Wall clock time and date at job start Mon Mar 30 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86803 * 120.00154 * 2 1 4 4 H 1.48494 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47108 * 300.00259 * 3 2 1 6 6 H 1.48500 * 109.46885 * 60.00405 * 3 2 1 7 7 C 1.39946 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00164 * 191.15351 * 7 2 1 9 9 C 1.41393 * 119.99892 * 11.14291 * 7 2 1 10 10 C 1.40723 * 120.24695 * 208.42411 * 9 7 2 11 11 C 1.37612 * 119.74283 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.25419 * 0.02728 * 11 10 9 13 13 C 1.50698 * 119.74862 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.46942 * 94.20411 * 13 12 11 15 15 C 1.36888 * 126.39731 * 92.95800 * 14 13 12 16 16 C 1.34665 * 106.81630 * 180.11835 * 15 14 13 17 17 N 1.34130 * 108.01939 * 359.58785 * 16 15 14 18 18 C 1.30494 * 109.25971 * 0.26074 * 17 16 15 19 19 C 1.50701 * 125.65462 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47206 * 84.88307 * 19 18 17 21 21 N 1.46898 * 109.47077 * 184.83773 * 20 19 18 22 22 C 1.38634 * 120.49856 * 0.24313 * 12 11 10 23 23 C 1.37619 * 120.24769 * 359.45286 * 22 12 11 24 24 H 0.97007 * 119.99909 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.12580 * 0.04164 * 10 9 7 26 26 H 1.08010 * 119.87228 * 179.97438 * 11 10 9 27 27 H 1.08997 * 109.47245 * 334.20322 * 13 12 11 28 28 H 1.08997 * 109.46932 * 214.19852 * 13 12 11 29 29 H 1.07998 * 126.59042 * 0.02562 * 15 14 13 30 30 H 1.07998 * 125.98997 * 179.84209 * 16 15 14 31 31 H 1.08991 * 109.47447 * 204.88633 * 19 18 17 32 32 H 1.08998 * 109.46578 * 324.88673 * 19 18 17 33 33 H 1.09001 * 109.47062 * 304.83929 * 20 19 18 34 34 H 1.09000 * 109.46802 * 64.83983 * 20 19 18 35 35 H 1.00903 * 110.99805 * 56.04767 * 21 20 19 36 36 H 1.00902 * 110.99955 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.87327 * 179.70441 * 22 12 11 38 38 H 1.07996 * 120.12844 * 180.26842 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0726 -1.2208 0.1804 9 6 1.3210 -2.4248 -0.2377 10 6 1.7969 -3.6287 0.3141 11 6 1.1205 -4.8032 0.0762 12 6 -0.0254 -4.8036 -0.7043 13 6 -0.7568 -6.0964 -0.9580 14 7 -1.8284 -6.2530 0.0287 15 6 -3.1324 -5.8641 -0.1198 16 6 -3.7690 -6.1921 1.0207 17 7 -2.8801 -6.7738 1.8395 18 6 -1.7156 -6.8138 1.2520 19 6 -0.4537 -7.3896 1.8412 20 6 -0.4161 -8.8985 1.5903 21 7 0.7541 -9.4777 2.2635 22 6 -0.5002 -3.6244 -1.2576 23 6 0.1566 -2.4371 -1.0278 24 1 -0.4850 0.8401 0.0004 25 1 2.6894 -3.6307 0.9222 26 1 1.4841 -5.7284 0.4984 27 1 -0.0604 -6.9306 -0.8735 28 1 -1.1852 -6.0809 -1.9601 29 1 -3.5668 -5.3848 -0.9846 30 1 -4.8133 -6.0209 1.2364 31 1 0.4123 -6.9218 1.3732 32 1 -0.4341 -7.1992 2.9142 33 1 -1.3244 -9.3550 1.9836 34 1 -0.3491 -9.0870 0.5188 35 1 0.7484 -9.2609 3.2489 36 1 0.8012 -10.4743 2.1131 37 1 -1.3911 -3.6371 -1.8679 38 1 -0.2174 -1.5190 -1.4563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399241312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:04 Heat of formation + Delta-G solvation = 50.279513 kcal Electronic energy + Delta-G solvation = -20076.200033 eV Core-core repulsion = 17110.822256 eV Total energy + Delta-G solvation = -2965.377777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.97209 -39.52538 -36.52936 -36.14513 -34.67115 -32.03871 -31.82182 -31.15892 -28.74559 -28.06576 -25.67617 -23.56046 -23.06458 -22.22657 -21.96947 -20.45759 -19.29037 -18.01879 -17.28766 -16.84448 -16.70774 -16.08444 -15.82337 -15.54665 -15.35383 -14.99046 -14.54672 -14.42698 -14.28489 -13.92250 -13.54728 -13.49684 -13.18597 -12.93387 -12.83811 -12.76505 -12.49641 -12.23109 -12.18208 -11.60014 -11.30997 -11.15609 -10.90415 -10.43239 -9.64679 -9.42754 -9.28170 -9.21395 -8.64829 -6.42884 0.76458 1.09605 1.22167 1.36436 1.44138 1.51323 2.11529 2.18744 2.22465 2.74343 3.37187 3.67734 3.82115 3.89410 4.09496 4.13264 4.20930 4.22500 4.40550 4.46237 4.53329 4.58315 4.65827 4.80735 4.99535 5.01176 5.05782 5.11471 5.28576 5.37865 5.51794 5.65332 5.86450 5.92879 6.05679 6.11594 6.17316 6.33231 6.36968 6.60916 6.65214 6.89402 6.96660 7.21976 8.31016 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.023685 B = 0.004574 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.874324 B = 6119.727823 C = 6700.103272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.268 1.268 7 C -0.498 4.498 8 H 0.076 0.924 9 C 0.084 3.916 10 C -0.241 4.241 11 C -0.071 4.071 12 C -0.230 4.230 13 C 0.167 3.833 14 N -0.440 5.440 15 C -0.056 4.056 16 C -0.058 4.058 17 N -0.530 5.530 18 C 0.197 3.803 19 C -0.033 4.033 20 C 0.083 3.917 21 N -0.853 5.853 22 C -0.085 4.085 23 C -0.186 4.186 24 H 0.287 0.713 25 H 0.098 0.902 26 H 0.121 0.879 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.192 0.808 30 H 0.183 0.817 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.348 0.652 36 H 0.355 0.645 37 H 0.108 0.892 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 -11.885 -1.228 12.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.193 1.193 7 C -0.528 4.528 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.260 4.260 11 C -0.090 4.090 12 C -0.232 4.232 13 C 0.047 3.953 14 N -0.121 5.121 15 C -0.190 4.190 16 C -0.206 4.206 17 N -0.250 5.250 18 C -0.066 4.066 19 C -0.072 4.072 20 C -0.049 4.049 21 N -0.384 5.384 22 C -0.104 4.104 23 C -0.206 4.206 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.139 0.861 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.209 0.791 30 H 0.200 0.800 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.169 0.831 37 H 0.126 0.874 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.945 -11.560 -1.049 11.770 hybrid contribution -0.477 1.037 -0.091 1.145 sum -2.421 -10.524 -1.140 10.859 Atomic orbital electron populations 1.69863 1.08936 1.30351 1.36592 1.26768 0.95586 1.04556 0.91278 0.85118 0.79355 0.76099 0.78911 1.18053 1.18775 1.19264 1.19930 0.96296 0.91844 1.44708 0.90596 1.18044 0.92126 0.93137 0.88550 1.21231 1.03840 0.93798 1.07179 1.20762 0.94746 0.96852 0.96610 1.19420 1.00126 0.94367 1.09262 1.20655 0.87537 0.95948 0.91186 1.45837 1.09166 1.42667 1.14402 1.23111 0.84372 1.08063 1.03436 1.22594 1.00622 1.05472 0.91912 1.70118 1.00361 1.22366 1.32196 1.23325 0.96659 1.02055 0.84565 1.20020 0.90199 0.95838 1.01192 1.21504 0.91725 0.92108 0.99608 1.58655 1.42831 1.18803 1.18138 1.20780 0.98123 0.92507 0.99020 1.21308 0.99660 0.96938 1.02698 0.90254 0.88420 0.86118 0.87559 0.87289 0.79061 0.79981 0.89521 0.89810 0.95347 0.90936 0.83877 0.83125 0.87361 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.82 10.84 21.83 0.24 -43.58 16 2 C 0.03 1.62 5.25 85.26 0.45 2.07 16 3 Si 0.98 38.29 29.57 68.60 2.03 40.32 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.50 -26.82 9.06 23.46 0.21 -26.61 16 8 H 0.08 3.95 7.87 -2.91 -0.02 3.92 16 9 C 0.08 4.48 5.55 -21.29 -0.12 4.36 16 10 C -0.24 -11.54 9.80 22.73 0.22 -11.32 16 11 C -0.07 -2.90 9.23 22.22 0.20 -2.70 16 12 C -0.23 -8.84 5.49 -19.67 -0.11 -8.95 16 13 C 0.17 4.83 5.79 85.63 0.50 5.32 16 14 N -0.44 -13.85 2.73 -518.35 -1.42 -15.27 16 15 C -0.06 -1.68 11.58 83.08 0.96 -0.72 16 16 C -0.06 -1.87 11.87 83.52 0.99 -0.88 16 17 N -0.53 -19.06 11.25 -188.14 -2.12 -21.18 16 18 C 0.20 6.51 7.16 138.13 0.99 7.50 16 19 C -0.03 -0.91 5.68 29.85 0.17 -0.74 16 20 C 0.08 1.80 6.77 86.30 0.58 2.39 16 21 N -0.85 -15.38 9.62 -186.72 -1.80 -17.18 16 22 C -0.09 -3.71 9.68 22.22 0.22 -3.50 16 23 C -0.19 -9.60 8.66 22.73 0.20 -9.41 16 24 H 0.29 13.69 8.30 -92.70 -0.77 12.93 16 25 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 26 H 0.12 4.16 6.16 -2.91 -0.02 4.14 16 27 H 0.11 2.63 7.58 -2.39 -0.02 2.62 16 28 H 0.11 2.64 8.11 -2.39 -0.02 2.62 16 29 H 0.19 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.18 4.77 8.06 -2.91 -0.02 4.74 16 31 H 0.09 2.46 5.09 -2.39 -0.01 2.45 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.35 5.65 8.99 -89.69 -0.81 4.85 16 36 H 0.35 4.85 9.08 -89.69 -0.81 4.04 16 37 H 0.11 4.12 8.06 -2.91 -0.02 4.09 16 38 H 0.10 5.50 6.21 -2.91 -0.02 5.48 16 Total: -1.00 -64.02 320.94 1.87 -62.15 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -0.53 Total: 37.91 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 5.46 Total: -43.18 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -5.09 Total: -97.21 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -64.02 1.87 -62.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399241312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.433 kcal (2) G-P(sol) polarization free energy of solvation -64.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds