Wall clock time and date at job start Mon Mar 30 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35044 * 126.40002 * 2 1 4 4 N 1.30495 * 108.70145 * 179.82593 * 3 2 1 5 5 C 1.34128 * 109.25558 * 0.43945 * 4 3 2 6 6 C 1.34669 * 108.02310 * 359.72477 * 5 4 3 7 7 C 1.50694 * 126.59409 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47090 * 94.96238 * 7 6 5 9 9 C 1.46896 * 110.99955 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.47084 * 179.97438 * 9 8 7 11 11 C 1.38624 * 119.74852 * 269.72676 * 10 9 8 12 12 C 1.37629 * 120.24972 * 179.72098 * 11 10 9 13 13 C 1.40711 * 119.73845 * 0.56563 * 12 11 10 14 14 C 1.41397 * 120.24193 * 179.67955 * 13 12 11 15 15 H 1.08000 * 119.99968 * 155.31451 * 14 13 12 16 16 C 1.39937 * 120.00015 * 335.31720 * 14 13 12 17 17 N 1.30825 * 120.00280 * 342.23345 * 16 14 13 18 18 Si 1.86802 * 119.99959 * 162.22905 * 16 14 13 19 19 H 1.48496 * 109.47237 * 94.66472 * 18 16 14 20 20 H 1.48497 * 109.47132 * 214.66402 * 18 16 14 21 21 H 1.48503 * 109.47403 * 334.66417 * 18 16 14 22 22 C 1.40721 * 119.51803 * 359.70968 * 13 12 11 23 23 C 1.37624 * 119.73614 * 359.97438 * 22 13 12 24 24 H 1.09004 * 109.47250 * 269.69514 * 1 2 3 25 25 H 1.08996 * 109.47279 * 149.69518 * 1 2 3 26 26 H 1.09006 * 109.47114 * 29.69376 * 1 2 3 27 27 H 1.08000 * 125.64965 * 359.96996 * 3 2 1 28 28 H 1.08006 * 125.98666 * 179.72744 * 5 4 3 29 29 H 1.08996 * 109.47039 * 214.95872 * 7 6 5 30 30 H 1.09001 * 109.47025 * 334.96118 * 7 6 5 31 31 H 1.00897 * 110.99956 * 56.04305 * 8 7 6 32 32 H 1.09003 * 109.46939 * 299.99634 * 9 8 7 33 33 H 1.08997 * 109.47738 * 59.99755 * 9 8 7 34 34 H 1.08007 * 119.87909 * 359.97438 * 11 10 9 35 35 H 1.07994 * 120.12618 * 180.27964 * 12 11 10 36 36 H 0.97003 * 119.99795 * 180.02562 * 17 16 14 37 37 H 1.07987 * 120.13065 * 179.97438 * 22 13 12 38 38 H 1.07998 * 119.86917 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0038 5 6 3.5460 -0.6505 -0.0035 6 6 2.2772 -1.1018 -0.0058 7 6 1.8363 -2.5428 -0.0130 8 7 1.5783 -2.9828 1.3646 9 6 1.1460 -4.3864 1.3967 10 6 0.8920 -4.8013 2.8231 11 6 1.9213 -5.3468 3.5745 12 6 1.7023 -5.7239 4.8798 13 6 0.4245 -5.5650 5.4473 14 6 0.1859 -5.9551 6.7852 15 1 -0.6162 -5.4985 7.3460 16 6 0.9892 -6.9328 7.3828 17 7 1.7156 -7.7270 6.6390 18 14 1.0243 -7.1041 9.2426 19 1 0.0501 -8.1431 9.6626 20 1 2.3880 -7.4994 9.6776 21 1 0.6628 -5.8057 9.8662 22 6 -0.6144 -5.0154 4.6733 23 6 -0.3706 -4.6393 3.3721 24 1 -0.3634 -0.0055 1.0277 25 1 -0.3633 -0.8872 -0.5185 26 1 -0.3634 0.8928 -0.5091 27 1 1.9335 2.1144 -0.0005 28 1 4.4369 -1.2611 -0.0067 29 1 0.9247 -2.6409 -0.6025 30 1 2.6204 -3.1605 -0.4509 31 1 0.9011 -2.3851 1.8142 32 1 0.2297 -4.4977 0.8169 33 1 1.9255 -5.0166 0.9687 34 1 2.8999 -5.4725 3.1352 35 1 2.5068 -6.1445 5.4648 36 1 2.2721 -8.4049 7.0533 37 1 -1.5989 -4.8894 5.0987 38 1 -1.1663 -4.2169 2.7763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399241483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:24 Heat of formation + Delta-G solvation = 77.164739 kcal Electronic energy + Delta-G solvation = -19372.686886 eV Core-core repulsion = 16408.474939 eV Total energy + Delta-G solvation = -2964.211946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07666 -37.83198 -35.84668 -34.07085 -33.61668 -31.14825 -29.46926 -29.15945 -27.12333 -26.63797 -24.52951 -22.78525 -21.44747 -20.97649 -20.16270 -19.73783 -17.31009 -17.14955 -15.92279 -15.56452 -15.34269 -14.84803 -14.32409 -14.12259 -13.88667 -13.56349 -13.38578 -13.04012 -12.99447 -12.85047 -12.43339 -12.07141 -11.95027 -11.64957 -11.51958 -11.07050 -10.99377 -10.51332 -10.42301 -9.97554 -9.64918 -9.60482 -9.39079 -9.14761 -8.45652 -8.09682 -7.45442 -7.32585 -6.77561 -4.36372 1.97186 2.69641 2.74038 3.05638 3.07187 3.09922 3.15367 3.22026 3.92249 4.45081 4.49114 4.65404 4.67410 4.82712 4.90609 5.00989 5.15273 5.39102 5.60145 5.70924 5.76622 5.81432 5.85249 6.18467 6.30311 6.34858 6.43630 6.74043 6.94278 7.05932 7.12501 7.26368 7.29895 7.34068 7.57427 7.61815 7.85918 8.04636 8.06459 8.12882 8.28989 8.63683 8.88415 8.96743 10.17026 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.003268 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.848628 B = 8567.071045 C = 8634.911438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.460 5.460 3 C 0.175 3.825 4 N -0.496 5.496 5 C -0.011 4.011 6 C -0.016 4.016 7 C 0.133 3.867 8 N -0.677 5.677 9 C 0.125 3.875 10 C -0.216 4.216 11 C -0.077 4.077 12 C -0.167 4.167 13 C 0.114 3.886 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.792 5.792 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.228 4.228 23 C -0.085 4.085 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.202 0.798 28 H 0.169 0.831 29 H 0.029 0.971 30 H 0.093 0.907 31 H 0.337 0.663 32 H 0.018 0.982 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.281 0.719 37 H 0.090 0.910 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.325 9.939 -11.253 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.144 5.144 3 C -0.107 4.107 4 N -0.214 5.214 5 C -0.159 4.159 6 C -0.131 4.131 7 C 0.003 3.997 8 N -0.308 5.308 9 C -0.002 4.002 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.186 4.186 13 C 0.111 3.889 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.417 5.417 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.248 4.248 23 C -0.104 4.104 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.219 0.781 28 H 0.186 0.814 29 H 0.047 0.953 30 H 0.112 0.888 31 H 0.155 0.845 32 H 0.036 0.964 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.979 10.081 -11.118 15.040 hybrid contribution -1.699 -0.571 0.558 1.877 sum -2.678 9.509 -10.560 14.461 Atomic orbital electron populations 1.22041 0.76939 1.04404 1.03914 1.45297 1.07436 1.06900 1.54769 1.24866 0.85764 0.93301 1.06781 1.70266 1.19363 1.12203 1.19579 1.22056 0.95869 0.90791 1.07225 1.21232 0.91352 0.89435 1.11059 1.20300 0.99848 0.88082 0.91444 1.60698 1.51634 1.04210 1.14301 1.20584 0.97032 0.87385 0.95229 1.18848 0.94923 1.12829 0.95120 1.20507 0.96288 0.98147 0.94653 1.21319 0.97519 1.05085 0.94719 1.17626 0.90627 0.88181 0.92469 1.19599 1.14034 1.18502 0.97155 0.90510 1.25910 0.93591 0.94116 1.00533 1.69828 1.20946 1.13360 1.37550 0.86330 0.78441 0.79586 0.82559 1.19606 1.19984 1.18425 1.20919 0.97865 1.11606 0.94420 1.20328 0.94843 1.00025 0.95224 0.90219 0.89891 0.89450 0.78136 0.81382 0.95345 0.88849 0.84510 0.96358 0.91583 0.89363 0.86522 0.90858 0.89198 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 11.01 59.84 0.66 1.15 16 2 N -0.46 -5.02 3.15 -121.37 -0.38 -5.40 16 3 C 0.17 2.00 12.56 -90.38 -1.14 0.86 16 4 N -0.50 -7.23 11.25 -14.66 -0.16 -7.40 16 5 C -0.01 -0.15 11.79 -17.81 -0.21 -0.36 16 6 C -0.02 -0.21 6.46 -81.60 -0.53 -0.74 16 7 C 0.13 1.64 5.92 -4.98 -0.03 1.61 16 8 N -0.68 -10.34 6.48 -116.34 -0.75 -11.09 16 9 C 0.12 2.09 5.80 -4.97 -0.03 2.06 16 10 C -0.22 -4.55 5.42 -104.33 -0.56 -5.12 16 11 C -0.08 -1.79 9.67 -39.66 -0.38 -2.18 16 12 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 13 C 0.11 3.02 5.57 -106.82 -0.60 2.43 16 14 C -0.46 -12.32 9.05 -37.74 -0.34 -12.66 16 15 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.79 -20.46 10.97 55.55 0.61 -19.85 16 18 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 23 C -0.09 -1.85 9.67 -39.66 -0.38 -2.23 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.55 7.30 -51.93 -0.38 0.17 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.17 2.15 8.06 -52.48 -0.42 1.73 16 29 H 0.03 0.31 7.38 -51.93 -0.38 -0.07 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.34 5.22 8.72 -39.29 -0.34 4.88 16 32 H 0.02 0.28 8.08 -51.93 -0.42 -0.14 16 33 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 35 H 0.12 3.15 6.18 -52.49 -0.32 2.83 16 36 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 37 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 38 H 0.08 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -30.07 325.97 -10.36 -40.43 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.20 Total: 8.76 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -4.35 Total: -23.97 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.69 Total: -43.74 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.07 -10.36 -40.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399241483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.596 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds