Wall clock time and date at job start Mon Mar 30 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48499 * 109.47197 * 269.99974 * 3 2 1 5 5 H 1.48506 * 109.47141 * 30.00182 * 3 2 1 6 6 H 1.48498 * 109.46874 * 150.00159 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00166 * 197.84598 * 7 2 1 9 9 C 1.41403 * 120.00028 * 17.84369 * 7 2 1 10 10 C 1.40714 * 120.24063 * 204.38644 * 9 7 2 11 11 C 1.37620 * 119.73878 * 180.02562 * 10 9 7 12 12 C 1.38627 * 120.25185 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75330 * 179.97438 * 12 11 10 14 14 N 1.46498 * 109.47107 * 89.99735 * 13 12 11 15 15 C 1.35044 * 126.39654 * 90.03150 * 14 13 12 16 16 N 1.30499 * 108.69857 * 180.02562 * 15 14 13 17 17 C 1.34131 * 109.25875 * 359.97438 * 16 15 14 18 18 C 1.50698 * 125.99309 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.47009 * 304.97568 * 18 17 16 20 20 N 1.46895 * 109.47139 * 179.97438 * 19 18 17 21 21 C 1.34672 * 108.01793 * 359.73123 * 17 16 15 22 22 C 1.38640 * 120.50285 * 0.25050 * 12 11 10 23 23 C 1.37617 * 120.24348 * 359.44930 * 22 12 11 24 24 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 25 25 H 1.07993 * 120.13177 * 0.04169 * 10 9 7 26 26 H 1.08006 * 119.87289 * 180.02562 * 11 10 9 27 27 H 1.08997 * 109.47017 * 210.00019 * 13 12 11 28 28 H 1.08998 * 109.46985 * 329.99783 * 13 12 11 29 29 H 1.07993 * 125.64933 * 359.95982 * 15 14 13 30 30 H 1.09003 * 109.47381 * 64.97244 * 18 17 16 31 31 H 1.08996 * 109.47139 * 184.97589 * 18 17 16 32 32 H 1.09003 * 109.46785 * 300.00042 * 19 18 17 33 33 H 1.09004 * 109.46846 * 60.00008 * 19 18 17 34 34 H 1.00901 * 111.00236 * 56.04027 * 20 19 18 35 35 H 1.00897 * 111.00346 * 180.02562 * 20 19 18 36 36 H 1.07997 * 126.59290 * 180.27596 * 21 17 16 37 37 H 1.07995 * 119.87855 * 179.70679 * 22 12 11 38 38 H 1.08008 * 120.12837 * 180.27402 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3520 -2.4069 -0.3763 10 6 1.8259 -3.6498 0.0825 11 6 1.1799 -4.8065 -0.2901 12 6 0.0668 -4.7502 -1.1144 13 6 -0.6317 -6.0238 -1.5159 14 7 -1.6747 -6.3384 -0.5364 15 6 -2.9627 -5.9350 -0.5800 16 7 -3.5859 -6.4115 0.4629 17 6 -2.7268 -7.1293 1.2018 18 6 -3.0493 -7.8474 2.4869 19 6 -3.6583 -6.8595 3.4841 20 7 -3.9732 -7.5595 4.7365 21 6 -1.5272 -7.1013 0.5905 22 6 -0.4055 -3.5316 -1.5770 23 6 0.2210 -2.3618 -1.2123 24 1 -0.4851 0.8400 0.0004 25 1 2.6929 -3.6960 0.7246 26 1 1.5415 -5.7617 0.0612 27 1 -1.0835 -5.8959 -2.4995 28 1 0.0911 -6.8389 -1.5514 29 1 -3.4037 -5.3192 -1.3497 30 1 -3.7619 -8.6476 2.2871 31 1 -2.1362 -8.2702 2.9059 32 1 -2.9457 -6.0593 3.6839 33 1 -4.5714 -6.4367 3.0651 34 1 -3.1549 -8.0154 5.1116 35 1 -4.3773 -6.9282 5.4119 36 1 -0.6220 -7.5852 0.9264 37 1 -1.2706 -3.4999 -2.2226 38 1 -0.1511 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399049709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:01 Heat of formation + Delta-G solvation = 63.778631 kcal Electronic energy + Delta-G solvation = -19598.161258 eV Core-core repulsion = 16633.368846 eV Total energy + Delta-G solvation = -2964.792411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.62991 -37.81557 -35.61377 -34.42467 -33.11362 -30.65151 -30.15848 -29.43587 -27.70411 -26.37981 -23.99589 -22.38300 -21.24022 -20.93111 -20.06060 -19.47927 -17.47721 -16.72723 -15.78989 -15.56450 -15.23596 -14.78856 -14.37820 -14.10799 -13.92556 -13.65977 -13.42861 -13.02707 -12.69671 -12.19364 -12.10535 -11.98598 -11.85604 -11.67082 -11.21198 -11.14988 -11.06805 -10.83759 -10.58836 -9.93320 -9.60529 -9.51487 -9.31410 -8.99385 -8.69991 -7.94355 -7.66439 -7.54606 -6.93555 -4.54312 2.38159 2.60153 2.89706 2.96898 2.99993 3.01122 3.49149 3.52708 3.80169 4.45874 4.59800 4.94695 5.10569 5.25182 5.35598 5.46448 5.49190 5.59892 5.67868 5.80350 5.82740 6.01533 6.11414 6.15876 6.25047 6.34487 6.71549 6.77787 6.90461 7.06944 7.09722 7.14170 7.18034 7.41458 7.41598 7.62357 7.67807 7.86847 7.88230 8.10725 8.45512 8.50916 8.70912 8.77980 10.00318 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.004146 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.325182 B = 6751.354059 C = 7381.778465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.229 4.229 11 C -0.066 4.066 12 C -0.254 4.254 13 C 0.166 3.834 14 N -0.439 5.439 15 C 0.184 3.816 16 N -0.498 5.498 17 C -0.013 4.013 18 C -0.023 4.023 19 C 0.068 3.932 20 N -0.854 5.854 21 C -0.047 4.047 22 C -0.079 4.079 23 C -0.168 4.168 24 H 0.284 0.716 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.197 0.803 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.079 0.921 34 H 0.336 0.664 35 H 0.340 0.660 36 H 0.164 0.836 37 H 0.087 0.913 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 -8.521 0.814 8.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.249 4.249 11 C -0.085 4.085 12 C -0.256 4.256 13 C 0.046 3.954 14 N -0.119 5.119 15 C -0.099 4.099 16 N -0.217 5.217 17 C -0.143 4.143 18 C -0.062 4.062 19 C -0.063 4.063 20 N -0.383 5.383 21 C -0.182 4.182 22 C -0.098 4.098 23 C -0.187 4.187 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.213 0.787 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.181 0.819 37 H 0.105 0.895 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.461 -8.629 0.427 9.308 hybrid contribution 1.977 1.510 0.255 2.501 sum -1.484 -7.119 0.682 7.304 Atomic orbital electron populations 1.69817 1.07701 1.29644 1.33680 1.25973 0.94759 1.01586 0.92077 0.86264 0.80512 0.80255 0.79489 1.19084 1.20133 1.18478 1.19700 0.98274 0.91292 1.39321 0.90161 1.17674 0.90815 0.92058 0.87913 1.20949 1.04048 0.92797 1.07112 1.20320 0.95120 0.96464 0.96631 1.18972 1.02216 0.92589 1.11800 1.20565 0.88160 0.96918 0.89778 1.45973 1.10279 1.36200 1.19475 1.24745 0.81578 1.03399 1.00142 1.70060 1.32985 1.13985 1.04712 1.20400 0.90558 1.04375 0.98987 1.19666 1.00302 0.96666 0.89575 1.21715 1.00286 0.94762 0.89531 1.58775 1.35332 1.36539 1.07670 1.22338 1.00455 1.03869 0.91574 1.20487 0.97830 0.92586 0.98944 1.21298 0.99538 0.96724 1.01152 0.90543 0.88864 0.89636 0.89764 0.90105 0.78673 0.90674 0.91591 0.95571 0.90260 0.85230 0.84841 0.81911 0.89476 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.69 10.95 55.55 0.61 -19.08 16 2 C 0.08 1.82 5.14 -17.35 -0.09 1.74 16 3 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.70 9.05 -37.74 -0.34 -12.04 16 8 H 0.08 1.97 7.91 -52.48 -0.42 1.56 16 9 C 0.12 3.03 5.57 -106.82 -0.60 2.44 16 10 C -0.23 -5.40 9.80 -38.87 -0.38 -5.78 16 11 C -0.07 -1.39 9.67 -39.66 -0.38 -1.78 16 12 C -0.25 -5.05 5.49 -104.33 -0.57 -5.62 16 13 C 0.17 2.59 6.27 -5.19 -0.03 2.55 16 14 N -0.44 -7.26 2.73 -119.87 -0.33 -7.59 16 15 C 0.18 3.12 12.56 -90.37 -1.14 1.98 16 16 N -0.50 -9.06 11.23 -10.87 -0.12 -9.18 16 17 C -0.01 -0.21 6.36 -82.85 -0.53 -0.74 16 18 C -0.02 -0.32 6.04 -27.88 -0.17 -0.49 16 19 C 0.07 0.93 6.75 -3.82 -0.03 0.90 16 20 N -0.85 -9.48 9.62 -10.37 -0.10 -9.58 16 21 C -0.05 -0.76 11.46 -16.56 -0.19 -0.95 16 22 C -0.08 -1.72 9.67 -39.66 -0.38 -2.11 16 23 C -0.17 -4.16 8.70 -38.87 -0.34 -4.50 16 24 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 25 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 26 H 0.09 1.56 8.06 -52.48 -0.42 1.14 16 27 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 29 H 0.20 2.77 8.06 -52.49 -0.42 2.35 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.34 3.16 8.99 -39.29 -0.35 2.81 16 35 H 0.34 3.26 9.08 -39.29 -0.36 2.90 16 36 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.12 3.06 6.16 -52.48 -0.32 2.74 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -28.49 327.40 -10.43 -38.91 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -5.23 Total: 13.05 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -5.16 Total: -24.40 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.06 Total: -45.43 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.49 -10.43 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399049709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.693 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds