Wall clock time and date at job start Mon Mar 30 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34947 * 126.04139 * 2 1 4 4 C 1.35315 * 107.74937 * 180.14554 * 3 2 1 5 5 C 1.39875 * 107.91755 * 359.61237 * 4 3 2 6 6 C 1.50696 * 125.89859 * 180.22308 * 5 4 3 7 7 N 1.46904 * 109.47650 * 94.99537 * 6 5 4 8 8 C 1.46900 * 110.99938 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.46669 * 180.02562 * 8 7 6 10 10 C 1.38630 * 119.75019 * 269.72855 * 9 8 7 11 11 C 1.37621 * 120.24834 * 179.72591 * 10 9 8 12 12 C 1.40712 * 119.74410 * 0.56427 * 11 10 9 13 13 C 1.41397 * 120.24749 * 179.68537 * 12 11 10 14 14 H 1.08001 * 120.00119 * 155.31287 * 13 12 11 15 15 C 1.39952 * 119.99664 * 335.31324 * 13 12 11 16 16 N 1.30817 * 119.99714 * 342.23082 * 15 13 12 17 17 Si 1.86800 * 119.99895 * 162.23200 * 15 13 12 18 18 H 1.48495 * 109.47167 * 94.66454 * 17 15 13 19 19 H 1.48494 * 109.47099 * 214.66491 * 17 15 13 20 20 H 1.48509 * 109.47167 * 334.66160 * 17 15 13 21 21 C 1.40719 * 119.51044 * 359.70700 * 12 11 10 22 22 C 1.37612 * 119.74838 * 0.02562 * 21 12 11 23 23 N 1.30830 * 108.20109 * 0.23582 * 5 4 3 24 24 H 1.09001 * 109.46878 * 270.26427 * 1 2 3 25 25 H 1.09004 * 109.47014 * 30.25855 * 1 2 3 26 26 H 1.09002 * 109.47223 * 150.25975 * 1 2 3 27 27 H 1.07996 * 126.12832 * 359.97438 * 3 2 1 28 28 H 1.07993 * 126.04343 * 179.87641 * 4 3 2 29 29 H 1.09006 * 109.47374 * 215.00092 * 6 5 4 30 30 H 1.08999 * 109.47161 * 334.99700 * 6 5 4 31 31 H 1.00897 * 110.99868 * 303.95703 * 7 6 5 32 32 H 1.08997 * 109.47129 * 299.99495 * 8 7 6 33 33 H 1.08998 * 109.47096 * 60.00609 * 8 7 6 34 34 H 1.08001 * 119.87417 * 359.97438 * 10 9 8 35 35 H 1.07999 * 120.13069 * 180.27974 * 11 10 9 36 36 H 0.97008 * 119.99579 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.12549 * 179.97438 * 21 12 11 38 38 H 1.07996 * 119.88084 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 3.5346 -0.7322 0.0037 6 6 4.7496 -1.6238 0.0077 7 7 5.0735 -2.0039 1.3893 8 6 6.2558 -2.8748 1.4322 9 6 6.5562 -3.2435 2.8621 10 6 7.4068 -2.4475 3.6137 11 6 7.6838 -2.7716 4.9222 12 6 7.1095 -3.9224 5.4930 13 6 7.3921 -4.2690 6.8344 14 1 6.6936 -4.8726 7.3949 15 6 8.5771 -3.8297 7.4358 16 7 9.5700 -3.4100 6.6948 17 14 8.7406 -3.8429 9.2966 18 1 9.3981 -5.1029 9.7268 19 1 9.5613 -2.6835 9.7295 20 1 7.3924 -3.7525 9.9127 21 6 6.2521 -4.7260 4.7189 22 6 5.9848 -4.3797 3.4142 23 7 2.2891 -1.1328 0.0057 24 1 -0.3633 0.0047 1.0277 25 1 -0.3633 0.8877 -0.5179 26 1 -0.3634 -0.8923 -0.5098 27 1 1.9283 2.1193 -0.0004 28 1 4.4211 1.2961 -0.0060 29 1 4.5443 -2.5204 -0.5773 30 1 5.5934 -1.0900 -0.4295 31 1 5.2048 -1.1876 1.9676 32 1 6.0613 -3.7800 0.8571 33 1 7.1098 -2.3492 1.0050 34 1 7.8505 -1.5676 3.1718 35 1 8.3432 -2.1476 5.5073 36 1 10.3912 -3.1052 7.1116 37 1 5.8062 -5.6117 5.1470 38 1 5.3274 -4.9952 2.8181 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398985037.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:55 Heat of formation + Delta-G solvation = 75.196553 kcal Electronic energy + Delta-G solvation = -19069.124227 eV Core-core repulsion = 16104.826934 eV Total energy + Delta-G solvation = -2964.297293 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.03112 -39.56441 -37.20170 -35.50802 -34.07438 -32.03630 -31.12435 -30.97618 -29.24421 -27.44752 -25.60304 -24.14395 -22.86097 -21.99432 -21.65100 -20.65942 -19.19800 -17.88429 -17.25405 -16.67851 -16.41867 -16.02376 -15.63112 -15.48142 -15.21001 -14.79342 -14.50042 -14.34471 -14.06184 -13.77374 -13.48681 -13.37260 -13.18390 -12.96893 -12.80583 -12.64484 -12.61055 -12.32878 -12.04843 -11.48944 -11.36967 -11.24551 -10.98286 -10.24781 -9.51918 -9.36064 -9.24305 -9.12977 -8.62511 -6.31464 0.91883 1.02998 1.18463 1.38077 1.48581 1.54477 1.73469 1.83598 2.21853 2.72411 3.52351 3.64179 3.85468 4.01137 4.19410 4.30193 4.36352 4.44292 4.46039 4.61842 4.64062 4.70133 4.71873 4.82535 4.86392 4.92695 5.06620 5.18006 5.18558 5.40136 5.50393 5.68923 5.73892 5.96777 6.12444 6.18898 6.22604 6.26798 6.42254 6.50039 6.72750 6.83537 6.96443 7.06681 8.34847 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.029434 B = 0.003090 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.057229 B = 9058.630107 C = 9275.811603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.385 5.385 3 C 0.060 3.940 4 C -0.290 4.290 5 C 0.063 3.937 6 C 0.141 3.859 7 N -0.688 5.688 8 C 0.133 3.867 9 C -0.200 4.200 10 C -0.096 4.096 11 C -0.190 4.190 12 C 0.079 3.921 13 C -0.504 4.504 14 H 0.071 0.929 15 C 0.035 3.965 16 N -0.826 5.826 17 Si 0.982 3.018 18 H -0.262 1.262 19 H -0.264 1.264 20 H -0.261 1.261 21 C -0.247 4.247 22 C -0.074 4.074 23 N -0.326 5.326 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.215 0.785 28 H 0.160 0.840 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.340 0.660 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.288 0.712 37 H 0.092 0.908 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.370 10.842 -12.259 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.168 5.168 3 C -0.086 4.086 4 C -0.319 4.319 5 C -0.103 4.103 6 C 0.011 3.989 7 N -0.321 5.321 8 C 0.005 3.995 9 C -0.201 4.201 10 C -0.114 4.114 11 C -0.209 4.209 12 C 0.077 3.923 13 C -0.534 4.534 14 H 0.090 0.910 15 C -0.179 4.179 16 N -0.452 5.452 17 Si 0.802 3.198 18 H -0.187 1.187 19 H -0.188 1.188 20 H -0.185 1.185 21 C -0.266 4.266 22 C -0.093 4.093 23 N -0.151 5.151 24 H 0.098 0.902 25 H 0.140 0.860 26 H 0.104 0.896 27 H 0.232 0.768 28 H 0.178 0.822 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.545 9.395 -12.276 19.908 hybrid contribution 1.436 1.037 0.825 1.954 sum -11.109 10.433 -11.451 19.063 Atomic orbital electron populations 1.22170 0.72227 1.05957 1.04303 1.48941 1.07974 1.03555 1.56302 1.23164 0.90555 0.94780 1.00127 1.21743 0.98606 0.93822 1.17739 1.22387 0.93153 0.94761 0.99998 1.20211 0.91329 0.96787 0.90569 1.60482 1.39589 1.22519 1.09469 1.20472 0.90035 0.96424 0.92544 1.19329 1.04807 0.99144 0.96858 1.20797 0.97944 0.98603 0.94088 1.21249 1.05199 0.98583 0.95873 1.17974 0.90454 0.90579 0.93325 1.19821 1.04801 1.31093 0.97649 0.91036 1.26748 0.93995 0.91801 1.05383 1.69879 1.03722 1.31967 1.39596 0.85211 0.79307 0.79116 0.76160 1.18684 1.18826 1.18465 1.21168 1.08382 1.01548 0.95531 1.20648 0.97775 0.96540 0.94323 1.77290 1.02408 1.09713 1.25643 0.90235 0.86007 0.89621 0.76824 0.82217 0.90304 0.91584 0.84223 0.90919 0.94279 0.87387 0.88197 0.90151 0.88993 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 11.47 127.77 1.47 2.59 16 2 N -0.39 -8.41 4.01 -369.57 -1.48 -9.90 16 3 C 0.06 1.08 11.49 83.54 0.96 2.04 16 4 C -0.29 -6.48 10.74 21.99 0.24 -6.24 16 5 C 0.06 1.77 6.73 43.10 0.29 2.06 16 6 C 0.14 3.81 6.24 85.56 0.53 4.34 16 7 N -0.69 -22.33 6.48 -521.98 -3.38 -25.72 16 8 C 0.13 4.52 5.80 85.56 0.50 5.01 16 9 C -0.20 -8.65 5.41 -19.67 -0.11 -8.76 16 10 C -0.10 -4.46 9.67 22.22 0.21 -4.24 16 11 C -0.19 -10.26 8.70 22.73 0.20 -10.06 16 12 C 0.08 4.47 5.57 -21.29 -0.12 4.35 16 13 C -0.50 -28.40 9.05 23.46 0.21 -28.19 16 14 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 15 C 0.04 1.84 5.14 85.26 0.44 2.28 16 16 N -0.83 -44.23 10.97 21.83 0.24 -43.99 16 17 Si 0.98 39.29 29.59 68.60 2.03 41.32 16 18 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 C -0.25 -12.88 9.80 22.73 0.22 -12.65 16 22 C -0.07 -3.45 9.67 22.22 0.21 -3.23 16 23 N -0.33 -9.90 12.57 -47.39 -0.60 -10.50 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.22 1.71 8.06 -2.91 -0.02 1.69 16 28 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.34 11.24 8.71 -89.70 -0.78 10.45 16 32 H 0.07 2.35 8.08 -2.39 -0.02 2.33 16 33 H 0.04 1.21 8.08 -2.39 -0.02 1.19 16 34 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.10 5.63 6.18 -2.91 -0.02 5.62 16 36 H 0.29 13.86 8.30 -92.70 -0.77 13.09 16 37 H 0.09 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -69.46 328.68 2.34 -67.11 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.28 Total: 32.39 kcal Atomic # 6 Polarization: -55.98 SS G_CDS: 5.26 Total: -50.72 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -5.22 Total: -90.11 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -69.46 2.34 -67.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398985037.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.312 kcal (2) G-P(sol) polarization free energy of solvation -69.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds