Wall clock time and date at job start Mon Mar 30 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34291 * 125.24543 * 2 1 4 4 C 1.46740 * 107.47561 * 180.02562 * 3 2 1 5 5 N 1.30888 * 126.85490 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00655 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47330 * 119.99900 * 6 5 4 8 8 C 1.38633 * 119.74658 * 269.73207 * 7 6 5 9 9 C 1.37622 * 120.24013 * 179.71807 * 8 7 6 10 10 C 1.40713 * 119.74909 * 0.57274 * 9 8 7 11 11 C 1.41393 * 120.24536 * 179.67777 * 10 9 8 12 12 H 1.08002 * 119.99774 * 155.30923 * 11 10 9 13 13 C 1.39947 * 120.00154 * 335.31235 * 11 10 9 14 14 N 1.30819 * 119.99980 * 342.23361 * 13 11 10 15 15 Si 1.86800 * 120.00055 * 162.23132 * 13 11 10 16 16 H 1.48496 * 109.47099 * 94.66371 * 15 13 11 17 17 H 1.48499 * 109.46943 * 214.66636 * 15 13 11 18 18 H 1.48505 * 109.47146 * 334.66294 * 15 13 11 19 19 C 1.40718 * 119.50779 * 359.70307 * 10 9 8 20 20 C 1.37613 * 119.74706 * 359.97438 * 19 10 9 21 21 N 1.38437 * 106.30283 * 359.74030 * 4 3 2 22 22 H 0.96992 * 126.33320 * 180.26917 * 21 4 3 23 23 N 1.36884 * 125.24723 * 180.02562 * 2 1 3 24 24 C 1.46504 * 125.31067 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.46655 * 270.00147 * 1 2 3 26 26 H 1.08998 * 109.46772 * 29.99532 * 1 2 3 27 27 H 1.08994 * 109.47365 * 149.99875 * 1 2 3 28 28 H 1.08007 * 126.26066 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47608 * 239.99972 * 6 5 4 30 30 H 1.09002 * 109.46647 * 0.02562 * 6 5 4 31 31 H 1.07999 * 119.88019 * 359.97438 * 8 7 6 32 32 H 1.08004 * 120.12553 * 180.27638 * 9 8 7 33 33 H 0.96998 * 120.00181 * 180.02562 * 14 13 11 34 34 H 1.08007 * 120.12105 * 179.97438 * 19 10 9 35 35 H 1.08003 * 119.87408 * 179.97438 * 20 19 10 36 36 H 1.09000 * 109.47180 * 89.99930 * 24 23 2 37 37 H 1.08998 * 109.46883 * 329.99532 * 24 23 2 38 38 H 1.09003 * 109.47187 * 209.99869 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2820 1.0967 0.0000 4 6 3.6794 0.6489 -0.0006 5 7 4.7466 1.4066 -0.0004 6 6 6.0784 0.7964 -0.0016 7 6 6.8305 1.2342 -1.2320 8 6 6.7437 0.4840 -2.3946 9 6 7.4216 0.8776 -3.5258 10 6 8.2145 2.0396 -3.4957 11 6 8.9209 2.4499 -4.6498 12 1 9.1898 3.4880 -4.7777 13 6 9.2715 1.5108 -5.6263 14 7 9.2685 0.2348 -5.3377 15 14 9.7436 2.0792 -7.3420 16 1 11.2203 2.2082 -7.4318 17 1 9.2718 1.0859 -8.3399 18 1 9.1140 3.3956 -7.6181 19 6 8.2997 2.7900 -2.3083 20 6 7.6079 2.3813 -1.1912 21 7 3.6439 -0.7350 0.0051 22 1 4.4103 -1.3295 0.0098 23 7 2.2970 -1.1179 -0.0005 24 6 1.8093 -2.4994 -0.0017 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.9394 2.1210 -0.0004 29 1 6.6233 1.1112 0.8884 30 1 5.9806 -0.2892 -0.0032 31 1 6.1386 -0.4104 -2.4138 32 1 7.3490 0.2941 -4.4317 33 1 9.5119 -0.4161 -6.0145 34 1 8.9058 3.6834 -2.2741 35 1 7.6722 2.9555 -0.2787 36 1 1.6888 -2.8413 -1.0296 37 1 0.8490 -2.5461 0.5119 38 1 2.5275 -3.1386 0.5120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399132423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:26 Heat of formation + Delta-G solvation = 92.192892 kcal Electronic energy + Delta-G solvation = -19481.140775 eV Core-core repulsion = 16517.580498 eV Total energy + Delta-G solvation = -2963.560277 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56692 -39.52032 -36.67753 -35.42168 -33.46599 -33.06266 -31.41607 -31.11191 -28.86367 -28.21422 -26.31470 -24.92967 -22.92330 -21.99006 -21.27221 -20.46840 -19.24403 -18.61991 -17.20852 -16.47280 -16.22021 -15.97884 -15.82550 -15.67013 -15.47496 -14.42932 -14.15140 -14.08876 -13.90448 -13.86899 -13.73411 -13.51808 -13.24626 -13.16082 -12.94953 -12.74912 -12.54629 -12.43764 -12.19231 -11.60575 -11.31824 -11.02632 -10.86542 -10.19793 -10.12355 -9.38954 -9.19039 -8.65196 -7.84248 -6.33978 0.84909 0.97188 0.99677 1.11558 1.35900 1.47474 1.53559 2.20179 2.28948 2.70358 3.06017 3.52642 3.75590 4.09741 4.18068 4.23160 4.38155 4.47166 4.50603 4.53252 4.63210 4.70082 4.79781 4.86739 4.96357 4.99139 5.10758 5.14492 5.23382 5.33131 5.42808 5.46516 5.68366 5.81602 5.95770 6.07549 6.23075 6.36360 6.42018 6.66841 6.82473 6.92368 7.01650 7.60838 8.32996 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.026436 B = 0.003660 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.911675 B = 7648.804301 C = 8062.424110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.185 3.815 3 C -0.311 4.311 4 C 0.404 3.596 5 N -0.636 5.636 6 C 0.134 3.866 7 C -0.192 4.192 8 C -0.099 4.099 9 C -0.187 4.187 10 C 0.078 3.922 11 C -0.504 4.504 12 H 0.075 0.925 13 C 0.034 3.966 14 N -0.829 5.829 15 Si 0.985 3.015 16 H -0.260 1.260 17 H -0.264 1.264 18 H -0.260 1.260 19 C -0.242 4.242 20 C -0.080 4.080 21 N -0.564 5.564 22 H 0.432 0.568 23 N -0.414 5.414 24 C 0.096 3.904 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.158 0.842 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.288 0.712 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.124 0.876 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.727 -8.358 8.573 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 C -0.343 4.343 4 C 0.137 3.863 5 N -0.372 5.372 6 C 0.004 3.996 7 C -0.194 4.194 8 C -0.118 4.118 9 C -0.206 4.206 10 C 0.076 3.924 11 C -0.533 4.533 12 H 0.093 0.907 13 C -0.180 4.180 14 N -0.455 5.455 15 Si 0.805 3.195 16 H -0.185 1.185 17 H -0.188 1.188 18 H -0.183 1.183 19 C -0.261 4.261 20 C -0.099 4.099 21 N -0.302 5.302 22 H 0.278 0.722 23 N -0.209 5.209 24 C -0.044 4.044 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.175 0.825 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.345 -8.170 8.507 21.810 hybrid contribution 1.450 -0.920 -0.796 1.892 sum -16.895 -9.091 7.712 20.678 Atomic orbital electron populations 1.20794 0.82794 1.05856 1.05458 1.21220 0.95229 0.84070 0.92459 1.21443 0.87473 0.99662 1.25744 1.22181 0.95904 0.78580 0.89675 1.73157 0.96918 1.29786 1.37298 1.20181 0.90197 0.94619 0.94584 1.19441 1.04889 0.99053 0.96014 1.20607 0.99160 0.98433 0.93624 1.21205 1.01060 1.00629 0.97711 1.17947 0.90142 0.91770 0.92527 1.19822 1.33676 0.96049 1.03788 0.90708 1.26810 0.92660 0.94192 1.04370 1.69889 1.35889 1.03211 1.36482 0.85161 0.79267 0.79380 0.75668 1.18456 1.18825 1.18337 1.21193 1.07337 1.03682 0.93896 1.20623 0.96410 0.95703 0.97134 1.45726 0.97531 1.06401 1.80504 0.72186 1.46392 0.93684 1.06655 1.74200 1.22218 1.02041 0.76265 1.03861 0.87509 0.88144 0.88582 0.82484 0.92011 0.95625 0.89125 0.88192 0.90177 0.88367 0.87328 0.91061 0.85825 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 9.81 71.24 0.70 0.03 16 2 C 0.19 3.56 6.89 40.87 0.28 3.84 16 3 C -0.31 -8.76 10.93 23.59 0.26 -8.51 16 4 C 0.40 14.29 8.04 135.71 1.09 15.39 16 5 N -0.64 -27.11 10.63 -343.01 -3.65 -30.76 16 6 C 0.13 5.66 6.51 85.63 0.56 6.22 16 7 C -0.19 -9.62 5.49 -19.67 -0.11 -9.73 16 8 C -0.10 -5.24 9.67 22.22 0.21 -5.03 16 9 C -0.19 -10.87 8.70 22.73 0.20 -10.67 16 10 C 0.08 4.67 5.57 -21.29 -0.12 4.55 16 11 C -0.50 -29.35 9.05 23.46 0.21 -29.14 16 12 H 0.07 4.20 7.91 -2.91 -0.02 4.18 16 13 C 0.03 1.82 5.14 85.26 0.44 2.26 16 14 N -0.83 -45.81 10.97 21.83 0.24 -45.57 16 15 Si 0.99 40.27 29.59 68.60 2.03 42.30 16 16 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 19 C -0.24 -13.38 9.80 22.73 0.22 -13.16 16 20 C -0.08 -4.11 9.67 22.22 0.21 -3.89 16 21 N -0.56 -15.82 7.12 -51.43 -0.37 -16.19 16 22 H 0.43 11.36 7.44 -213.37 -1.59 9.78 16 23 N -0.41 -8.18 4.04 -355.33 -1.44 -9.62 16 24 C 0.10 0.85 11.01 127.77 1.41 2.26 16 25 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.10 0.30 7.61 -2.39 -0.02 0.28 16 28 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 29 H 0.06 2.52 8.08 -2.39 -0.02 2.50 16 30 H 0.03 0.97 6.15 -2.39 -0.01 0.96 16 31 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.10 6.00 6.18 -2.91 -0.02 5.98 16 33 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 34 H 0.10 5.12 8.06 -2.91 -0.02 5.09 16 35 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.12 0.26 7.55 -2.39 -0.02 0.24 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -77.73 323.98 1.87 -75.86 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.52 Total: 29.56 kcal Atomic # 6 Polarization: -51.15 SS G_CDS: 5.57 Total: -45.58 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -5.21 Total: -102.14 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -77.73 1.87 -75.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399132423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.051 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds