Wall clock time and date at job start Mon Mar 30 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00024 * 2 1 4 4 H 1.48496 * 109.47495 * 270.00158 * 3 2 1 5 5 H 1.48502 * 109.47112 * 30.00292 * 3 2 1 6 6 H 1.48501 * 109.46851 * 150.00008 * 3 2 1 7 7 C 1.37875 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00005 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00014 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.47025 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00043 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47308 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47203 * 64.99645 * 12 11 10 14 14 C 1.46900 * 111.00294 * 179.97438 * 13 12 11 15 15 H 1.09008 * 109.46618 * 35.00297 * 14 13 12 16 16 C 1.53002 * 109.47411 * 275.00691 * 14 13 12 17 17 C 1.52996 * 109.47063 * 299.99636 * 16 14 13 18 18 C 1.53007 * 109.46866 * 300.00272 * 17 16 14 19 19 C 1.52998 * 109.47152 * 60.00009 * 18 17 16 20 20 H 1.09000 * 109.46861 * 60.00087 * 19 18 17 21 21 C 1.50706 * 109.46927 * 179.97438 * 19 18 17 22 22 O 1.20825 * 119.99859 * 119.99464 * 21 19 18 23 23 O 1.34224 * 120.00295 * 300.00423 * 21 19 18 24 24 C 1.52996 * 109.47228 * 299.99769 * 19 18 17 25 25 H 0.97006 * 119.99775 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.47093 * 60.00119 * 9 7 2 27 27 H 1.09000 * 109.47441 * 299.99567 * 9 7 2 28 28 H 1.09000 * 109.47050 * 60.00035 * 11 10 9 29 29 H 1.08997 * 109.47073 * 300.00430 * 11 10 9 30 30 H 1.08998 * 109.46999 * 305.00103 * 12 11 10 31 31 H 1.08999 * 109.47031 * 185.00304 * 12 11 10 32 32 H 1.00896 * 111.00575 * 303.96104 * 13 12 11 33 33 H 1.09000 * 109.46676 * 179.97438 * 16 14 13 34 34 H 1.09004 * 109.46969 * 59.99536 * 16 14 13 35 35 H 1.08997 * 109.47192 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.47091 * 59.99493 * 17 16 14 37 37 H 1.09000 * 109.46629 * 299.99504 * 18 17 16 38 38 H 1.09005 * 109.46611 * 179.97438 * 18 17 16 39 39 H 0.96700 * 117.00196 * 179.97438 * 23 21 19 40 40 H 1.08997 * 109.47192 * 180.02562 * 24 19 18 41 41 H 1.09003 * 109.46861 * 300.00372 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5651 -4.8754 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 7 3.4080 -5.8883 1.2516 14 6 4.4587 -6.9143 1.2871 15 1 4.8607 -7.0574 0.2840 16 6 3.8679 -8.2321 1.7925 17 6 3.3036 -8.0313 3.2003 18 6 4.4245 -7.5813 4.1396 19 6 5.0151 -6.2635 3.6341 20 1 4.2355 -5.5023 3.6080 21 6 6.1187 -5.8200 4.5597 22 8 7.2417 -5.6792 4.1368 23 8 5.8541 -5.5816 5.8538 24 6 5.5795 -6.4643 2.2263 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5562 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 0.9446 -4.9819 -0.8931 29 1 0.9452 -4.9829 0.8868 30 1 3.3216 -5.7953 -0.8453 31 1 2.1819 -6.9374 -0.0937 32 1 3.7965 -4.9675 1.3898 33 1 4.6475 -8.9935 1.8183 34 1 3.0694 -8.5527 1.1232 35 1 2.8832 -8.9702 3.5605 36 1 2.5240 -7.2700 3.1741 37 1 5.2040 -8.3427 4.1658 38 1 4.0223 -7.4378 5.1425 39 1 6.5942 -5.2995 6.4085 40 1 6.0007 -5.5257 1.8664 41 1 6.3591 -7.2257 2.2526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395414266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:23 Heat of formation + Delta-G solvation = -187.351038 kcal Electronic energy + Delta-G solvation = -21254.033066 eV Core-core repulsion = 17938.749184 eV Total energy + Delta-G solvation = -3315.283882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59367 -39.71392 -38.53474 -37.11066 -35.63362 -34.75731 -32.05607 -31.58100 -29.46375 -27.85452 -25.52027 -24.50798 -23.22992 -22.83380 -21.89290 -20.00859 -19.03786 -18.63601 -17.80711 -17.51768 -16.94001 -16.77387 -16.38714 -16.18766 -15.85502 -15.38015 -15.21663 -14.71309 -14.36832 -14.05583 -13.62324 -13.42431 -13.39737 -13.19962 -13.00872 -12.86428 -12.68271 -12.55588 -12.52925 -12.27593 -12.17082 -11.79787 -11.74874 -11.39731 -11.28079 -11.07957 -11.04058 -10.86395 -10.21185 -9.27820 -8.32265 -6.44338 1.19499 1.39477 1.41814 1.53806 2.14866 2.34151 3.01780 3.20341 3.26221 3.65860 3.76968 3.95411 4.19705 4.22977 4.34125 4.41222 4.45849 4.52312 4.55634 4.61686 4.72883 4.74207 4.82690 4.84683 4.97789 5.05166 5.12764 5.14868 5.19576 5.24745 5.36716 5.41042 5.54764 5.59972 5.67990 5.96406 6.17678 6.43181 6.54479 6.82983 6.99437 7.27736 8.80006 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017084 B = 0.004213 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.612336 B = 6644.314297 C = 7722.791785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.212 3.788 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.077 3.923 13 N -0.683 5.683 14 C 0.088 3.912 15 H 0.050 0.950 16 C -0.105 4.105 17 C -0.107 4.107 18 C -0.098 4.098 19 C -0.074 4.074 20 H 0.110 0.890 21 C 0.486 3.514 22 O -0.553 6.553 23 O -0.511 6.511 24 C -0.099 4.099 25 H 0.271 0.729 26 H -0.016 1.016 27 H -0.014 1.014 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.029 0.971 31 H 0.106 0.894 32 H 0.341 0.659 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.425 0.575 40 H 0.052 0.948 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.771 -18.147 8.213 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.137 3.863 10 O -0.329 6.329 11 C -0.023 4.023 12 C -0.052 4.052 13 N -0.316 5.316 14 C -0.022 4.022 15 H 0.068 0.932 16 C -0.143 4.143 17 C -0.144 4.144 18 C -0.136 4.136 19 C -0.093 4.093 20 H 0.128 0.872 21 C 0.330 3.670 22 O -0.444 6.444 23 O -0.324 6.324 24 C -0.137 4.137 25 H 0.079 0.921 26 H 0.002 0.998 27 H 0.004 0.996 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.124 0.876 32 H 0.159 0.841 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.286 0.714 40 H 0.071 0.929 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.337 -18.487 8.215 21.880 hybrid contribution 0.949 1.689 -0.396 1.977 sum 9.285 -16.798 7.818 20.725 Atomic orbital electron populations 1.70070 1.07715 1.28599 1.50537 1.25921 0.95916 1.03269 0.93966 0.85221 0.78371 0.77258 0.78793 1.19345 1.19897 1.19017 1.21381 0.94025 0.90919 1.52152 0.92122 1.19769 0.88534 0.84600 0.93373 1.87752 1.35528 1.14434 1.95211 1.22614 0.96182 0.83802 0.99683 1.21932 0.94909 0.97642 0.90694 1.60598 1.27639 1.08433 1.34879 1.21581 0.90028 0.93186 0.97365 0.93234 1.21556 1.00626 0.94952 0.97119 1.21372 0.97448 1.01723 0.93870 1.21459 0.98780 0.93371 0.99954 1.21032 0.94622 1.01504 0.92150 0.87236 1.23921 0.89381 0.71910 0.81782 1.90695 1.25888 1.50420 1.77442 1.84523 1.46899 1.79509 1.21482 1.21549 0.97486 1.02063 0.92624 0.92061 0.99840 0.99626 0.93692 0.93659 0.95230 0.87632 0.84104 0.90537 0.91439 0.90565 0.91580 0.91040 0.90347 0.71384 0.92875 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 2 C 0.01 0.45 5.46 84.65 0.46 0.92 16 3 Si 0.98 44.61 29.54 68.60 2.03 46.64 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -32.65 9.43 25.60 0.24 -32.41 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.21 11.94 5.69 71.23 0.41 12.34 16 10 O -0.41 -19.58 9.85 -148.98 -1.47 -21.04 16 11 C 0.05 1.96 6.28 71.98 0.45 2.41 16 12 C 0.08 2.12 5.90 86.30 0.51 2.63 16 13 N -0.68 -17.97 4.82 -491.58 -2.37 -20.34 16 14 C 0.09 1.82 2.82 44.91 0.13 1.95 16 15 H 0.05 1.03 7.80 -2.38 -0.02 1.01 16 16 C -0.10 -1.70 5.53 30.59 0.17 -1.53 16 17 C -0.11 -1.74 5.77 30.60 0.18 -1.56 16 18 C -0.10 -1.61 5.14 30.60 0.16 -1.45 16 19 C -0.07 -1.56 2.47 -11.54 -0.03 -1.59 16 20 H 0.11 2.62 7.48 -2.39 -0.02 2.60 16 21 C 0.49 11.16 7.63 71.24 0.54 11.70 16 22 O -0.55 -16.09 16.74 21.97 0.37 -15.72 16 23 O -0.51 -9.04 13.33 -51.35 -0.68 -9.73 16 24 C -0.10 -2.16 3.87 30.59 0.12 -2.04 16 25 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 26 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 27 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 0.84 8.06 -2.39 -0.02 0.82 16 31 H 0.11 2.27 7.43 -2.39 -0.02 2.26 16 32 H 0.34 10.72 7.75 -89.70 -0.69 10.02 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.07 7.45 -2.39 -0.02 1.05 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.35 7.60 -2.39 -0.02 1.33 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.23 8.11 -2.38 -0.02 1.21 16 39 H 0.42 3.92 9.10 -74.06 -0.67 3.25 16 40 H 0.05 1.37 8.08 -2.39 -0.02 1.35 16 41 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 Total: -1.00 -70.18 334.96 1.14 -69.04 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -0.34 Total: 15.57 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 3.33 Total: -8.64 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -2.09 Total: -76.11 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -1.78 Total: -46.50 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -70.18 1.14 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395414266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.312 kcal (2) G-P(sol) polarization free energy of solvation -70.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds