Wall clock time and date at job start Mon Mar 30 2020 05:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00024 * 2 1 4 4 H 1.48496 * 109.47495 * 270.00158 * 3 2 1 5 5 H 1.48502 * 109.47112 * 30.00292 * 3 2 1 6 6 H 1.48501 * 109.46851 * 150.00008 * 3 2 1 7 7 C 1.37875 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00005 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00014 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.47025 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00043 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47308 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47203 * 64.99645 * 12 11 10 14 14 C 1.46900 * 111.00294 * 179.97438 * 13 12 11 15 15 H 1.09008 * 109.46618 * 35.00297 * 14 13 12 16 16 C 1.53002 * 109.47411 * 275.00691 * 14 13 12 17 17 C 1.52996 * 109.47063 * 299.99636 * 16 14 13 18 18 C 1.53007 * 109.46866 * 300.00272 * 17 16 14 19 19 C 1.52998 * 109.47152 * 60.00009 * 18 17 16 20 20 H 1.09000 * 109.46861 * 60.00087 * 19 18 17 21 21 C 1.50706 * 109.46927 * 179.97438 * 19 18 17 22 22 O 1.20825 * 119.99859 * 119.99464 * 21 19 18 23 23 O 1.34224 * 120.00295 * 300.00423 * 21 19 18 24 24 C 1.52996 * 109.47228 * 299.99769 * 19 18 17 25 25 H 0.97006 * 119.99775 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.47093 * 60.00119 * 9 7 2 27 27 H 1.09000 * 109.47441 * 299.99567 * 9 7 2 28 28 H 1.09000 * 109.47050 * 60.00035 * 11 10 9 29 29 H 1.08997 * 109.47073 * 300.00430 * 11 10 9 30 30 H 1.08998 * 109.46999 * 305.00103 * 12 11 10 31 31 H 1.08999 * 109.47031 * 185.00304 * 12 11 10 32 32 H 1.00896 * 111.00575 * 303.96104 * 13 12 11 33 33 H 1.09000 * 109.46676 * 179.97438 * 16 14 13 34 34 H 1.09004 * 109.46969 * 59.99536 * 16 14 13 35 35 H 1.08997 * 109.47192 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.47091 * 59.99493 * 17 16 14 37 37 H 1.09000 * 109.46629 * 299.99504 * 18 17 16 38 38 H 1.09005 * 109.46611 * 179.97438 * 18 17 16 39 39 H 0.96700 * 117.00196 * 179.97438 * 23 21 19 40 40 H 1.08997 * 109.47192 * 180.02562 * 24 19 18 41 41 H 1.09003 * 109.46861 * 300.00372 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5651 -4.8754 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 7 3.4080 -5.8883 1.2516 14 6 4.4587 -6.9143 1.2871 15 1 4.8607 -7.0574 0.2840 16 6 3.8679 -8.2321 1.7925 17 6 3.3036 -8.0313 3.2003 18 6 4.4245 -7.5813 4.1396 19 6 5.0151 -6.2635 3.6341 20 1 4.2355 -5.5023 3.6080 21 6 6.1187 -5.8200 4.5597 22 8 7.2417 -5.6792 4.1368 23 8 5.8541 -5.5816 5.8538 24 6 5.5795 -6.4643 2.2263 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5562 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 0.9446 -4.9819 -0.8931 29 1 0.9452 -4.9829 0.8868 30 1 3.3216 -5.7953 -0.8453 31 1 2.1819 -6.9374 -0.0937 32 1 3.7965 -4.9675 1.3898 33 1 4.6475 -8.9935 1.8183 34 1 3.0694 -8.5527 1.1232 35 1 2.8832 -8.9702 3.5605 36 1 2.5240 -7.2700 3.1741 37 1 5.2040 -8.3427 4.1658 38 1 4.0223 -7.4378 5.1425 39 1 6.5942 -5.2995 6.4085 40 1 6.0007 -5.5257 1.8664 41 1 6.3591 -7.2257 2.2526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395414266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:24 Heat of formation + Delta-G solvation = -164.601681 kcal Electronic energy + Delta-G solvation = -21253.046579 eV Core-core repulsion = 17938.749184 eV Total energy + Delta-G solvation = -3314.297396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68235 -38.75819 -36.85133 -36.20412 -34.39709 -32.67600 -31.23306 -30.42599 -27.67597 -26.33683 -24.64836 -22.43299 -22.34989 -21.52680 -20.99932 -19.14010 -18.12315 -16.94115 -16.42174 -16.12012 -15.72404 -15.33642 -15.06947 -14.94226 -14.44535 -14.12445 -13.97764 -13.44463 -13.23071 -12.81510 -12.53306 -12.37569 -12.24948 -11.93515 -11.65845 -11.57930 -11.41784 -11.17441 -10.92428 -10.81685 -10.75600 -10.59576 -10.55554 -10.24376 -10.19809 -9.99350 -9.11177 -8.82946 -8.21740 -8.17480 -6.11384 -4.13164 2.12481 2.94592 3.29906 3.35102 3.40295 4.25568 4.34660 4.52093 4.60527 4.78610 4.92984 5.04186 5.13914 5.23746 5.25240 5.32388 5.36137 5.51152 5.52884 5.56894 5.72198 5.77685 5.88855 5.97796 6.01544 6.07719 6.12482 6.15389 6.24395 6.34329 6.38840 6.45697 7.10651 7.22010 7.43365 7.62839 7.78501 7.79626 8.14888 8.57257 8.99989 9.51854 11.00080 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017084 B = 0.004213 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.612336 B = 6644.314297 C = 7722.791785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.400 6.400 11 C 0.062 3.938 12 C 0.066 3.934 13 N -0.681 5.681 14 C 0.086 3.914 15 H 0.048 0.952 16 C -0.108 4.108 17 C -0.110 4.110 18 C -0.104 4.104 19 C -0.074 4.074 20 H 0.123 0.877 21 C 0.482 3.518 22 O -0.520 6.520 23 O -0.515 6.515 24 C -0.104 4.104 25 H 0.264 0.736 26 H 0.003 0.997 27 H 0.006 0.994 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.355 0.645 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.406 0.594 40 H 0.073 0.927 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.097 -17.369 7.762 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.123 3.877 10 O -0.320 6.320 11 C -0.016 4.016 12 C -0.063 4.063 13 N -0.315 5.315 14 C -0.024 4.024 15 H 0.066 0.934 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.142 4.142 19 C -0.093 4.093 20 H 0.141 0.859 21 C 0.325 3.675 22 O -0.409 6.409 23 O -0.327 6.327 24 C -0.142 4.142 25 H 0.073 0.927 26 H 0.021 0.979 27 H 0.024 0.976 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.176 0.824 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.265 0.735 40 H 0.092 0.908 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.668 -17.675 7.743 20.764 hybrid contribution 1.188 1.518 -0.304 1.951 sum 8.856 -16.157 7.439 19.870 Atomic orbital electron populations 1.69966 1.06094 1.27138 1.50535 1.24939 0.94958 0.99399 0.95144 0.86355 0.79683 0.82347 0.78216 1.20496 1.21060 1.19652 1.21049 0.93982 0.89429 1.50841 0.91663 1.20166 0.88680 0.83451 0.95357 1.87786 1.35790 1.13153 1.95228 1.22293 0.94557 0.85282 0.99460 1.21985 0.95903 0.97935 0.90454 1.60532 1.26766 1.08708 1.35473 1.21511 0.90640 0.93093 0.97185 0.93389 1.21552 1.00058 0.95878 0.97136 1.21406 0.98015 1.01490 0.93828 1.21476 0.98593 0.94311 0.99824 1.21034 0.95230 1.00780 0.92289 0.85945 1.23796 0.89839 0.72724 0.81190 1.90706 1.24600 1.48807 1.76739 1.84564 1.45884 1.80024 1.22207 1.21617 0.97325 1.02879 0.92374 0.92661 0.97883 0.97610 0.94288 0.93576 0.94800 0.90711 0.82428 0.92263 0.91870 0.92337 0.89720 0.92155 0.90831 0.73528 0.90821 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -15.08 9.43 -34.44 -0.32 -15.41 16 8 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 9 C 0.20 5.38 5.69 36.00 0.20 5.59 16 10 O -0.40 -9.33 9.85 -35.23 -0.35 -9.68 16 11 C 0.06 1.11 6.28 37.16 0.23 1.35 16 12 C 0.07 0.94 5.90 -3.83 -0.02 0.92 16 13 N -0.68 -9.11 4.82 -106.73 -0.51 -9.62 16 14 C 0.09 0.94 2.82 -67.71 -0.19 0.75 16 15 H 0.05 0.54 7.80 -51.92 -0.40 0.13 16 16 C -0.11 -1.01 5.53 -26.73 -0.15 -1.16 16 17 C -0.11 -1.02 5.77 -26.73 -0.15 -1.17 16 18 C -0.10 -0.96 5.14 -26.73 -0.14 -1.09 16 19 C -0.07 -0.81 2.47 -91.77 -0.23 -1.03 16 20 H 0.12 1.45 7.48 -51.93 -0.39 1.06 16 21 C 0.48 5.68 7.63 36.01 0.27 5.96 16 22 O -0.52 -7.62 16.74 -18.75 -0.31 -7.93 16 23 O -0.52 -4.88 13.33 -39.24 -0.52 -5.41 16 24 C -0.10 -1.16 3.87 -26.73 -0.10 -1.26 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.00 0.09 8.14 -51.92 -0.42 -0.33 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 31 H 0.07 0.90 7.43 -51.93 -0.39 0.51 16 32 H 0.36 5.48 7.75 -39.29 -0.30 5.17 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.92 7.60 -51.93 -0.39 0.53 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.41 2.16 9.10 45.56 0.41 2.58 16 40 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -32.59 334.96 -7.66 -40.25 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.04 Total: 1.65 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -0.69 Total: -5.03 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.22 Total: -35.75 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -1.18 Total: -23.02 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.59 -7.66 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395414266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.351 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds