Wall clock time and date at job start Mon Mar 30 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35044 * 126.40002 * 2 1 4 4 N 1.30495 * 108.70145 * 179.82593 * 3 2 1 5 5 C 1.34128 * 109.25558 * 0.43945 * 4 3 2 6 6 C 1.34669 * 108.02310 * 359.72477 * 5 4 3 7 7 C 1.50694 * 126.59409 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47090 * 94.96238 * 7 6 5 9 9 C 1.46896 * 110.99955 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.47084 * 179.97438 * 9 8 7 11 11 C 1.38624 * 119.74852 * 269.72676 * 10 9 8 12 12 C 1.37629 * 120.24972 * 179.72098 * 11 10 9 13 13 C 1.40711 * 119.73845 * 0.56563 * 12 11 10 14 14 C 1.41397 * 120.24193 * 179.67955 * 13 12 11 15 15 H 1.08000 * 119.99968 * 155.31451 * 14 13 12 16 16 C 1.39937 * 120.00015 * 335.31720 * 14 13 12 17 17 N 1.30825 * 120.00280 * 342.23345 * 16 14 13 18 18 Si 1.86802 * 119.99959 * 162.22905 * 16 14 13 19 19 H 1.48496 * 109.47237 * 94.66472 * 18 16 14 20 20 H 1.48497 * 109.47132 * 214.66402 * 18 16 14 21 21 H 1.48503 * 109.47403 * 334.66417 * 18 16 14 22 22 C 1.40721 * 119.51803 * 359.70968 * 13 12 11 23 23 C 1.37624 * 119.73614 * 359.97438 * 22 13 12 24 24 H 1.09004 * 109.47250 * 269.69514 * 1 2 3 25 25 H 1.08996 * 109.47279 * 149.69518 * 1 2 3 26 26 H 1.09006 * 109.47114 * 29.69376 * 1 2 3 27 27 H 1.08000 * 125.64965 * 359.96996 * 3 2 1 28 28 H 1.08006 * 125.98666 * 179.72744 * 5 4 3 29 29 H 1.08996 * 109.47039 * 214.95872 * 7 6 5 30 30 H 1.09001 * 109.47025 * 334.96118 * 7 6 5 31 31 H 1.00897 * 110.99956 * 56.04305 * 8 7 6 32 32 H 1.09003 * 109.46939 * 299.99634 * 9 8 7 33 33 H 1.08997 * 109.47738 * 59.99755 * 9 8 7 34 34 H 1.08007 * 119.87909 * 359.97438 * 11 10 9 35 35 H 1.07994 * 120.12618 * 180.27964 * 12 11 10 36 36 H 0.97003 * 119.99795 * 180.02562 * 17 16 14 37 37 H 1.07987 * 120.13065 * 179.97438 * 22 13 12 38 38 H 1.07998 * 119.86917 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0038 5 6 3.5460 -0.6505 -0.0035 6 6 2.2772 -1.1018 -0.0058 7 6 1.8363 -2.5428 -0.0130 8 7 1.5783 -2.9828 1.3646 9 6 1.1460 -4.3864 1.3967 10 6 0.8920 -4.8013 2.8231 11 6 1.9213 -5.3468 3.5745 12 6 1.7023 -5.7239 4.8798 13 6 0.4245 -5.5650 5.4473 14 6 0.1859 -5.9551 6.7852 15 1 -0.6162 -5.4985 7.3460 16 6 0.9892 -6.9328 7.3828 17 7 1.7156 -7.7270 6.6390 18 14 1.0243 -7.1041 9.2426 19 1 0.0501 -8.1431 9.6626 20 1 2.3880 -7.4994 9.6776 21 1 0.6628 -5.8057 9.8662 22 6 -0.6144 -5.0154 4.6733 23 6 -0.3706 -4.6393 3.3721 24 1 -0.3634 -0.0055 1.0277 25 1 -0.3633 -0.8872 -0.5185 26 1 -0.3634 0.8928 -0.5091 27 1 1.9335 2.1144 -0.0005 28 1 4.4369 -1.2611 -0.0067 29 1 0.9247 -2.6409 -0.6025 30 1 2.6204 -3.1605 -0.4509 31 1 0.9011 -2.3851 1.8142 32 1 0.2297 -4.4977 0.8169 33 1 1.9255 -5.0166 0.9687 34 1 2.8999 -5.4725 3.1352 35 1 2.5068 -6.1445 5.4648 36 1 2.2721 -8.4049 7.0533 37 1 -1.5989 -4.8894 5.0987 38 1 -1.1663 -4.2169 2.7763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399241483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:23 Heat of formation + Delta-G solvation = 60.265028 kcal Electronic energy + Delta-G solvation = -19373.419712 eV Core-core repulsion = 16408.474939 eV Total energy + Delta-G solvation = -2964.944773 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.96436 -39.57678 -37.18174 -35.46435 -34.80347 -32.59760 -31.18561 -30.68532 -28.17780 -27.77281 -25.89709 -24.20686 -22.83363 -22.35242 -21.68926 -20.83430 -19.20998 -18.01541 -17.17461 -16.86828 -16.66747 -16.02477 -15.67671 -15.40024 -15.38064 -15.03945 -14.53715 -14.29622 -13.96537 -13.78289 -13.73610 -13.54870 -13.35493 -13.01502 -12.99680 -12.72752 -12.67301 -12.23916 -12.09090 -11.43960 -11.23051 -11.00175 -10.92006 -10.48489 -9.52409 -9.32776 -9.19375 -9.13425 -8.63290 -6.32564 0.91980 1.11339 1.17297 1.37440 1.48679 1.53936 1.95659 2.20490 2.22130 2.71539 3.47127 3.77458 3.85529 3.92850 4.00083 4.08988 4.32854 4.35077 4.39619 4.51116 4.58075 4.66320 4.67755 4.74347 4.87198 4.92025 5.08686 5.17050 5.40107 5.42011 5.48304 5.72910 5.79326 5.94486 6.10040 6.13561 6.27818 6.35262 6.40791 6.45320 6.73083 6.95567 7.06131 7.15000 8.33788 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.003268 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.848628 B = 8567.071045 C = 8634.911438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.458 5.458 3 C 0.180 3.820 4 N -0.539 5.539 5 C -0.039 4.039 6 C -0.023 4.023 7 C 0.141 3.859 8 N -0.689 5.689 9 C 0.133 3.867 10 C -0.201 4.201 11 C -0.087 4.087 12 C -0.193 4.193 13 C 0.079 3.921 14 C -0.505 4.505 15 H 0.074 0.926 16 C 0.035 3.965 17 N -0.826 5.826 18 Si 0.980 3.020 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.260 1.260 22 C -0.244 4.244 23 C -0.083 4.083 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.239 0.761 28 H 0.167 0.833 29 H 0.051 0.949 30 H 0.098 0.902 31 H 0.337 0.663 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.287 0.713 37 H 0.095 0.905 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 11.078 -12.535 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.141 5.141 3 C -0.103 4.103 4 N -0.257 5.257 5 C -0.187 4.187 6 C -0.139 4.139 7 C 0.012 3.988 8 N -0.321 5.321 9 C 0.006 3.994 10 C -0.202 4.202 11 C -0.105 4.105 12 C -0.213 4.213 13 C 0.077 3.923 14 C -0.534 4.534 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.452 5.452 18 Si 0.801 3.199 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.264 4.264 23 C -0.102 4.102 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.135 0.865 27 H 0.255 0.745 28 H 0.184 0.816 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.154 0.846 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.302 11.222 -12.423 16.899 hybrid contribution -1.320 -0.809 0.767 1.728 sum -3.622 10.413 -11.656 16.044 Atomic orbital electron populations 1.22343 0.74489 1.06348 1.04635 1.45522 1.08882 1.06076 1.53644 1.25594 0.85111 0.94843 1.04705 1.70222 1.21496 1.12542 1.21487 1.22248 0.96780 0.91164 1.08512 1.21253 0.91296 0.90183 1.11143 1.20268 1.00951 0.87736 0.89868 1.60543 1.51676 1.03342 1.16502 1.20471 0.98479 0.88361 0.92136 1.19336 0.93882 1.09950 0.97044 1.20759 0.97729 0.98091 0.93969 1.21268 0.97108 1.06874 0.96033 1.17967 0.91513 0.89519 0.93301 1.19845 1.15476 1.20100 0.98017 0.90822 1.26747 0.92773 0.93184 1.05281 1.69883 1.21765 1.14009 1.39563 0.85227 0.78845 0.79556 0.76287 1.18589 1.19092 1.18363 1.21161 0.97682 1.11868 0.95674 1.20697 0.96119 0.98919 0.94439 0.90006 0.89154 0.86480 0.74540 0.81588 0.93089 0.88385 0.84565 0.94022 0.90970 0.88140 0.88680 0.90219 0.88650 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 11.01 127.77 1.41 2.06 16 2 N -0.46 -8.74 3.15 -537.90 -1.70 -10.44 16 3 C 0.18 3.70 12.56 180.26 2.26 5.97 16 4 N -0.54 -15.25 11.25 -200.31 -2.25 -17.50 16 5 C -0.04 -1.08 11.79 83.52 0.98 -0.09 16 6 C -0.02 -0.55 6.46 40.95 0.26 -0.29 16 7 C 0.14 3.06 5.92 85.55 0.51 3.56 16 8 N -0.69 -19.11 6.48 -521.99 -3.38 -22.49 16 9 C 0.13 4.01 5.80 85.56 0.50 4.51 16 10 C -0.20 -8.11 5.42 -19.68 -0.11 -8.21 16 11 C -0.09 -4.04 9.67 22.22 0.21 -3.83 16 12 C -0.19 -10.42 8.70 22.73 0.20 -10.22 16 13 C 0.08 4.36 5.57 -21.29 -0.12 4.24 16 14 C -0.50 -27.86 9.05 23.46 0.21 -27.65 16 15 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 16 C 0.03 1.79 5.14 85.25 0.44 2.23 16 17 N -0.83 -44.20 10.97 21.82 0.24 -43.96 16 18 Si 0.98 38.98 29.59 68.60 2.03 41.01 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 22 C -0.24 -11.90 9.80 22.73 0.22 -11.68 16 23 C -0.08 -3.44 9.67 22.22 0.21 -3.23 16 24 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.09 0.83 7.30 -2.39 -0.02 0.81 16 26 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.24 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 29 H 0.05 0.90 7.38 -2.39 -0.02 0.89 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.34 9.41 8.72 -89.70 -0.78 8.62 16 32 H 0.04 1.09 8.08 -2.39 -0.02 1.07 16 33 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 34 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.10 5.43 6.18 -2.91 -0.02 5.41 16 36 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 37 H 0.10 4.40 8.06 -2.92 -0.02 4.38 16 38 H 0.12 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -67.61 325.97 2.42 -65.19 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.28 Total: 30.83 kcal Atomic # 6 Polarization: -49.84 SS G_CDS: 7.20 Total: -42.64 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -7.09 Total: -94.39 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -67.61 2.42 -65.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399241483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.452 kcal (2) G-P(sol) polarization free energy of solvation -67.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds