Wall clock time and date at job start Mon Mar 30 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48499 * 109.47197 * 269.99974 * 3 2 1 5 5 H 1.48506 * 109.47141 * 30.00182 * 3 2 1 6 6 H 1.48498 * 109.46874 * 150.00159 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00166 * 197.84598 * 7 2 1 9 9 C 1.41403 * 120.00028 * 17.84369 * 7 2 1 10 10 C 1.40714 * 120.24063 * 204.38644 * 9 7 2 11 11 C 1.37620 * 119.73878 * 180.02562 * 10 9 7 12 12 C 1.38627 * 120.25185 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75330 * 179.97438 * 12 11 10 14 14 N 1.46498 * 109.47107 * 89.99735 * 13 12 11 15 15 C 1.35044 * 126.39654 * 90.03150 * 14 13 12 16 16 N 1.30499 * 108.69857 * 180.02562 * 15 14 13 17 17 C 1.34131 * 109.25875 * 359.97438 * 16 15 14 18 18 C 1.50698 * 125.99309 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.47009 * 304.97568 * 18 17 16 20 20 N 1.46895 * 109.47139 * 179.97438 * 19 18 17 21 21 C 1.34672 * 108.01793 * 359.73123 * 17 16 15 22 22 C 1.38640 * 120.50285 * 0.25050 * 12 11 10 23 23 C 1.37617 * 120.24348 * 359.44930 * 22 12 11 24 24 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 25 25 H 1.07993 * 120.13177 * 0.04169 * 10 9 7 26 26 H 1.08006 * 119.87289 * 180.02562 * 11 10 9 27 27 H 1.08997 * 109.47017 * 210.00019 * 13 12 11 28 28 H 1.08998 * 109.46985 * 329.99783 * 13 12 11 29 29 H 1.07993 * 125.64933 * 359.95982 * 15 14 13 30 30 H 1.09003 * 109.47381 * 64.97244 * 18 17 16 31 31 H 1.08996 * 109.47139 * 184.97589 * 18 17 16 32 32 H 1.09003 * 109.46785 * 300.00042 * 19 18 17 33 33 H 1.09004 * 109.46846 * 60.00008 * 19 18 17 34 34 H 1.00901 * 111.00236 * 56.04027 * 20 19 18 35 35 H 1.00897 * 111.00346 * 180.02562 * 20 19 18 36 36 H 1.07997 * 126.59290 * 180.27596 * 21 17 16 37 37 H 1.07995 * 119.87855 * 179.70679 * 22 12 11 38 38 H 1.08008 * 120.12837 * 180.27402 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3520 -2.4069 -0.3763 10 6 1.8259 -3.6498 0.0825 11 6 1.1799 -4.8065 -0.2901 12 6 0.0668 -4.7502 -1.1144 13 6 -0.6317 -6.0238 -1.5159 14 7 -1.6747 -6.3384 -0.5364 15 6 -2.9627 -5.9350 -0.5800 16 7 -3.5859 -6.4115 0.4629 17 6 -2.7268 -7.1293 1.2018 18 6 -3.0493 -7.8474 2.4869 19 6 -3.6583 -6.8595 3.4841 20 7 -3.9732 -7.5595 4.7365 21 6 -1.5272 -7.1013 0.5905 22 6 -0.4055 -3.5316 -1.5770 23 6 0.2210 -2.3618 -1.2123 24 1 -0.4851 0.8400 0.0004 25 1 2.6929 -3.6960 0.7246 26 1 1.5415 -5.7617 0.0612 27 1 -1.0835 -5.8959 -2.4995 28 1 0.0911 -6.8389 -1.5514 29 1 -3.4037 -5.3192 -1.3497 30 1 -3.7619 -8.6476 2.2871 31 1 -2.1362 -8.2702 2.9059 32 1 -2.9457 -6.0593 3.6839 33 1 -4.5714 -6.4367 3.0651 34 1 -3.1549 -8.0154 5.1116 35 1 -4.3773 -6.9282 5.4119 36 1 -0.6220 -7.5852 0.9264 37 1 -1.2706 -3.4999 -2.2226 38 1 -0.1511 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399049709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:00 Heat of formation + Delta-G solvation = 48.588717 kcal Electronic energy + Delta-G solvation = -19598.819942 eV Core-core repulsion = 16633.368846 eV Total energy + Delta-G solvation = -2965.451096 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.88288 -39.52570 -36.75772 -35.97383 -34.59470 -32.01721 -31.58966 -31.16098 -29.08963 -27.76327 -25.57371 -23.53280 -22.94502 -22.39987 -21.53594 -20.72575 -19.29042 -17.97086 -17.27340 -16.84567 -16.63545 -15.92833 -15.80856 -15.58967 -15.33179 -15.16016 -14.70745 -14.33277 -14.16686 -13.88287 -13.59623 -13.33882 -13.16461 -13.01092 -12.75614 -12.74604 -12.50905 -12.20319 -12.11029 -11.62962 -11.34267 -11.09130 -10.79296 -10.34274 -9.65627 -9.44657 -9.33031 -9.16894 -8.71486 -6.42527 0.77566 1.09369 1.27061 1.34956 1.45752 1.48115 2.15223 2.19189 2.23030 2.72070 3.60394 3.68428 3.82909 3.96352 4.11932 4.19945 4.23488 4.38137 4.43809 4.47260 4.51139 4.63815 4.71282 4.86437 4.98432 5.08269 5.16190 5.22031 5.27216 5.37770 5.51795 5.64031 5.87113 5.92593 6.03679 6.12901 6.18744 6.31984 6.43099 6.61532 6.63595 6.87006 6.96046 7.25598 8.24950 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.004146 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.325182 B = 6751.354059 C = 7381.778465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.085 3.915 10 C -0.249 4.249 11 C -0.069 4.069 12 C -0.235 4.235 13 C 0.170 3.830 14 N -0.443 5.443 15 C 0.172 3.828 16 N -0.528 5.528 17 C -0.030 4.030 18 C -0.019 4.019 19 C 0.077 3.923 20 N -0.852 5.852 21 C -0.053 4.053 22 C -0.084 4.084 23 C -0.195 4.195 24 H 0.289 0.711 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.216 0.784 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.010 0.990 33 H 0.057 0.943 34 H 0.348 0.652 35 H 0.349 0.651 36 H 0.189 0.811 37 H 0.111 0.889 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 -10.192 0.662 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.082 3.918 10 C -0.268 4.268 11 C -0.087 4.087 12 C -0.237 4.237 13 C 0.050 3.950 14 N -0.123 5.123 15 C -0.111 4.111 16 N -0.248 5.248 17 C -0.159 4.159 18 C -0.058 4.058 19 C -0.055 4.055 20 N -0.382 5.382 21 C -0.187 4.187 22 C -0.102 4.102 23 C -0.215 4.215 24 H 0.100 0.900 25 H 0.113 0.887 26 H 0.138 0.862 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.232 0.768 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.206 0.794 37 H 0.129 0.871 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.242 -10.326 0.288 10.827 hybrid contribution 1.819 1.820 0.302 2.591 sum -1.423 -8.507 0.591 8.645 Atomic orbital electron populations 1.69873 1.09090 1.30720 1.35047 1.26776 0.95450 1.04621 0.91098 0.85202 0.79078 0.75800 0.79667 1.18452 1.19293 1.18151 1.19925 0.98452 0.92695 1.41796 0.90606 1.18019 0.91763 0.93110 0.88879 1.21169 1.04694 0.93291 1.07688 1.20709 0.94958 0.96958 0.96092 1.19438 1.01167 0.93935 1.09179 1.20660 0.88510 0.95336 0.90478 1.45931 1.10166 1.36364 1.19804 1.25231 0.81961 1.03471 1.00398 1.70058 1.34179 1.14937 1.05612 1.20890 0.90788 1.04432 0.99817 1.19707 1.01340 0.96219 0.88532 1.21507 0.98745 0.94571 0.90657 1.58720 1.35943 1.36385 1.07195 1.22816 1.01207 1.03550 0.91169 1.20817 0.98151 0.92390 0.98885 1.21281 1.00468 0.97250 1.02476 0.90032 0.88699 0.86248 0.87174 0.87199 0.76764 0.90698 0.89316 0.97135 0.92458 0.83840 0.83842 0.79373 0.87066 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.83 10.95 21.82 0.24 -42.59 16 2 C 0.04 1.80 5.14 85.26 0.44 2.24 16 3 Si 0.98 37.67 29.60 68.60 2.03 39.70 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 7 C -0.50 -26.67 9.05 23.46 0.21 -26.45 16 8 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 9 C 0.08 4.48 5.57 -21.29 -0.12 4.36 16 10 C -0.25 -11.76 9.80 22.73 0.22 -11.54 16 11 C -0.07 -2.72 9.67 22.22 0.21 -2.51 16 12 C -0.24 -8.73 5.49 -19.68 -0.11 -8.84 16 13 C 0.17 4.57 6.27 85.63 0.54 5.11 16 14 N -0.44 -13.17 2.73 -533.16 -1.46 -14.63 16 15 C 0.17 5.46 12.56 180.26 2.26 7.72 16 16 N -0.53 -18.53 11.23 -188.32 -2.12 -20.65 16 17 C -0.03 -0.93 6.36 41.39 0.26 -0.67 16 18 C -0.02 -0.49 6.04 29.85 0.18 -0.31 16 19 C 0.08 2.02 6.75 86.31 0.58 2.60 16 20 N -0.85 -17.54 9.62 -186.71 -1.80 -19.34 16 21 C -0.05 -1.54 11.46 83.09 0.95 -0.59 16 22 C -0.08 -3.54 9.67 22.22 0.21 -3.33 16 23 C -0.20 -9.93 8.70 22.73 0.20 -9.73 16 24 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 25 H 0.09 4.29 8.06 -2.91 -0.02 4.27 16 26 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 27 H 0.11 2.46 8.08 -2.39 -0.02 2.44 16 28 H 0.11 2.40 8.08 -2.39 -0.02 2.38 16 29 H 0.22 5.61 8.06 -2.91 -0.02 5.58 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.09 1.82 8.11 -2.39 -0.02 1.81 16 32 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.35 5.79 8.99 -89.69 -0.81 4.99 16 35 H 0.35 6.21 9.08 -89.70 -0.81 5.40 16 36 H 0.19 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.10 5.33 6.16 -2.91 -0.02 5.31 16 Total: -1.00 -63.71 327.40 2.41 -61.30 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.54 Total: 38.12 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 6.05 Total: -41.93 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -5.13 Total: -97.20 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -63.71 2.41 -61.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399049709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.893 kcal (2) G-P(sol) polarization free energy of solvation -63.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds