Wall clock time and date at job start Mon Mar 30 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48498 * 109.47075 * 239.99934 * 3 2 1 5 5 H 1.48499 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47231 * 120.00040 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00166 * 197.84598 * 7 2 1 9 9 C 1.41398 * 120.00283 * 17.84078 * 7 2 1 10 10 C 1.40709 * 120.24734 * 204.38574 * 9 7 2 11 11 C 1.37616 * 119.74556 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24801 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.74768 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.46869 * 90.00701 * 13 12 11 15 15 C 1.46902 * 110.99513 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.46761 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47076 * 180.02562 * 16 15 14 18 18 C 1.34947 * 126.03794 * 125.00448 * 17 16 15 19 19 C 1.35321 * 107.74815 * 179.97438 * 18 17 16 20 20 C 1.39866 * 107.91800 * 0.02562 * 19 18 17 21 21 N 1.30836 * 108.20537 * 359.73774 * 20 19 18 22 22 C 1.38632 * 120.49849 * 0.25906 * 12 11 10 23 23 C 1.37622 * 120.25039 * 359.43619 * 22 12 11 24 24 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.12670 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.87962 * 180.02562 * 11 10 9 27 27 H 1.09007 * 109.46706 * 210.00371 * 13 12 11 28 28 H 1.08998 * 109.47115 * 329.99916 * 13 12 11 29 29 H 1.00897 * 111.00041 * 303.94896 * 14 13 12 30 30 H 1.08993 * 109.47455 * 299.99699 * 15 14 13 31 31 H 1.09005 * 109.46941 * 60.00236 * 15 14 13 32 32 H 1.09005 * 109.47589 * 300.00034 * 16 15 14 33 33 H 1.09002 * 109.47013 * 60.00112 * 16 15 14 34 34 H 1.08000 * 126.12650 * 359.95618 * 18 17 16 35 35 H 1.07994 * 126.03841 * 179.97438 * 19 18 17 36 36 H 1.08006 * 125.89902 * 180.02562 * 20 19 18 37 37 H 1.08005 * 119.87394 * 179.69991 * 22 12 11 38 38 H 1.07996 * 120.12662 * 180.27958 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3521 -2.4069 -0.3762 10 6 1.8259 -3.6498 0.0825 11 6 1.1799 -4.8065 -0.2900 12 6 0.0667 -4.7502 -1.1144 13 6 -0.6317 -6.0239 -1.5157 14 7 -1.6776 -6.3392 -0.5336 15 6 -2.3817 -7.5772 -0.8936 16 6 -3.4605 -7.8724 0.1504 17 7 -4.1623 -9.1073 -0.2082 18 6 -4.3146 -10.1916 0.5806 19 6 -5.0193 -11.1129 -0.1163 20 6 -5.3070 -10.5734 -1.3742 21 7 -4.7983 -9.3692 -1.4286 22 6 -0.4053 -3.5316 -1.5770 23 6 0.2211 -2.3618 -1.2123 24 1 -0.4851 0.8400 0.0004 25 1 2.6931 -3.6960 0.7244 26 1 1.5415 -5.7616 0.0612 27 1 -1.0836 -5.8960 -2.4994 28 1 0.0912 -6.8390 -1.5512 29 1 -1.2933 -6.3991 0.3973 30 1 -2.8458 -7.4597 -1.8728 31 1 -1.6712 -8.4033 -0.9249 32 1 -2.9961 -7.9900 1.1296 33 1 -4.1710 -7.0463 0.1822 34 1 -3.9407 -10.3041 1.5876 35 1 -5.3078 -12.0921 0.2362 36 1 -5.8582 -11.0641 -2.1628 37 1 -1.2706 -3.4999 -2.2227 38 1 -0.1510 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399100258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:42 Heat of formation + Delta-G solvation = 75.880494 kcal Electronic energy + Delta-G solvation = -18921.015790 eV Core-core repulsion = 15956.748154 eV Total energy + Delta-G solvation = -2964.267635 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.98657 -39.61491 -37.55240 -35.64545 -34.16901 -32.04000 -31.15756 -30.95153 -29.34857 -27.38384 -24.88004 -23.62886 -22.83292 -21.94172 -21.75098 -21.31295 -19.21118 -18.12521 -17.35700 -17.17255 -16.15742 -15.89358 -15.66245 -15.55135 -15.30530 -15.01228 -14.59029 -14.31085 -13.96091 -13.81126 -13.64036 -13.53858 -13.35311 -12.94765 -12.72874 -12.61962 -12.45881 -12.20620 -12.07604 -11.51392 -11.43856 -11.23092 -11.00005 -10.38917 -9.50447 -9.46830 -9.34125 -9.16765 -8.62997 -6.32949 0.93943 1.03040 1.16323 1.37679 1.48386 1.51678 1.62594 1.99232 2.20582 2.69737 3.31088 3.63868 3.81140 3.97596 4.09802 4.15744 4.28977 4.30572 4.34347 4.54696 4.60147 4.62878 4.78787 4.81097 4.89546 4.95182 5.07874 5.16455 5.18295 5.39330 5.47186 5.72081 5.76879 5.91010 6.03063 6.11835 6.16280 6.26807 6.39868 6.46744 6.72112 6.81268 6.95067 7.05308 8.33501 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.047676 B = 0.002689 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.161085 B =10411.425819 C =10577.704272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.502 4.502 8 H 0.075 0.925 9 C 0.079 3.921 10 C -0.243 4.243 11 C -0.081 4.081 12 C -0.202 4.202 13 C 0.135 3.865 14 N -0.689 5.689 15 C 0.062 3.938 16 C 0.138 3.862 17 N -0.380 5.380 18 C 0.052 3.948 19 C -0.287 4.287 20 C 0.033 3.967 21 N -0.344 5.344 22 C -0.086 4.086 23 C -0.193 4.193 24 H 0.288 0.712 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.347 0.653 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.206 0.794 35 H 0.170 0.830 36 H 0.203 0.797 37 H 0.098 0.902 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 -16.493 1.873 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.093 0.907 9 C 0.077 3.923 10 C -0.263 4.263 11 C -0.100 4.100 12 C -0.203 4.203 13 C 0.007 3.993 14 N -0.321 5.321 15 C -0.068 4.068 16 C 0.016 3.984 17 N -0.163 5.163 18 C -0.094 4.094 19 C -0.316 4.316 20 C -0.152 4.152 21 N -0.166 5.166 22 C -0.105 4.105 23 C -0.213 4.213 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.136 0.864 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.166 0.834 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.223 0.777 35 H 0.187 0.813 36 H 0.220 0.780 37 H 0.117 0.883 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.246 -14.763 0.919 16.471 hybrid contribution 0.789 -0.336 0.649 1.075 sum -6.457 -15.099 1.568 16.497 Atomic orbital electron populations 1.69881 1.09031 1.30561 1.35604 1.26770 0.95481 1.04562 0.91275 0.85265 0.78788 0.75670 0.80061 1.18570 1.19245 1.18251 1.19825 0.98356 0.92637 1.42347 0.90666 1.17977 0.91883 0.93208 0.89232 1.21157 1.04478 0.93153 1.07481 1.20684 0.95285 0.96894 0.97130 1.19265 0.99941 0.93892 1.07246 1.20421 0.90945 0.93117 0.94844 1.60406 1.31308 1.34030 1.06358 1.21981 0.95182 0.90597 0.99075 1.21680 0.94112 0.83320 0.99268 1.48840 1.42436 1.14087 1.10949 1.23269 0.99974 0.86980 0.99197 1.21889 1.10672 1.03537 0.95476 1.24440 0.99351 0.92072 0.99374 1.77344 1.16235 1.19251 1.03761 1.20729 0.97918 0.92664 0.99177 1.21273 1.00499 0.97000 1.02489 0.90191 0.88487 0.86412 0.91775 0.94428 0.83447 0.91784 0.94919 0.85794 0.89702 0.77691 0.81255 0.78008 0.88348 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.06 10.95 21.82 0.24 -43.82 16 2 C 0.03 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 38.67 29.60 68.60 2.03 40.70 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 7 C -0.50 -27.49 9.05 23.46 0.21 -27.27 16 8 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.08 4.34 5.57 -21.29 -0.12 4.22 16 10 C -0.24 -11.85 9.80 22.73 0.22 -11.63 16 11 C -0.08 -3.41 9.67 22.22 0.21 -3.20 16 12 C -0.20 -8.33 5.41 -19.67 -0.11 -8.44 16 13 C 0.13 4.39 5.80 85.56 0.50 4.89 16 14 N -0.69 -19.77 6.49 -517.92 -3.36 -23.13 16 15 C 0.06 1.50 5.88 86.30 0.51 2.01 16 16 C 0.14 2.78 6.77 86.38 0.58 3.36 16 17 N -0.38 -8.35 3.68 -348.05 -1.28 -9.63 16 18 C 0.05 0.85 11.45 83.54 0.96 1.80 16 19 C -0.29 -4.66 10.80 21.99 0.24 -4.43 16 20 C 0.03 0.65 12.02 85.24 1.02 1.68 16 21 N -0.34 -8.95 12.42 -57.02 -0.71 -9.66 16 22 C -0.09 -4.05 9.67 22.22 0.21 -3.83 16 23 C -0.19 -10.39 8.70 22.73 0.20 -10.19 16 24 H 0.29 13.92 8.30 -92.71 -0.77 13.16 16 25 H 0.10 4.47 8.06 -2.91 -0.02 4.44 16 26 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 27 H 0.06 2.11 8.08 -2.38 -0.02 2.09 16 28 H 0.04 1.11 8.08 -2.39 -0.02 1.09 16 29 H 0.35 9.25 8.72 -89.70 -0.78 8.47 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 31 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.12 1.73 8.07 -2.38 -0.02 1.71 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.21 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.20 2.70 8.06 -2.91 -0.02 2.67 16 37 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 Total: -1.00 -65.15 328.28 2.27 -62.87 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.27 Total: 31.51 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 5.08 Total: -48.85 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -5.11 Total: -86.24 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -65.15 2.27 -62.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399100258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.752 kcal (2) G-P(sol) polarization free energy of solvation -65.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds