Wall clock time and date at job start Mon Mar 30 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86803 * 120.00154 * 2 1 4 4 H 1.48494 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47108 * 300.00259 * 3 2 1 6 6 H 1.48500 * 109.46885 * 60.00405 * 3 2 1 7 7 C 1.39946 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00164 * 191.15351 * 7 2 1 9 9 C 1.41393 * 119.99892 * 11.14291 * 7 2 1 10 10 C 1.40723 * 120.24695 * 208.42411 * 9 7 2 11 11 C 1.37612 * 119.74283 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.25419 * 0.02728 * 11 10 9 13 13 C 1.50698 * 119.74862 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.46942 * 94.20411 * 13 12 11 15 15 C 1.36888 * 126.39731 * 92.95800 * 14 13 12 16 16 C 1.34665 * 106.81630 * 180.11835 * 15 14 13 17 17 N 1.34130 * 108.01939 * 359.58785 * 16 15 14 18 18 C 1.30494 * 109.25971 * 0.26074 * 17 16 15 19 19 C 1.50701 * 125.65462 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47206 * 84.88307 * 19 18 17 21 21 N 1.46898 * 109.47077 * 184.83773 * 20 19 18 22 22 C 1.38634 * 120.49856 * 0.24313 * 12 11 10 23 23 C 1.37619 * 120.24769 * 359.45286 * 22 12 11 24 24 H 0.97007 * 119.99909 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.12580 * 0.04164 * 10 9 7 26 26 H 1.08010 * 119.87228 * 179.97438 * 11 10 9 27 27 H 1.08997 * 109.47245 * 334.20322 * 13 12 11 28 28 H 1.08997 * 109.46932 * 214.19852 * 13 12 11 29 29 H 1.07998 * 126.59042 * 0.02562 * 15 14 13 30 30 H 1.07998 * 125.98997 * 179.84209 * 16 15 14 31 31 H 1.08991 * 109.47447 * 204.88633 * 19 18 17 32 32 H 1.08998 * 109.46578 * 324.88673 * 19 18 17 33 33 H 1.09001 * 109.47062 * 304.83929 * 20 19 18 34 34 H 1.09000 * 109.46802 * 64.83983 * 20 19 18 35 35 H 1.00903 * 110.99805 * 56.04767 * 21 20 19 36 36 H 1.00902 * 110.99955 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.87327 * 179.70441 * 22 12 11 38 38 H 1.07996 * 120.12844 * 180.26842 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0726 -1.2208 0.1804 9 6 1.3210 -2.4248 -0.2377 10 6 1.7969 -3.6287 0.3141 11 6 1.1205 -4.8032 0.0762 12 6 -0.0254 -4.8036 -0.7043 13 6 -0.7568 -6.0964 -0.9580 14 7 -1.8284 -6.2530 0.0287 15 6 -3.1324 -5.8641 -0.1198 16 6 -3.7690 -6.1921 1.0207 17 7 -2.8801 -6.7738 1.8395 18 6 -1.7156 -6.8138 1.2520 19 6 -0.4537 -7.3896 1.8412 20 6 -0.4161 -8.8985 1.5903 21 7 0.7541 -9.4777 2.2635 22 6 -0.5002 -3.6244 -1.2576 23 6 0.1566 -2.4371 -1.0278 24 1 -0.4850 0.8401 0.0004 25 1 2.6894 -3.6307 0.9222 26 1 1.4841 -5.7284 0.4984 27 1 -0.0604 -6.9306 -0.8735 28 1 -1.1852 -6.0809 -1.9601 29 1 -3.5668 -5.3848 -0.9846 30 1 -4.8133 -6.0209 1.2364 31 1 0.4123 -6.9218 1.3732 32 1 -0.4341 -7.1992 2.9142 33 1 -1.3244 -9.3550 1.9836 34 1 -0.3491 -9.0870 0.5188 35 1 0.7484 -9.2609 3.2489 36 1 0.8012 -10.4743 2.1131 37 1 -1.3911 -3.6371 -1.8679 38 1 -0.2174 -1.5190 -1.4563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399241312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:04 Heat of formation + Delta-G solvation = 66.961683 kcal Electronic energy + Delta-G solvation = -20075.476640 eV Core-core repulsion = 17110.822256 eV Total energy + Delta-G solvation = -2964.654384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67311 -37.77354 -35.54289 -34.51392 -33.07568 -30.91151 -30.12828 -29.39870 -27.31043 -26.70620 -24.03741 -22.48759 -21.41574 -20.68722 -20.40845 -19.13937 -17.45333 -16.72828 -15.90088 -15.56893 -15.26931 -14.92327 -14.36157 -14.01558 -13.85729 -13.61655 -13.29534 -13.18344 -12.64967 -12.34469 -12.22122 -11.83676 -11.74222 -11.69878 -11.25308 -11.15214 -11.07531 -10.83192 -10.52112 -9.87427 -9.62143 -9.51046 -9.32408 -9.02194 -8.80979 -7.94413 -7.61961 -7.45459 -6.83499 -4.51191 2.38960 2.60116 2.93023 3.00292 3.01903 3.07047 3.48783 3.52953 3.85578 4.38190 4.54496 4.90290 5.10904 5.18489 5.23060 5.32935 5.51611 5.58103 5.69607 5.75672 5.82551 5.89788 6.05826 6.16962 6.21255 6.32051 6.74197 6.82124 6.96547 6.97672 7.12193 7.17911 7.21941 7.29703 7.46787 7.64991 7.66914 7.90682 7.93419 8.15819 8.51026 8.52025 8.76678 8.82253 10.09858 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.023685 B = 0.004574 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.874324 B = 6119.727823 C = 6700.103272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.117 3.883 10 C -0.223 4.223 11 C -0.071 4.071 12 C -0.247 4.247 13 C 0.163 3.837 14 N -0.434 5.434 15 C -0.051 4.051 16 C -0.042 4.042 17 N -0.501 5.501 18 C 0.207 3.793 19 C -0.036 4.036 20 C 0.070 3.930 21 N -0.850 5.850 22 C -0.082 4.082 23 C -0.161 4.161 24 H 0.281 0.719 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.342 0.658 36 H 0.341 0.659 37 H 0.085 0.915 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 -10.518 -0.765 10.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.243 4.243 11 C -0.090 4.090 12 C -0.249 4.249 13 C 0.043 3.957 14 N -0.114 5.114 15 C -0.186 4.186 16 C -0.191 4.191 17 N -0.221 5.221 18 C -0.056 4.056 19 C -0.075 4.075 20 C -0.062 4.062 21 N -0.380 5.380 22 C -0.101 4.101 23 C -0.180 4.180 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.184 0.816 30 H 0.180 0.820 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.104 0.896 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.790 -10.164 -0.589 10.337 hybrid contribution -0.439 0.806 -0.253 0.952 sum -2.230 -9.358 -0.842 9.657 Atomic orbital electron populations 1.69799 1.07549 1.29239 1.35353 1.25949 0.94851 1.01465 0.92249 0.86188 0.80828 0.80673 0.78643 1.18347 1.19670 1.19855 1.19701 0.96186 0.90551 1.42278 0.90220 1.17705 0.91196 0.92127 0.87516 1.21020 1.03199 0.93281 1.06766 1.20419 0.94877 0.96609 0.97100 1.18992 1.00899 0.93086 1.11930 1.20583 0.87325 0.97695 0.90110 1.45857 1.08822 1.42386 1.14351 1.22618 0.84612 1.08606 1.02720 1.22111 0.99597 1.05571 0.91778 1.70122 0.99450 1.21301 1.31212 1.22842 0.96142 1.02167 0.84401 1.19974 0.91659 0.94188 1.01668 1.21695 0.91261 0.93957 0.99245 1.58683 1.43944 1.17695 1.17674 1.20486 0.97737 0.92838 0.98997 1.21343 0.98829 0.96364 1.01508 0.90786 0.88678 0.89075 0.89878 0.89943 0.81607 0.82033 0.88937 0.89459 0.94849 0.91321 0.84560 0.84658 0.89637 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.28 10.84 55.55 0.60 -19.68 16 2 C 0.07 1.79 5.25 -17.34 -0.09 1.70 16 3 Si 0.91 18.32 29.57 -169.99 -5.03 13.29 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -11.86 9.06 -37.74 -0.34 -12.20 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.12 3.04 5.55 -106.82 -0.59 2.45 16 10 C -0.22 -5.30 9.80 -38.87 -0.38 -5.68 16 11 C -0.07 -1.51 9.23 -39.66 -0.37 -1.87 16 12 C -0.25 -5.02 5.49 -104.33 -0.57 -5.59 16 13 C 0.16 2.66 5.79 -5.19 -0.03 2.63 16 14 N -0.43 -7.45 2.73 -115.19 -0.31 -7.76 16 15 C -0.05 -0.83 11.58 -16.56 -0.19 -1.03 16 16 C -0.04 -0.71 11.87 -17.81 -0.21 -0.92 16 17 N -0.50 -9.38 11.25 -10.82 -0.12 -9.50 16 18 C 0.21 3.64 7.16 -155.42 -1.11 2.52 16 19 C -0.04 -0.53 5.68 -27.88 -0.16 -0.68 16 20 C 0.07 0.85 6.77 -3.82 -0.03 0.82 16 21 N -0.85 -8.72 9.62 -10.37 -0.10 -8.82 16 22 C -0.08 -1.81 9.68 -39.66 -0.38 -2.20 16 23 C -0.16 -4.05 8.66 -38.87 -0.34 -4.39 16 24 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 25 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 26 H 0.09 1.69 6.16 -52.48 -0.32 1.37 16 27 H 0.08 1.21 7.58 -51.93 -0.39 0.82 16 28 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 29 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.16 2.27 8.06 -52.49 -0.42 1.84 16 31 H 0.09 1.43 5.09 -51.93 -0.26 1.17 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.34 3.14 8.99 -39.29 -0.35 2.79 16 36 H 0.34 2.78 9.08 -39.29 -0.36 2.42 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.12 3.15 6.21 -52.49 -0.33 2.83 16 LS Contribution 320.94 15.07 4.84 4.84 Total: -1.00 -29.05 320.94 -9.87 -38.92 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -4.95 Total: 13.16 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -4.80 Total: -24.44 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.07 Total: -45.76 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.05 -9.87 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399241312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.879 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds