Wall clock time and date at job start Mon Mar 30 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47019 * 111.00053 * 2 1 4 4 C 1.53094 * 109.26055 * 182.39507 * 3 2 1 5 5 O 1.43017 * 109.29234 * 303.17654 * 4 3 2 6 6 C 1.43012 * 113.73791 * 58.59672 * 5 4 3 7 7 H 1.09000 * 109.50215 * 61.36209 * 6 5 4 8 8 C 1.53003 * 109.50388 * 181.44129 * 6 5 4 9 9 S 1.81402 * 109.47471 * 299.91523 * 8 6 5 10 10 C 1.81399 * 102.99913 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46721 * 179.97438 * 10 9 8 12 12 C 1.50691 * 115.55474 * 294.73906 * 11 10 9 13 13 H 1.08003 * 119.99938 * 99.76309 * 12 11 10 14 14 C 1.37874 * 120.00307 * 279.48604 * 12 11 10 15 15 N 1.31512 * 119.99989 * 355.06446 * 14 12 11 16 16 Si 1.86807 * 120.00237 * 175.06647 * 14 12 11 17 17 H 1.48498 * 109.46840 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46919 * 119.99872 * 16 14 12 19 19 H 1.48501 * 109.47046 * 239.99657 * 16 14 12 20 20 C 1.53003 * 117.51512 * 80.44747 * 11 10 9 21 21 C 1.52992 * 60.00289 * 107.47762 * 20 11 10 22 22 C 1.47014 * 111.00444 * 123.63576 * 2 1 3 23 23 H 1.09000 * 109.47128 * 296.36148 * 1 2 3 24 24 H 1.08996 * 109.47649 * 56.36156 * 1 2 3 25 25 H 1.09002 * 109.47109 * 176.36682 * 1 2 3 26 26 H 1.09000 * 109.50376 * 302.33489 * 3 2 1 27 27 H 1.09003 * 109.50284 * 62.45555 * 3 2 1 28 28 H 1.08994 * 109.50579 * 63.08816 * 4 3 2 29 29 H 1.08994 * 109.50764 * 183.17588 * 4 3 2 30 30 H 1.09000 * 109.47102 * 179.91521 * 8 6 5 31 31 H 1.08996 * 109.47052 * 59.91933 * 8 6 5 32 32 H 1.09000 * 109.47297 * 60.00409 * 10 9 8 33 33 H 1.08994 * 109.47421 * 300.00132 * 10 9 8 34 34 H 0.97004 * 120.00394 * 185.00446 * 15 14 12 35 35 H 1.09006 * 117.49729 * 214.96765 * 20 11 10 36 36 H 1.09006 * 117.50112 * 359.97438 * 20 11 10 37 37 H 1.09000 * 117.49759 * 252.51277 * 21 20 11 38 38 H 1.08999 * 117.50536 * 107.48994 * 21 20 11 39 39 H 1.08998 * 109.49978 * 57.67181 * 22 2 1 40 40 H 1.08994 * 109.50378 * 297.54412 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0604 5 8 4.0182 0.5571 1.0396 6 6 3.5249 -0.7848 1.0708 7 1 3.8385 -1.3089 0.1679 8 6 4.0826 -1.5057 2.2997 9 16 5.8945 -1.5322 2.2149 10 6 6.3611 -2.4117 3.7312 11 6 7.8853 -2.5196 3.8095 12 6 8.5333 -3.3603 2.7400 13 1 8.9883 -2.8867 1.8826 14 6 8.5503 -4.7338 2.8586 15 7 8.0885 -5.3054 3.9493 16 14 9.2293 -5.7830 1.4702 17 1 9.6837 -4.9044 0.3626 18 1 10.3767 -6.5827 1.9696 19 1 8.1679 -6.6960 0.9750 20 6 8.6558 -1.2960 4.3099 21 6 8.5220 -2.5326 5.2008 22 6 1.9959 -0.7602 1.1427 23 1 -0.3633 0.4563 0.9208 24 1 -0.3634 0.5692 -0.8555 25 1 -0.3633 -1.0256 -0.0651 26 1 1.6132 1.9092 -0.8681 27 1 1.6826 1.8826 0.9110 28 1 3.8384 0.8645 -0.9965 29 1 3.9220 2.3399 -0.0037 30 1 3.7051 -2.5280 2.3237 31 1 3.7687 -0.9813 3.2021 32 1 5.9266 -3.4112 3.7199 33 1 5.9903 -1.8641 4.5976 34 1 8.1665 -6.2654 4.0641 35 1 9.6314 -1.0992 3.8653 36 1 8.0768 -0.4137 4.5830 37 1 7.8550 -2.4640 6.0601 38 1 9.4095 -3.1494 5.3424 39 1 1.6134 -1.7803 1.1085 40 1 1.6828 -0.2843 2.0719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400789439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:45 Heat of formation + Delta-G solvation = -17.090676 kcal Electronic energy + Delta-G solvation = -18817.997525 eV Core-core repulsion = 15952.849557 eV Total energy + Delta-G solvation = -2865.147968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.67071 -36.49240 -35.79132 -32.82752 -31.88932 -29.23359 -27.71598 -27.07364 -25.24463 -24.24689 -22.48546 -21.03275 -20.49578 -19.11981 -16.55146 -16.41637 -16.14091 -15.65773 -15.12664 -15.06002 -14.57301 -14.41454 -13.89733 -13.76436 -13.25670 -13.03648 -12.76737 -12.63685 -12.37804 -12.05975 -11.81502 -11.59761 -11.32285 -11.07294 -10.91258 -10.85103 -10.56855 -10.39007 -10.10736 -9.65522 -9.47190 -9.14005 -8.83036 -8.64442 -8.39963 -7.92588 -6.65273 -5.98259 -4.03785 2.41384 3.32874 3.41199 3.47389 3.60141 3.62370 3.76725 4.46239 4.71076 4.78812 4.81683 5.01944 5.08772 5.21996 5.24251 5.30318 5.33767 5.43563 5.45784 5.51248 5.56390 5.62813 5.69807 5.89924 6.03898 6.05466 6.27760 6.46713 6.60482 6.67429 6.68596 6.81082 6.88275 7.13299 7.23094 7.45224 7.56938 7.94478 8.46429 8.97528 9.61521 11.09884 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.004317 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.545820 B = 6483.678449 C = 6924.400104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.016 3.984 4 C 0.062 3.938 5 O -0.364 6.364 6 C 0.115 3.885 7 H 0.076 0.924 8 C -0.100 4.100 9 S -0.218 6.218 10 C -0.032 4.032 11 C 0.055 3.945 12 C -0.481 4.481 13 H 0.062 0.938 14 C 0.071 3.929 15 N -0.884 5.884 16 Si 0.889 3.111 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.284 1.284 20 C -0.204 4.204 21 C -0.149 4.149 22 C 0.027 3.973 23 H 0.026 0.974 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.258 0.742 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.996 10.164 -5.189 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.015 4.015 5 O -0.283 6.283 6 C 0.056 3.944 7 H 0.094 0.906 8 C -0.249 4.249 9 S 0.011 5.989 10 C -0.180 4.180 11 C 0.054 3.946 12 C -0.519 4.519 13 H 0.080 0.920 14 C -0.132 4.132 15 N -0.521 5.521 16 Si 0.717 3.283 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.241 4.241 21 C -0.189 4.189 22 C -0.102 4.102 23 H 0.044 0.956 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.166 10.235 -6.228 17.801 hybrid contribution -1.075 -0.941 0.960 1.721 sum -14.241 9.294 -5.268 17.803 Atomic orbital electron populations 1.22376 0.86938 1.02455 1.00520 1.62185 1.08121 1.13739 1.42697 1.22847 0.97204 0.89656 1.01473 1.22626 0.91471 0.96706 0.90720 1.88150 1.69411 1.23016 1.47711 1.21747 0.90613 0.83929 0.98087 0.90589 1.23313 0.99638 1.02206 0.99715 1.87078 0.99868 1.75696 1.36300 1.23084 1.01464 1.00457 0.93039 1.18425 0.86906 0.94905 0.94388 1.20430 1.36181 0.90144 1.05178 0.91964 1.24953 0.94831 0.97824 0.95559 1.70001 1.45826 1.10455 1.25847 0.86571 0.78480 0.80426 0.82819 1.19532 1.21225 1.20964 1.22972 1.01998 0.91988 1.07185 1.22583 1.02885 0.99460 0.93979 1.22829 0.96036 0.99462 0.91912 0.95584 0.91241 0.91110 0.89786 0.94022 0.92256 0.88388 0.89332 0.90585 0.90187 0.93509 0.93194 0.90373 0.91412 0.92064 0.89730 0.89446 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.60 60.06 0.58 0.79 16 2 N -0.54 -5.94 4.99 -242.61 -1.21 -7.15 16 3 C 0.02 0.16 5.66 -3.71 -0.02 0.14 16 4 C 0.06 0.72 7.01 37.21 0.26 0.98 16 5 O -0.36 -5.59 10.07 -35.23 -0.35 -5.94 16 6 C 0.12 1.67 2.85 -26.68 -0.08 1.59 16 7 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 8 C -0.10 -1.60 5.67 37.16 0.21 -1.39 16 9 S -0.22 -4.55 21.08 -107.50 -2.27 -6.82 16 10 C -0.03 -0.73 5.80 37.16 0.22 -0.51 16 11 C 0.06 1.38 1.34 -155.66 -0.21 1.17 16 12 C -0.48 -13.25 8.47 -34.45 -0.29 -13.54 16 13 H 0.06 1.76 7.82 -52.48 -0.41 1.35 16 14 C 0.07 1.95 5.44 -17.82 -0.10 1.85 16 15 N -0.88 -24.93 12.86 55.43 0.71 -24.21 16 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 C -0.20 -4.60 9.95 -26.73 -0.27 -4.87 16 21 C -0.15 -3.54 9.40 -26.73 -0.25 -3.79 16 22 C 0.03 0.32 4.95 -3.72 -0.02 0.30 16 23 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.96 8.14 -51.92 -0.42 1.54 16 33 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 35 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.08 2.13 8.14 -51.93 -0.42 1.70 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -29.58 338.64 -10.16 -39.74 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.15 Total: 0.15 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 0.03 Total: -17.28 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: -0.50 Total: -31.36 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.35 Total: -5.94 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -2.27 Total: -6.82 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.58 -10.16 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400789439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.645 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds