -0.03 -1.33 16 21 H 0.13 1.63 8.06 -2.38 -0.02 1.61 16 22 C 0.49 9.13 7.63 71.24 0.54 9.68 16 23 O -0.55 -14.75 16.48 21.98 0.36 -14.39 16 24 O -0.51 -6.29 13.42 -51.46 -0.69 -6.98 16 25 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 26 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 27 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.35 11.81 7.49 -89.70 -0.67 11.13 16 33 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.04 0.91 8.05 -2.38 -0.02 0.89 16 35 H 0.07 1.37 7.77 -2.39 -0.02 1.35 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.92 8.04 -2.39 -0.02 0.90 16 41 H 0.43 1.98 9.10 -74.06 -0.67 1.31 16 Total: -1.00 -72.85 341.32 0.45 -72.40 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.33 Total: 15.52 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 3.60 Total: -9.89 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -3.06 Total: -81.61 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.80 Total: -42.93 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -72.85 0.45 -72.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395402293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.668 kcal (2) G-P(sol) polarization free energy of solvation -72.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds