Wall clock time and date at job start Mon Mar 30 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46821 * 270.00284 * 3 2 1 5 5 H 1.48501 * 109.47257 * 29.99856 * 3 2 1 6 6 H 1.48498 * 109.47318 * 150.00210 * 3 2 1 7 7 C 1.39941 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99869 * 197.84807 * 7 2 1 9 9 C 1.41399 * 120.00319 * 17.84028 * 7 2 1 10 10 C 1.40712 * 120.24577 * 204.38609 * 9 7 2 11 11 C 1.37615 * 119.74605 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24435 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.74557 * 179.97438 * 12 11 10 14 14 N 1.46903 * 109.46960 * 90.00399 * 13 12 11 15 15 C 1.46896 * 110.99947 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47268 * 180.02562 * 15 14 13 17 17 N 1.46501 * 109.47195 * 179.97438 * 16 15 14 18 18 C 1.36885 * 126.39342 * 89.99987 * 17 16 15 19 19 C 1.34671 * 106.81545 * 179.97438 * 18 17 16 20 20 N 1.34130 * 108.01905 * 359.97438 * 19 18 17 21 21 C 1.30495 * 109.25813 * 359.72986 * 20 19 18 22 22 C 1.38631 * 120.50645 * 0.26133 * 12 11 10 23 23 C 1.37622 * 120.24099 * 359.44149 * 22 12 11 24 24 H 0.96994 * 119.99970 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.12698 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.87918 * 180.02562 * 11 10 9 27 27 H 1.09001 * 109.47229 * 210.00062 * 13 12 11 28 28 H 1.08996 * 109.47414 * 330.00379 * 13 12 11 29 29 H 1.00898 * 111.00038 * 303.95605 * 14 13 12 30 30 H 1.09009 * 109.47392 * 300.00012 * 15 14 13 31 31 H 1.08993 * 109.47392 * 60.00090 * 15 14 13 32 32 H 1.08995 * 109.46704 * 300.00326 * 16 15 14 33 33 H 1.09001 * 109.46794 * 60.00013 * 16 15 14 34 34 H 1.08001 * 126.59271 * 359.97080 * 18 17 16 35 35 H 1.07994 * 125.99025 * 180.02562 * 19 18 17 36 36 H 1.08007 * 125.65311 * 180.29061 * 21 20 19 37 37 H 1.07998 * 119.87837 * 179.69772 * 22 12 11 38 38 H 1.08002 * 120.12182 * 180.28267 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0825 11 6 1.1798 -4.8065 -0.2899 12 6 0.0666 -4.7502 -1.1143 13 6 -0.6318 -6.0239 -1.5156 14 7 -1.6778 -6.3391 -0.5334 15 6 -2.3819 -7.5771 -0.8933 16 6 -3.4616 -7.8715 0.1501 17 7 -4.1642 -9.1058 -0.2092 18 6 -3.8271 -10.3746 0.1785 19 6 -4.7336 -11.2042 -0.3725 20 7 -5.6009 -10.4621 -1.0770 21 6 -5.2696 -9.2037 -0.9787 22 6 -0.4054 -3.5316 -1.5770 23 6 0.2212 -2.3619 -1.2124 24 1 -0.4850 0.8400 0.0004 25 1 2.6931 -3.6960 0.7245 26 1 1.5414 -5.7617 0.0613 27 1 -1.0838 -5.8960 -2.4992 28 1 0.0909 -6.8390 -1.5510 29 1 -1.2934 -6.3989 0.3975 30 1 -2.8461 -7.4596 -1.8727 31 1 -1.6716 -8.4032 -0.9247 32 1 -2.9978 -7.9888 1.1294 33 1 -4.1719 -7.0453 0.1810 34 1 -2.9942 -10.6562 0.8058 35 1 -4.7585 -12.2785 -0.2653 36 1 -5.7913 -8.3776 -1.4391 37 1 -1.2706 -3.4999 -2.2227 38 1 -0.1509 -1.4133 -1.5704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399117298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:17 Heat of formation + Delta-G solvation = 76.199112 kcal Electronic energy + Delta-G solvation = -18952.222976 eV Core-core repulsion = 15987.969157 eV Total energy + Delta-G solvation = -2964.253819 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.13487 -37.93950 -36.43986 -34.27710 -33.31622 -30.61485 -29.59923 -29.32970 -28.31214 -25.96285 -23.45436 -22.51135 -21.45288 -21.02098 -20.98339 -19.93221 -17.50568 -17.35142 -16.13366 -15.50280 -15.31111 -14.65475 -14.47727 -14.27485 -13.93398 -13.78941 -13.69965 -13.33352 -13.12720 -12.62933 -12.44565 -12.00249 -11.83492 -11.58820 -11.44707 -11.11899 -10.98076 -10.57294 -10.44677 -10.12511 -9.81279 -9.62706 -9.42326 -9.18625 -8.66843 -8.31024 -7.50678 -7.37803 -6.81305 -4.40850 1.92060 2.55806 2.73028 3.01629 3.04042 3.05313 3.07078 3.14203 3.88706 4.31738 4.46306 4.59762 4.63588 4.75359 4.89832 5.10581 5.24785 5.37170 5.57289 5.59947 5.68082 5.74176 5.79382 6.14521 6.14939 6.27061 6.37388 6.59064 6.90079 7.01829 7.02500 7.14151 7.24050 7.29281 7.49777 7.56301 7.81185 7.93983 8.00455 8.07770 8.24590 8.59361 8.84180 8.92200 10.12920 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.047673 B = 0.002703 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.190053 B =10357.855510 C =10620.069450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.228 4.228 11 C -0.084 4.084 12 C -0.218 4.218 13 C 0.128 3.872 14 N -0.681 5.681 15 C 0.045 3.955 16 C 0.104 3.896 17 N -0.454 5.454 18 C -0.057 4.057 19 C -0.035 4.035 20 N -0.500 5.500 21 C 0.183 3.817 22 C -0.078 4.078 23 C -0.168 4.168 24 H 0.281 0.719 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.020 0.980 29 H 0.342 0.658 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.204 0.796 37 H 0.087 0.913 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -11.725 0.319 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.110 3.890 10 C -0.248 4.248 11 C -0.103 4.103 12 C -0.220 4.220 13 C 0.001 3.999 14 N -0.313 5.313 15 C -0.086 4.086 16 C -0.019 4.019 17 N -0.137 5.137 18 C -0.191 4.191 19 C -0.183 4.183 20 N -0.218 5.218 21 C -0.099 4.099 22 C -0.097 4.097 23 C -0.187 4.187 24 H 0.092 0.908 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.160 0.840 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.189 0.811 35 H 0.184 0.816 36 H 0.221 0.779 37 H 0.105 0.895 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.436 -11.332 -0.372 13.037 hybrid contribution 1.748 0.450 0.814 1.980 sum -4.687 -10.882 0.442 11.857 Atomic orbital electron populations 1.69830 1.07583 1.29288 1.34779 1.25926 0.94734 1.01359 0.92244 0.86312 0.80496 0.80565 0.79360 1.19238 1.20285 1.18623 1.19623 0.98150 0.91326 1.40058 0.90438 1.17638 0.91059 0.91984 0.88277 1.20930 1.03872 0.92893 1.07081 1.20346 0.95802 0.96235 0.97889 1.18841 1.00686 0.92959 1.09532 1.20549 0.90267 0.94796 0.94333 1.60592 1.32079 1.31979 1.06632 1.22239 0.95453 0.92223 0.98663 1.21923 0.96184 0.84382 0.99371 1.45607 1.22697 1.07338 1.38048 1.22763 1.04602 0.83909 1.07798 1.22288 0.94881 0.99777 1.01321 1.70291 1.27778 1.01661 1.22112 1.25050 0.89650 0.96794 0.98449 1.20495 0.97699 0.92470 0.98993 1.21323 0.99495 0.96798 1.01130 0.90806 0.89124 0.89964 0.91810 0.96176 0.83989 0.90571 0.95146 0.89088 0.87668 0.81135 0.81552 0.77925 0.89457 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.07 10.95 55.55 0.61 -19.46 16 2 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.30 29.60 -169.99 -5.03 13.27 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -12.04 9.05 -37.74 -0.34 -12.38 16 8 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 9 C 0.11 2.95 5.57 -106.83 -0.60 2.35 16 10 C -0.23 -5.43 9.80 -38.88 -0.38 -5.81 16 11 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 12 C -0.22 -4.48 5.41 -104.33 -0.56 -5.04 16 13 C 0.13 2.08 5.80 -4.97 -0.03 2.05 16 14 N -0.68 -9.54 6.49 -115.05 -0.75 -10.28 16 15 C 0.04 0.49 6.01 -3.82 -0.02 0.47 16 16 C 0.10 0.95 6.41 -4.04 -0.03 0.92 16 17 N -0.45 -4.61 2.75 -118.57 -0.33 -4.93 16 18 C -0.06 -0.57 11.58 -16.56 -0.19 -0.76 16 19 C -0.03 -0.39 11.87 -17.81 -0.21 -0.60 16 20 N -0.50 -6.52 11.25 -14.66 -0.16 -6.68 16 21 C 0.18 2.01 12.56 -90.38 -1.14 0.87 16 22 C -0.08 -1.75 9.67 -39.66 -0.38 -2.14 16 23 C -0.17 -4.27 8.70 -38.87 -0.34 -4.60 16 24 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 25 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 26 H 0.08 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 28 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.34 4.69 8.72 -39.29 -0.34 4.35 16 30 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.20 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -28.70 327.77 -10.70 -39.40 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.28 Total: 8.80 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -4.69 Total: -25.05 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.63 Total: -41.36 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.70 -10.70 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399117298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.597 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds