Wall clock time and date at job start Mon Mar 30 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36881 * 126.39887 * 2 1 4 4 C 1.34673 * 106.81372 * 180.25202 * 3 2 1 5 5 N 1.34128 * 108.02257 * 359.74149 * 4 3 2 6 6 C 1.30500 * 109.25568 * 0.02562 * 5 4 3 7 7 C 1.50694 * 125.65051 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.47164 * 90.01906 * 7 6 5 9 9 C 1.46904 * 111.00165 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47342 * 180.02562 * 9 8 7 11 11 C 1.38636 * 119.74817 * 269.73100 * 10 9 8 12 12 C 1.37623 * 120.24816 * 179.72017 * 11 10 9 13 13 C 1.40719 * 119.74474 * 0.56975 * 12 11 10 14 14 C 1.41390 * 120.24413 * 179.68123 * 13 12 11 15 15 H 1.07994 * 119.99951 * 204.39739 * 14 13 12 16 16 C 1.39946 * 120.00227 * 24.40082 * 14 13 12 17 17 N 1.30821 * 119.99734 * 17.85600 * 16 14 13 18 18 Si 1.86800 * 120.00253 * 197.85873 * 16 14 13 19 19 H 1.48504 * 109.46874 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47232 * 119.99812 * 18 16 14 21 21 H 1.48500 * 109.47072 * 239.99935 * 18 16 14 22 22 C 1.40718 * 119.50990 * 359.70383 * 13 12 11 23 23 C 1.37614 * 119.74383 * 359.97438 * 22 13 12 24 24 H 1.08991 * 109.47431 * 270.19641 * 1 2 3 25 25 H 1.09011 * 109.46739 * 30.19120 * 1 2 3 26 26 H 1.09001 * 109.47043 * 150.18501 * 1 2 3 27 27 H 1.07997 * 126.59806 * 359.96888 * 3 2 1 28 28 H 1.08000 * 125.98640 * 179.71925 * 4 3 2 29 29 H 1.08998 * 109.47322 * 330.02107 * 7 6 5 30 30 H 1.08999 * 109.47739 * 210.01888 * 7 6 5 31 31 H 1.00897 * 111.00310 * 303.95703 * 8 7 6 32 32 H 1.09007 * 109.46754 * 300.00246 * 9 8 7 33 33 H 1.09001 * 109.47078 * 59.99818 * 9 8 7 34 34 H 1.07996 * 119.87597 * 359.97164 * 11 10 9 35 35 H 1.07999 * 120.12569 * 180.26941 * 12 11 10 36 36 H 0.97006 * 119.99786 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.12445 * 179.97438 * 22 13 12 38 38 H 1.08006 * 119.87563 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6503 -0.0057 5 7 3.5095 -0.6904 -0.0033 6 6 2.2663 -1.0871 0.0031 7 6 1.8017 -2.5206 0.0082 8 7 1.6565 -2.9834 1.3948 9 6 1.2045 -4.3805 1.4389 10 6 1.0667 -4.8188 2.8741 11 6 2.1473 -5.3946 3.5243 12 6 2.0346 -5.7934 4.8367 13 6 0.8131 -5.6257 5.5149 14 6 0.6836 -6.0378 6.8612 15 1 -0.2898 -6.2829 7.2596 16 6 1.8167 -6.1281 7.6774 17 7 2.9210 -5.5168 7.3335 18 14 1.7526 -7.1215 9.2581 19 1 0.3985 -7.7098 9.4183 20 1 2.7618 -8.2093 9.2004 21 1 2.0461 -6.2346 10.4124 22 6 -0.2787 -5.0453 4.8431 23 6 -0.1412 -4.6479 3.5328 24 1 -0.3634 0.0035 1.0276 25 1 -0.3633 0.8884 -0.5169 26 1 -0.3633 -0.8916 -0.5110 27 1 1.9615 2.1345 -0.0005 28 1 4.4369 1.2609 -0.0115 29 1 2.5342 -3.1418 -0.5073 30 1 0.8409 -2.5931 -0.5015 31 1 2.5176 -2.8659 1.9073 32 1 0.2396 -4.4661 0.9390 33 1 1.9332 -5.0142 0.9334 34 1 3.0823 -5.5270 3.0002 35 1 2.8790 -6.2377 5.3426 36 1 3.7066 -5.5797 7.8991 37 1 -1.2209 -4.9123 5.3539 38 1 -0.9776 -4.2018 3.0153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399131384.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:48 Heat of formation + Delta-G solvation = 77.633397 kcal Electronic energy + Delta-G solvation = -19400.475193 eV Core-core repulsion = 16436.283569 eV Total energy + Delta-G solvation = -2964.191624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01876 -37.78937 -35.72276 -33.98860 -33.61926 -31.03177 -29.40283 -29.15945 -27.22566 -26.58392 -24.64885 -22.74584 -21.34965 -20.98184 -20.00847 -19.60330 -17.28374 -17.16920 -15.85487 -15.60925 -15.14716 -14.63050 -14.29403 -14.14154 -13.93174 -13.57379 -13.32241 -13.03576 -12.86992 -12.76583 -12.42868 -11.94162 -11.87471 -11.64384 -11.48309 -11.06379 -10.93365 -10.54591 -10.33512 -9.94068 -9.58847 -9.56318 -9.38339 -9.13646 -8.46133 -8.08392 -7.43586 -7.28756 -6.75398 -4.34094 2.02703 2.73270 2.80567 3.07487 3.10337 3.11283 3.13728 3.24072 3.93700 4.37565 4.59914 4.63212 4.77781 4.92802 4.99934 5.23926 5.34537 5.44814 5.57305 5.71805 5.77843 5.82403 5.92217 6.26980 6.30064 6.37928 6.41832 6.77202 6.95730 7.08556 7.13172 7.28653 7.33050 7.39449 7.62275 7.68265 7.89927 8.06983 8.14644 8.15735 8.31744 8.65615 8.90822 8.99262 10.18996 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.003409 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.671578 B = 8212.159732 C = 8481.230081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.450 5.450 3 C -0.064 4.064 4 C -0.030 4.030 5 N -0.492 5.492 6 C 0.218 3.782 7 C 0.140 3.860 8 N -0.681 5.681 9 C 0.126 3.874 10 C -0.216 4.216 11 C -0.093 4.093 12 C -0.166 4.166 13 C 0.113 3.887 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.791 5.791 18 Si 0.907 3.093 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.275 1.275 22 C -0.230 4.230 23 C -0.068 4.068 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.350 0.650 32 H 0.062 0.938 33 H 0.023 0.977 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.280 0.720 37 H 0.090 0.910 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 8.409 -12.189 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.132 5.132 3 C -0.197 4.197 4 C -0.178 4.178 5 N -0.211 5.211 6 C -0.045 4.045 7 C 0.009 3.991 8 N -0.314 5.314 9 C -0.002 4.002 10 C -0.217 4.217 11 C -0.112 4.112 12 C -0.186 4.186 13 C 0.110 3.890 14 C -0.492 4.492 15 H 0.096 0.904 16 C -0.142 4.142 17 N -0.416 5.416 18 Si 0.731 3.269 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.200 1.200 22 C -0.249 4.249 23 C -0.087 4.087 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.189 0.811 28 H 0.185 0.815 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.169 0.831 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.784 8.202 -12.055 14.844 hybrid contribution 0.185 -0.011 0.603 0.631 sum -2.600 8.191 -11.452 14.318 Atomic orbital electron populations 1.22028 0.76562 1.03992 1.04206 1.45229 1.07687 1.06518 1.53744 1.22659 0.91451 0.92495 1.13096 1.22260 0.96354 0.91230 1.07987 1.70243 1.18665 1.12086 1.20108 1.23184 0.85555 0.90896 1.04868 1.20195 1.00062 0.86098 0.92734 1.60739 1.38087 1.22544 1.10069 1.20569 0.98403 0.85769 0.95413 1.18849 0.95528 1.12495 0.94878 1.20549 0.95837 0.99618 0.95223 1.21281 0.99346 1.05085 0.92843 1.17630 0.91077 0.87596 0.92664 1.19637 0.94343 1.39948 0.95315 0.90448 1.25917 0.94796 0.93631 0.99866 1.69843 1.02628 1.31907 1.37241 0.86293 0.79614 0.80111 0.80890 1.18405 1.19700 1.20008 1.20963 0.99410 1.09091 0.95474 1.20307 0.95435 0.98511 0.94436 0.89929 0.90077 0.89498 0.81090 0.81512 0.92451 0.90093 0.83099 0.91970 0.95851 0.89780 0.86536 0.90922 0.89158 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.97 59.85 0.66 1.29 16 2 N -0.45 -5.49 3.15 -121.28 -0.38 -5.88 16 3 C -0.06 -0.73 11.58 -16.56 -0.19 -0.92 16 4 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16 5 N -0.49 -7.96 11.25 -10.82 -0.12 -8.08 16 6 C 0.22 3.18 7.41 -155.42 -1.15 2.03 16 7 C 0.14 1.89 5.99 -4.98 -0.03 1.86 16 8 N -0.68 -11.13 6.48 -116.34 -0.75 -11.88 16 9 C 0.13 2.15 5.80 -4.98 -0.03 2.12 16 10 C -0.22 -4.62 5.41 -104.33 -0.56 -5.18 16 11 C -0.09 -2.17 9.67 -39.66 -0.38 -2.55 16 12 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 13 C 0.11 3.03 5.57 -106.82 -0.60 2.43 16 14 C -0.46 -12.38 9.05 -37.74 -0.34 -12.72 16 15 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.79 -20.67 10.95 55.55 0.61 -20.07 16 18 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 23 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.09 0.65 7.04 -51.93 -0.37 0.29 16 27 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.17 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.92 7.06 -51.93 -0.37 0.55 16 31 H 0.35 6.38 8.71 -39.29 -0.34 6.03 16 32 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 36 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 37 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -30.19 325.44 -9.98 -40.17 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.17 Total: 10.17 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -4.03 Total: -23.05 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.65 Total: -45.90 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.19 -9.98 -40.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399131384.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.800 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds