Wall clock time and date at job start Mon Mar 30 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34291 * 125.24543 * 2 1 4 4 C 1.46740 * 107.47561 * 180.02562 * 3 2 1 5 5 N 1.30888 * 126.85490 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00655 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47330 * 119.99900 * 6 5 4 8 8 C 1.38633 * 119.74658 * 269.73207 * 7 6 5 9 9 C 1.37622 * 120.24013 * 179.71807 * 8 7 6 10 10 C 1.40713 * 119.74909 * 0.57274 * 9 8 7 11 11 C 1.41393 * 120.24536 * 179.67777 * 10 9 8 12 12 H 1.08002 * 119.99774 * 155.30923 * 11 10 9 13 13 C 1.39947 * 120.00154 * 335.31235 * 11 10 9 14 14 N 1.30819 * 119.99980 * 342.23361 * 13 11 10 15 15 Si 1.86800 * 120.00055 * 162.23132 * 13 11 10 16 16 H 1.48496 * 109.47099 * 94.66371 * 15 13 11 17 17 H 1.48499 * 109.46943 * 214.66636 * 15 13 11 18 18 H 1.48505 * 109.47146 * 334.66294 * 15 13 11 19 19 C 1.40718 * 119.50779 * 359.70307 * 10 9 8 20 20 C 1.37613 * 119.74706 * 359.97438 * 19 10 9 21 21 N 1.38437 * 106.30283 * 359.74030 * 4 3 2 22 22 H 0.96992 * 126.33320 * 180.26917 * 21 4 3 23 23 N 1.36884 * 125.24723 * 180.02562 * 2 1 3 24 24 C 1.46504 * 125.31067 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.46655 * 270.00147 * 1 2 3 26 26 H 1.08998 * 109.46772 * 29.99532 * 1 2 3 27 27 H 1.08994 * 109.47365 * 149.99875 * 1 2 3 28 28 H 1.08007 * 126.26066 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47608 * 239.99972 * 6 5 4 30 30 H 1.09002 * 109.46647 * 0.02562 * 6 5 4 31 31 H 1.07999 * 119.88019 * 359.97438 * 8 7 6 32 32 H 1.08004 * 120.12553 * 180.27638 * 9 8 7 33 33 H 0.96998 * 120.00181 * 180.02562 * 14 13 11 34 34 H 1.08007 * 120.12105 * 179.97438 * 19 10 9 35 35 H 1.08003 * 119.87408 * 179.97438 * 20 19 10 36 36 H 1.09000 * 109.47180 * 89.99930 * 24 23 2 37 37 H 1.08998 * 109.46883 * 329.99532 * 24 23 2 38 38 H 1.09003 * 109.47187 * 209.99869 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2820 1.0967 0.0000 4 6 3.6794 0.6489 -0.0006 5 7 4.7466 1.4066 -0.0004 6 6 6.0784 0.7964 -0.0016 7 6 6.8305 1.2342 -1.2320 8 6 6.7437 0.4840 -2.3946 9 6 7.4216 0.8776 -3.5258 10 6 8.2145 2.0396 -3.4957 11 6 8.9209 2.4499 -4.6498 12 1 9.1898 3.4880 -4.7777 13 6 9.2715 1.5108 -5.6263 14 7 9.2685 0.2348 -5.3377 15 14 9.7436 2.0792 -7.3420 16 1 11.2203 2.2082 -7.4318 17 1 9.2718 1.0859 -8.3399 18 1 9.1140 3.3956 -7.6181 19 6 8.2997 2.7900 -2.3083 20 6 7.6079 2.3813 -1.1912 21 7 3.6439 -0.7350 0.0051 22 1 4.4103 -1.3295 0.0098 23 7 2.2970 -1.1179 -0.0005 24 6 1.8093 -2.4994 -0.0017 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.9394 2.1210 -0.0004 29 1 6.6233 1.1112 0.8884 30 1 5.9806 -0.2892 -0.0032 31 1 6.1386 -0.4104 -2.4138 32 1 7.3490 0.2941 -4.4317 33 1 9.5119 -0.4161 -6.0145 34 1 8.9058 3.6834 -2.2741 35 1 7.6722 2.9555 -0.2787 36 1 1.6888 -2.8413 -1.0296 37 1 0.8490 -2.5461 0.5119 38 1 2.5275 -3.1386 0.5120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399132423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:26 Heat of formation + Delta-G solvation = 113.439446 kcal Electronic energy + Delta-G solvation = -19480.219455 eV Core-core repulsion = 16517.580498 eV Total energy + Delta-G solvation = -2962.638957 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49889 -37.54480 -35.22662 -33.60094 -32.58943 -31.68993 -29.71992 -29.12105 -27.90580 -26.74750 -25.11109 -23.30223 -20.87650 -20.30719 -20.13211 -19.18027 -17.52060 -17.18617 -15.56946 -15.25042 -15.03995 -14.71862 -14.28329 -13.79221 -13.70374 -13.44773 -13.28786 -12.97752 -12.82253 -12.60161 -12.42585 -12.21730 -11.84243 -11.67005 -11.51002 -10.99233 -10.83752 -10.59919 -10.40608 -9.92808 -9.45914 -9.30014 -9.04876 -9.02621 -8.75094 -7.32344 -7.16252 -6.70260 -6.61190 -4.23862 1.89516 1.95485 2.84164 3.11300 3.16436 3.20163 3.27057 3.57332 4.00109 4.04053 4.43308 4.68947 4.71957 4.93048 4.94444 5.14699 5.25803 5.32915 5.57633 5.76169 5.87843 5.94281 6.10220 6.26575 6.36112 6.44142 6.59221 6.62335 6.94566 7.05444 7.17199 7.40091 7.42979 7.49963 7.73625 7.90609 7.99612 8.16350 8.26494 8.41561 8.74705 8.91584 9.00356 9.09803 10.27987 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.026436 B = 0.003660 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.911675 B = 7648.804301 C = 8062.424110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.152 3.848 3 C -0.252 4.252 4 C 0.409 3.591 5 N -0.576 5.576 6 C 0.124 3.876 7 C -0.198 4.198 8 C -0.094 4.094 9 C -0.164 4.164 10 C 0.110 3.890 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.076 3.924 14 N -0.798 5.798 15 Si 0.906 3.094 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.226 4.226 20 C -0.073 4.073 21 N -0.560 5.560 22 H 0.430 0.570 23 N -0.422 5.422 24 C 0.109 3.891 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.156 0.844 29 H 0.062 0.938 30 H 0.012 0.988 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.278 0.722 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.202 -6.798 8.477 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.040 3.960 3 C -0.284 4.284 4 C 0.139 3.861 5 N -0.307 5.307 6 C -0.005 4.005 7 C -0.200 4.200 8 C -0.113 4.113 9 C -0.184 4.184 10 C 0.108 3.892 11 C -0.495 4.495 12 H 0.095 0.905 13 C -0.141 4.141 14 N -0.424 5.424 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.184 1.184 19 C -0.245 4.245 20 C -0.092 4.092 21 N -0.300 5.300 22 H 0.275 0.725 23 N -0.218 5.218 24 C -0.033 4.033 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.174 0.826 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.799 -6.538 8.388 19.045 hybrid contribution 0.910 -1.194 -0.909 1.755 sum -14.889 -7.732 7.479 18.368 Atomic orbital electron populations 1.20548 0.87120 1.04095 1.03386 1.20419 0.93042 0.85370 0.97187 1.21320 0.88507 0.98126 1.20495 1.21724 0.95222 0.77435 0.91706 1.73183 0.96954 1.28787 1.31781 1.20363 0.89466 0.93952 0.96671 1.18947 1.06005 1.00056 0.94954 1.20422 0.99386 0.97765 0.93764 1.21233 0.99648 1.00142 0.97334 1.17594 0.89228 0.90920 0.91462 1.19568 1.31967 0.95568 1.02371 0.90545 1.25890 0.93358 0.94416 1.00406 1.69840 1.35753 1.02027 1.34774 0.86351 0.79206 0.79871 0.81568 1.19657 1.20155 1.18436 1.20977 1.06629 1.03283 0.93654 1.20327 0.96794 0.95241 0.96826 1.45655 0.95441 1.06880 1.82031 0.72459 1.45707 0.95286 1.04548 1.76241 1.21731 1.00201 0.78983 1.02398 0.90013 0.89102 0.91124 0.82628 0.92003 0.96918 0.90610 0.86719 0.91129 0.89078 0.89430 0.92148 0.89598 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 9.81 36.01 0.35 -0.21 16 2 C 0.15 1.68 6.89 -81.73 -0.56 1.11 16 3 C -0.25 -3.64 10.93 -37.54 -0.41 -4.05 16 4 C 0.41 7.22 8.04 -153.74 -1.24 5.98 16 5 N -0.58 -12.00 10.63 -59.77 -0.64 -12.64 16 6 C 0.12 2.59 6.51 -5.19 -0.03 2.56 16 7 C -0.20 -4.84 5.49 -104.33 -0.57 -5.41 16 8 C -0.09 -2.42 9.67 -39.66 -0.38 -2.80 16 9 C -0.16 -4.59 8.70 -38.87 -0.34 -4.92 16 10 C 0.11 3.15 5.57 -106.83 -0.60 2.55 16 11 C -0.46 -13.04 9.05 -37.74 -0.34 -13.38 16 12 H 0.08 2.06 7.91 -52.49 -0.41 1.65 16 13 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16 14 N -0.80 -21.56 10.97 55.55 0.61 -20.95 16 15 Si 0.91 19.46 29.59 -169.99 -5.03 14.43 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 19 C -0.23 -6.02 9.80 -38.87 -0.38 -6.40 16 20 C -0.07 -1.83 9.67 -39.66 -0.38 -2.21 16 21 N -0.56 -8.19 7.12 32.39 0.23 -7.96 16 22 H 0.43 5.85 7.44 -182.66 -1.36 4.49 16 23 N -0.42 -4.80 4.04 -63.66 -0.26 -5.06 16 24 C 0.11 0.72 11.01 59.85 0.66 1.38 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.32 7.61 -51.93 -0.40 -0.08 16 28 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 29 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 30 H 0.01 0.24 6.15 -51.93 -0.32 -0.08 16 31 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.11 3.28 6.18 -52.48 -0.32 2.96 16 33 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 34 H 0.09 2.28 8.06 -52.48 -0.42 1.86 16 35 H 0.09 1.99 8.06 -52.48 -0.42 1.57 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.34 7.55 -51.93 -0.39 -0.05 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -33.81 323.98 -10.66 -44.46 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.14 Total: 6.71 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -4.32 Total: -23.88 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.05 Total: -46.60 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.81 -10.66 -44.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399132423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.903 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds