Wall clock time and date at job start Mon Mar 30 2020 05:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47019 * 111.00053 * 2 1 4 4 C 1.53094 * 109.26055 * 182.39507 * 3 2 1 5 5 O 1.43017 * 109.29234 * 303.17654 * 4 3 2 6 6 C 1.43012 * 113.73791 * 58.59672 * 5 4 3 7 7 H 1.09000 * 109.50215 * 61.36209 * 6 5 4 8 8 C 1.53003 * 109.50388 * 181.44129 * 6 5 4 9 9 S 1.81402 * 109.47471 * 299.91523 * 8 6 5 10 10 C 1.81399 * 102.99913 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46721 * 179.97438 * 10 9 8 12 12 C 1.50691 * 115.55474 * 294.73906 * 11 10 9 13 13 H 1.08003 * 119.99938 * 99.76309 * 12 11 10 14 14 C 1.37874 * 120.00307 * 279.48604 * 12 11 10 15 15 N 1.31512 * 119.99989 * 355.06446 * 14 12 11 16 16 Si 1.86807 * 120.00237 * 175.06647 * 14 12 11 17 17 H 1.48498 * 109.46840 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46919 * 119.99872 * 16 14 12 19 19 H 1.48501 * 109.47046 * 239.99657 * 16 14 12 20 20 C 1.53003 * 117.51512 * 80.44747 * 11 10 9 21 21 C 1.52992 * 60.00289 * 107.47762 * 20 11 10 22 22 C 1.47014 * 111.00444 * 123.63576 * 2 1 3 23 23 H 1.09000 * 109.47128 * 296.36148 * 1 2 3 24 24 H 1.08996 * 109.47649 * 56.36156 * 1 2 3 25 25 H 1.09002 * 109.47109 * 176.36682 * 1 2 3 26 26 H 1.09000 * 109.50376 * 302.33489 * 3 2 1 27 27 H 1.09003 * 109.50284 * 62.45555 * 3 2 1 28 28 H 1.08994 * 109.50579 * 63.08816 * 4 3 2 29 29 H 1.08994 * 109.50764 * 183.17588 * 4 3 2 30 30 H 1.09000 * 109.47102 * 179.91521 * 8 6 5 31 31 H 1.08996 * 109.47052 * 59.91933 * 8 6 5 32 32 H 1.09000 * 109.47297 * 60.00409 * 10 9 8 33 33 H 1.08994 * 109.47421 * 300.00132 * 10 9 8 34 34 H 0.97004 * 120.00394 * 185.00446 * 15 14 12 35 35 H 1.09006 * 117.49729 * 214.96765 * 20 11 10 36 36 H 1.09006 * 117.50112 * 359.97438 * 20 11 10 37 37 H 1.09000 * 117.49759 * 252.51277 * 21 20 11 38 38 H 1.08999 * 117.50536 * 107.48994 * 21 20 11 39 39 H 1.08998 * 109.49978 * 57.67181 * 22 2 1 40 40 H 1.08994 * 109.50378 * 297.54412 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0604 5 8 4.0182 0.5571 1.0396 6 6 3.5249 -0.7848 1.0708 7 1 3.8385 -1.3089 0.1679 8 6 4.0826 -1.5057 2.2997 9 16 5.8945 -1.5322 2.2149 10 6 6.3611 -2.4117 3.7312 11 6 7.8853 -2.5196 3.8095 12 6 8.5333 -3.3603 2.7400 13 1 8.9883 -2.8867 1.8826 14 6 8.5503 -4.7338 2.8586 15 7 8.0885 -5.3054 3.9493 16 14 9.2293 -5.7830 1.4702 17 1 9.6837 -4.9044 0.3626 18 1 10.3767 -6.5827 1.9696 19 1 8.1679 -6.6960 0.9750 20 6 8.6558 -1.2960 4.3099 21 6 8.5220 -2.5326 5.2008 22 6 1.9959 -0.7602 1.1427 23 1 -0.3633 0.4563 0.9208 24 1 -0.3634 0.5692 -0.8555 25 1 -0.3633 -1.0256 -0.0651 26 1 1.6132 1.9092 -0.8681 27 1 1.6826 1.8826 0.9110 28 1 3.8384 0.8645 -0.9965 29 1 3.9220 2.3399 -0.0037 30 1 3.7051 -2.5280 2.3237 31 1 3.7687 -0.9813 3.2021 32 1 5.9266 -3.4112 3.7199 33 1 5.9903 -1.8641 4.5976 34 1 8.1665 -6.2654 4.0641 35 1 9.6314 -1.0992 3.8653 36 1 8.0768 -0.4137 4.5830 37 1 7.8550 -2.4640 6.0601 38 1 9.4095 -3.1494 5.3424 39 1 1.6134 -1.7803 1.1085 40 1 1.6828 -0.2843 2.0719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400789439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:44 Heat of formation + Delta-G solvation = -34.677628 kcal Electronic energy + Delta-G solvation = -18818.760152 eV Core-core repulsion = 15952.849557 eV Total energy + Delta-G solvation = -2865.910595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.63132 -38.39254 -36.70210 -33.98348 -33.90473 -30.13374 -29.42999 -28.16541 -27.29923 -25.07493 -23.53176 -22.89932 -21.45794 -21.04402 -18.19737 -17.60983 -17.21724 -16.99420 -16.59703 -16.15571 -15.89793 -15.70763 -15.60620 -15.01643 -14.83039 -14.36060 -14.18470 -13.71884 -13.61276 -13.24947 -13.10995 -12.91979 -12.82790 -12.76497 -12.37411 -12.34247 -12.17920 -11.97835 -11.58822 -11.34317 -10.99065 -10.78338 -10.51447 -10.41669 -9.81420 -9.44655 -8.32028 -8.07829 -6.18442 0.88983 1.40221 1.43855 1.54923 1.99257 2.45182 2.73740 2.81987 3.19908 3.56114 3.76672 3.87810 3.95885 4.00063 4.18214 4.22531 4.27839 4.40541 4.43334 4.54331 4.57966 4.62408 4.63009 4.64737 4.71897 4.78967 4.89008 4.96575 4.97358 4.99887 5.01912 5.24657 5.57965 5.65411 5.81216 5.86069 5.94923 6.21193 6.41608 6.84783 7.48842 8.99669 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.004317 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.545820 B = 6483.678449 C = 6924.400104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.557 5.557 3 C 0.021 3.979 4 C 0.055 3.945 5 O -0.391 6.391 6 C 0.118 3.882 7 H 0.061 0.939 8 C -0.083 4.083 9 S -0.258 6.258 10 C -0.020 4.020 11 C 0.028 3.972 12 C -0.495 4.495 13 H 0.045 0.955 14 C 0.030 3.970 15 N -0.907 5.907 16 Si 0.944 3.056 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.184 4.184 21 C -0.150 4.150 22 C 0.036 3.964 23 H 0.030 0.970 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.260 0.740 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.569 10.999 -5.789 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.282 5.282 3 C -0.107 4.107 4 C -0.021 4.021 5 O -0.311 6.311 6 C 0.059 3.941 7 H 0.079 0.921 8 C -0.232 4.232 9 S -0.029 6.029 10 C -0.168 4.168 11 C 0.027 3.973 12 C -0.532 4.532 13 H 0.063 0.937 14 C -0.170 4.170 15 N -0.545 5.545 16 Si 0.770 3.230 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.221 4.221 21 C -0.190 4.190 22 C -0.094 4.094 23 H 0.048 0.952 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.125 0.875 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.736 11.078 -6.829 19.659 hybrid contribution -0.626 -1.128 1.096 1.693 sum -15.362 9.949 -5.733 19.179 Atomic orbital electron populations 1.22436 0.85189 1.03213 1.01363 1.62196 1.09714 1.14118 1.42143 1.22836 0.95857 0.89519 1.02493 1.22850 0.92903 0.96943 0.89429 1.88100 1.70411 1.23348 1.49192 1.21664 0.92433 0.83584 0.96388 0.92054 1.23362 0.95237 1.03394 1.01202 1.87111 1.04984 1.75063 1.35786 1.22796 0.99966 0.99516 0.94560 1.18544 0.88265 0.96221 0.94265 1.20571 1.36384 0.90888 1.05405 0.93665 1.25553 0.95286 0.98756 0.97416 1.70079 1.46672 1.10654 1.27114 0.85714 0.78043 0.78889 0.80305 1.19647 1.20570 1.20598 1.22949 1.01673 0.91949 1.05563 1.22501 1.02294 0.99915 0.94241 1.22689 0.93762 1.00447 0.92519 0.95182 0.89817 0.90563 0.87532 0.94027 0.92755 0.86729 0.88291 0.89595 0.92678 0.92000 0.93125 0.90628 0.89322 0.90549 0.91822 0.88374 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.60 127.69 1.23 1.58 16 2 N -0.56 -10.86 4.99 -921.48 -4.59 -15.46 16 3 C 0.02 0.37 5.66 86.31 0.49 0.86 16 4 C 0.06 1.20 7.01 72.01 0.50 1.70 16 5 O -0.39 -11.60 10.07 -148.98 -1.50 -13.10 16 6 C 0.12 3.30 2.85 30.63 0.09 3.38 16 7 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 8 C -0.08 -2.58 5.67 71.98 0.41 -2.18 16 9 S -0.26 -10.74 21.08 -56.49 -1.19 -11.93 16 10 C -0.02 -0.91 5.80 71.98 0.42 -0.49 16 11 C 0.03 1.42 1.34 -52.93 -0.07 1.35 16 12 C -0.49 -27.59 8.47 25.60 0.22 -27.37 16 13 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 14 C 0.03 1.66 5.44 84.65 0.46 2.12 16 15 N -0.91 -51.58 12.86 21.45 0.28 -51.31 16 16 Si 0.94 44.32 29.54 68.60 2.03 46.35 16 17 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 C -0.18 -8.18 9.95 30.59 0.30 -7.87 16 21 C -0.15 -7.08 9.40 30.59 0.29 -6.79 16 22 C 0.04 0.77 4.95 86.31 0.43 1.20 16 23 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.05 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.06 2.56 8.09 -2.39 -0.02 2.54 16 34 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 35 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 36 H 0.09 3.55 8.14 -2.38 -0.02 3.53 16 37 H 0.08 3.32 8.14 -2.39 -0.02 3.31 16 38 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -62.85 338.64 0.75 -62.10 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.98 Total: 15.84 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 4.76 Total: -32.50 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -4.32 Total: -66.76 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -1.50 Total: -13.10 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -10.74 SS G_CDS: -1.19 Total: -11.93 kcal Total: -62.85 0.75 -62.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400789439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.421 kcal (2) G-P(sol) polarization free energy of solvation -62.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds