Wall clock time and date at job start Mon Mar 30 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46821 * 270.00284 * 3 2 1 5 5 H 1.48501 * 109.47257 * 29.99856 * 3 2 1 6 6 H 1.48498 * 109.47318 * 150.00210 * 3 2 1 7 7 C 1.39941 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99869 * 197.84807 * 7 2 1 9 9 C 1.41399 * 120.00319 * 17.84028 * 7 2 1 10 10 C 1.40712 * 120.24577 * 204.38609 * 9 7 2 11 11 C 1.37615 * 119.74605 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24435 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.74557 * 179.97438 * 12 11 10 14 14 N 1.46903 * 109.46960 * 90.00399 * 13 12 11 15 15 C 1.46896 * 110.99947 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47268 * 180.02562 * 15 14 13 17 17 N 1.46501 * 109.47195 * 179.97438 * 16 15 14 18 18 C 1.36885 * 126.39342 * 89.99987 * 17 16 15 19 19 C 1.34671 * 106.81545 * 179.97438 * 18 17 16 20 20 N 1.34130 * 108.01905 * 359.97438 * 19 18 17 21 21 C 1.30495 * 109.25813 * 359.72986 * 20 19 18 22 22 C 1.38631 * 120.50645 * 0.26133 * 12 11 10 23 23 C 1.37622 * 120.24099 * 359.44149 * 22 12 11 24 24 H 0.96994 * 119.99970 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.12698 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.87918 * 180.02562 * 11 10 9 27 27 H 1.09001 * 109.47229 * 210.00062 * 13 12 11 28 28 H 1.08996 * 109.47414 * 330.00379 * 13 12 11 29 29 H 1.00898 * 111.00038 * 303.95605 * 14 13 12 30 30 H 1.09009 * 109.47392 * 300.00012 * 15 14 13 31 31 H 1.08993 * 109.47392 * 60.00090 * 15 14 13 32 32 H 1.08995 * 109.46704 * 300.00326 * 16 15 14 33 33 H 1.09001 * 109.46794 * 60.00013 * 16 15 14 34 34 H 1.08001 * 126.59271 * 359.97080 * 18 17 16 35 35 H 1.07994 * 125.99025 * 180.02562 * 19 18 17 36 36 H 1.08007 * 125.65311 * 180.29061 * 21 20 19 37 37 H 1.07998 * 119.87837 * 179.69772 * 22 12 11 38 38 H 1.08002 * 120.12182 * 180.28267 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0825 11 6 1.1798 -4.8065 -0.2899 12 6 0.0666 -4.7502 -1.1143 13 6 -0.6318 -6.0239 -1.5156 14 7 -1.6778 -6.3391 -0.5334 15 6 -2.3819 -7.5771 -0.8933 16 6 -3.4616 -7.8715 0.1501 17 7 -4.1642 -9.1058 -0.2092 18 6 -3.8271 -10.3746 0.1785 19 6 -4.7336 -11.2042 -0.3725 20 7 -5.6009 -10.4621 -1.0770 21 6 -5.2696 -9.2037 -0.9787 22 6 -0.4054 -3.5316 -1.5770 23 6 0.2212 -2.3619 -1.2124 24 1 -0.4850 0.8400 0.0004 25 1 2.6931 -3.6960 0.7245 26 1 1.5414 -5.7617 0.0613 27 1 -1.0838 -5.8960 -2.4992 28 1 0.0909 -6.8390 -1.5510 29 1 -1.2934 -6.3989 0.3975 30 1 -2.8461 -7.4596 -1.8727 31 1 -1.6716 -8.4032 -0.9247 32 1 -2.9978 -7.9888 1.1294 33 1 -4.1719 -7.0453 0.1810 34 1 -2.9942 -10.6562 0.8058 35 1 -4.7585 -12.2785 -0.2653 36 1 -5.7913 -8.3776 -1.4391 37 1 -1.2706 -3.4999 -2.2227 38 1 -0.1509 -1.4133 -1.5704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399117298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:17 Heat of formation + Delta-G solvation = 61.306846 kcal Electronic energy + Delta-G solvation = -18952.868753 eV Core-core repulsion = 15987.969157 eV Total energy + Delta-G solvation = -2964.899596 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.91218 -39.60606 -37.60648 -35.73723 -34.60569 -32.14036 -31.13605 -30.40993 -29.53435 -27.43842 -24.86364 -23.54877 -22.82300 -22.23842 -21.86502 -21.51558 -19.20899 -18.28583 -17.26209 -17.13254 -16.32357 -15.91417 -15.59681 -15.54818 -15.34699 -15.02375 -14.66769 -14.57533 -14.14295 -13.96914 -13.79949 -13.62555 -13.33968 -13.00785 -12.75155 -12.62526 -12.43717 -12.19781 -12.05264 -11.43760 -11.22376 -11.01275 -10.94756 -10.58009 -9.47389 -9.41994 -9.33204 -9.15597 -8.63018 -6.32731 0.94467 1.15650 1.17256 1.38046 1.50834 1.50915 1.86522 2.20713 2.23693 2.70542 3.40244 3.73842 3.82408 3.90062 3.93762 4.12645 4.28300 4.32947 4.38293 4.50237 4.58379 4.62992 4.67583 4.82186 4.83408 4.85189 5.08807 5.17099 5.37930 5.40294 5.47950 5.72768 5.84340 5.92063 6.04569 6.12680 6.24985 6.29431 6.40912 6.46653 6.73051 6.95718 7.05889 7.15231 8.33565 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.047673 B = 0.002703 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.190053 B =10357.855510 C =10620.069450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.502 4.502 8 H 0.073 0.927 9 C 0.079 3.921 10 C -0.244 4.244 11 C -0.083 4.083 12 C -0.201 4.201 13 C 0.134 3.866 14 N -0.688 5.688 15 C 0.054 3.946 16 C 0.111 3.889 17 N -0.454 5.454 18 C -0.054 4.054 19 C -0.058 4.058 20 N -0.538 5.538 21 C 0.174 3.826 22 C -0.085 4.085 23 C -0.193 4.193 24 H 0.287 0.713 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.346 0.654 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.198 0.802 35 H 0.181 0.819 36 H 0.224 0.776 37 H 0.102 0.898 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 -12.908 0.613 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.091 0.909 9 C 0.076 3.924 10 C -0.264 4.264 11 C -0.101 4.101 12 C -0.203 4.203 13 C 0.006 3.994 14 N -0.320 5.320 15 C -0.076 4.076 16 C -0.011 4.011 17 N -0.137 5.137 18 C -0.187 4.187 19 C -0.205 4.205 20 N -0.257 5.257 21 C -0.109 4.109 22 C -0.104 4.104 23 C -0.213 4.213 24 H 0.098 0.902 25 H 0.113 0.887 26 H 0.135 0.865 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.164 0.836 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.215 0.785 35 H 0.199 0.801 36 H 0.241 0.759 37 H 0.120 0.880 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.393 -12.539 -0.072 14.074 hybrid contribution 1.665 0.612 0.696 1.905 sum -4.728 -11.926 0.624 12.844 Atomic orbital electron populations 1.69883 1.08947 1.30463 1.35725 1.26742 0.95492 1.04471 0.91321 0.85226 0.79092 0.76057 0.79470 1.18776 1.19239 1.18260 1.19845 0.98302 0.92694 1.42352 0.90857 1.17979 0.91964 0.93132 0.89289 1.21156 1.04464 0.93263 1.07506 1.20692 0.95413 0.96780 0.97234 1.19293 0.99843 0.94083 1.07071 1.20431 0.91026 0.92918 0.94988 1.60415 1.31290 1.34033 1.06288 1.22161 0.95602 0.90825 0.99024 1.21875 0.95729 0.84172 0.99318 1.45673 1.22485 1.07700 1.37817 1.23207 1.04734 0.83528 1.07238 1.22688 0.95237 1.00838 1.01768 1.70262 1.29150 1.02874 1.23448 1.25502 0.90024 0.96892 0.98464 1.20740 0.97963 0.92529 0.99128 1.21282 1.00431 0.97134 1.02425 0.90202 0.88727 0.86516 0.91321 0.94519 0.83588 0.91008 0.94681 0.87563 0.87187 0.78493 0.80148 0.75935 0.87988 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.20 10.95 21.83 0.24 -42.96 16 2 C 0.03 1.75 5.14 85.25 0.44 2.18 16 3 Si 0.98 38.17 29.60 68.60 2.03 40.20 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 7 C -0.50 -27.14 9.05 23.46 0.21 -26.93 16 8 H 0.07 3.83 7.91 -2.91 -0.02 3.81 16 9 C 0.08 4.22 5.57 -21.29 -0.12 4.10 16 10 C -0.24 -11.67 9.80 22.73 0.22 -11.44 16 11 C -0.08 -3.34 9.67 22.22 0.21 -3.13 16 12 C -0.20 -7.85 5.41 -19.67 -0.11 -7.95 16 13 C 0.13 3.93 5.80 85.56 0.50 4.42 16 14 N -0.69 -17.00 6.49 -517.92 -3.36 -20.36 16 15 C 0.05 1.00 6.01 86.31 0.52 1.52 16 16 C 0.11 1.67 6.41 86.38 0.55 2.22 16 17 N -0.45 -8.02 2.75 -529.05 -1.46 -9.48 16 18 C -0.05 -0.93 11.58 83.09 0.96 0.04 16 19 C -0.06 -1.21 11.87 83.52 0.99 -0.22 16 20 N -0.54 -13.47 11.25 -200.31 -2.25 -15.72 16 21 C 0.17 3.51 12.56 180.26 2.26 5.78 16 22 C -0.08 -3.79 9.67 22.22 0.21 -3.58 16 23 C -0.19 -10.09 8.70 22.73 0.20 -9.89 16 24 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 25 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 26 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 27 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 28 H 0.04 0.98 8.08 -2.39 -0.02 0.96 16 29 H 0.35 8.27 8.72 -89.70 -0.78 7.48 16 30 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.22 3.19 8.06 -2.91 -0.02 3.16 16 37 H 0.10 4.17 8.06 -2.91 -0.02 4.14 16 38 H 0.10 5.36 6.16 -2.91 -0.02 5.34 16 Total: -1.00 -63.48 327.77 2.53 -60.95 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.27 Total: 30.25 kcal Atomic # 6 Polarization: -49.94 SS G_CDS: 7.06 Total: -42.88 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -6.83 Total: -88.52 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -63.48 2.53 -60.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399117298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.254 kcal (2) G-P(sol) polarization free energy of solvation -63.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds