Wall clock time and date at job start Mon Mar 30 2020 05:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47015 * 111.00247 * 2 1 4 4 C 1.53094 * 109.25971 * 177.60878 * 3 2 1 5 5 O 1.43014 * 109.25862 * 56.85106 * 4 3 2 6 6 C 1.43007 * 113.73916 * 301.33191 * 5 4 3 7 7 H 1.09003 * 109.50303 * 298.68596 * 6 5 4 8 8 C 1.53004 * 109.50676 * 178.60330 * 6 5 4 9 9 S 1.81400 * 109.47027 * 64.99930 * 8 6 5 10 10 C 1.81401 * 102.99888 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46872 * 179.97438 * 10 9 8 12 12 C 1.50699 * 115.55051 * 65.33486 * 11 10 9 13 13 H 1.08000 * 119.99918 * 265.65577 * 12 11 10 14 14 C 1.37881 * 119.99866 * 85.65123 * 12 11 10 15 15 N 1.31511 * 119.99957 * 353.69568 * 14 12 11 16 16 Si 1.86797 * 119.99810 * 173.69465 * 14 12 11 17 17 H 1.48500 * 109.47517 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47410 * 120.00044 * 16 14 12 19 19 H 1.48504 * 109.47300 * 240.00153 * 16 14 12 20 20 C 1.53001 * 117.50212 * 279.66416 * 11 10 9 21 21 C 1.53004 * 117.49772 * 211.00052 * 11 10 9 22 22 C 1.47016 * 111.00043 * 236.37029 * 2 1 3 23 23 H 1.09001 * 109.47437 * 63.95212 * 1 2 3 24 24 H 1.08999 * 109.47024 * 183.95214 * 1 2 3 25 25 H 1.09000 * 109.46740 * 303.94806 * 1 2 3 26 26 H 1.08999 * 109.50479 * 57.67290 * 3 2 1 27 27 H 1.08996 * 109.50742 * 297.54848 * 3 2 1 28 28 H 1.08991 * 109.51108 * 296.91361 * 4 3 2 29 29 H 1.09007 * 109.53835 * 176.80743 * 4 3 2 30 30 H 1.08998 * 109.47273 * 304.99550 * 8 6 5 31 31 H 1.09001 * 109.47031 * 184.99623 * 8 6 5 32 32 H 1.09002 * 109.47211 * 299.99813 * 10 9 8 33 33 H 1.09005 * 109.47009 * 60.00007 * 10 9 8 34 34 H 0.97008 * 119.99886 * 174.97844 * 15 14 12 35 35 H 1.08999 * 117.49606 * 359.97438 * 20 11 10 36 36 H 1.08998 * 117.50011 * 145.02277 * 20 11 10 37 37 H 1.09001 * 117.50061 * 214.97855 * 21 11 10 38 38 H 1.08996 * 117.49788 * 0.02562 * 21 11 10 39 39 H 1.08997 * 109.50586 * 62.45320 * 22 2 1 40 40 H 1.09001 * 109.50536 * 302.32785 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0175 0.5574 -1.0404 6 6 3.5249 -0.7848 -1.0711 7 1 3.8392 -1.3085 -0.1683 8 6 4.0825 -1.5056 -2.3002 9 16 5.8834 -1.6592 -2.1458 10 6 6.3511 -2.5247 -3.6699 11 6 7.8666 -2.7339 -3.6929 12 6 8.4127 -3.6486 -2.6270 13 1 8.7834 -3.2366 -1.6999 14 6 8.4392 -5.0113 -2.8352 15 7 7.8764 -5.5237 -3.9077 16 14 9.2744 -6.1297 -1.5938 17 1 9.8256 -5.3124 -0.4833 18 1 8.2844 -7.0954 -1.0529 19 1 10.3767 -6.8707 -2.2581 20 6 8.7367 -1.5510 -4.1223 21 6 8.5570 -2.7489 -5.0582 22 6 1.9959 -0.7601 -1.1428 23 1 -0.3634 0.4513 -0.9233 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3633 0.5739 0.8525 26 1 1.6134 1.9092 0.8682 27 1 1.6828 1.8826 -0.9109 28 1 3.8386 0.8644 0.9963 29 1 3.9228 2.3397 0.0034 30 1 3.8420 -0.9342 -3.1967 31 1 3.6380 -2.4983 -2.3719 32 1 5.8498 -3.4919 -3.7069 33 1 6.0539 -1.9281 -4.5324 34 1 7.9576 -6.4727 -4.0917 35 1 8.2294 -0.6238 -4.3888 36 1 9.7043 -1.4345 -3.6341 37 1 9.4065 -3.4200 -5.1853 38 1 7.9317 -2.6093 -5.9400 39 1 1.6827 -0.2841 -2.0720 40 1 1.6133 -1.7803 -1.1088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400789441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:48 Heat of formation + Delta-G solvation = -17.628589 kcal Electronic energy + Delta-G solvation = -18787.867543 eV Core-core repulsion = 15922.696250 eV Total energy + Delta-G solvation = -2865.171293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67343 -36.50243 -35.79331 -32.82719 -31.88592 -29.23406 -27.71342 -27.06971 -25.25107 -24.24841 -22.48688 -21.05414 -20.49768 -19.12394 -16.54287 -16.41145 -16.14467 -15.66769 -15.13423 -15.06142 -14.57502 -14.40595 -13.89859 -13.77736 -13.25693 -13.03851 -12.77936 -12.62789 -12.38451 -12.05894 -11.77935 -11.60538 -11.32373 -11.09408 -10.94810 -10.82429 -10.57295 -10.39872 -10.12510 -9.65763 -9.55939 -9.14060 -8.75034 -8.64228 -8.39497 -7.94670 -6.65906 -6.00194 -4.04792 2.41759 3.32641 3.41114 3.46881 3.59984 3.62027 3.75853 4.46448 4.71115 4.78883 4.82372 5.01780 5.09121 5.22500 5.24518 5.29268 5.33981 5.44045 5.44930 5.51447 5.56863 5.62587 5.69260 5.89362 6.03938 6.06510 6.28396 6.46338 6.59774 6.67660 6.68825 6.80241 6.87080 7.11519 7.22567 7.46268 7.54160 7.93508 8.45715 8.97548 9.61099 11.09034 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.025933 B = 0.004202 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.427705 B = 6662.313246 C = 7073.523064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.016 3.984 4 C 0.062 3.938 5 O -0.366 6.366 6 C 0.115 3.885 7 H 0.077 0.923 8 C -0.099 4.099 9 S -0.223 6.223 10 C -0.031 4.031 11 C 0.056 3.944 12 C -0.481 4.481 13 H 0.063 0.937 14 C 0.071 3.929 15 N -0.883 5.883 16 Si 0.888 3.112 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.204 4.204 21 C -0.150 4.150 22 C 0.027 3.973 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.258 0.742 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.434 10.783 4.925 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.015 4.015 5 O -0.285 6.285 6 C 0.056 3.944 7 H 0.095 0.905 8 C -0.248 4.248 9 S 0.006 5.994 10 C -0.180 4.180 11 C 0.054 3.946 12 C -0.519 4.519 13 H 0.081 0.919 14 C -0.131 4.131 15 N -0.520 5.520 16 Si 0.715 3.285 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.242 4.242 21 C -0.190 4.190 22 C -0.102 4.102 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.615 10.789 5.996 17.649 hybrid contribution -0.972 -0.879 -1.107 1.715 sum -13.588 9.910 4.890 17.514 Atomic orbital electron populations 1.22378 0.86927 1.02487 1.00502 1.62189 1.08129 1.13712 1.42699 1.22843 0.97185 0.89683 1.01471 1.22627 0.91500 0.96672 0.90695 1.88128 1.69605 1.23069 1.47679 1.21756 0.90615 0.83826 0.98163 0.90517 1.23299 0.99538 1.02165 0.99753 1.87034 1.01430 1.76477 1.34462 1.23104 1.01825 1.00250 0.92771 1.18438 0.86281 0.94926 0.94938 1.20450 1.40392 0.90034 1.01052 0.91899 1.24942 0.94740 0.97854 0.95612 1.70028 1.42379 1.12675 1.26915 0.86600 0.79295 0.80783 0.81785 1.19570 1.21073 1.21108 1.23013 1.02183 0.92373 1.06587 1.22578 1.03212 0.99712 0.93459 1.22833 0.96023 0.99491 0.91895 0.95583 0.91089 0.91244 0.89780 0.94031 0.92227 0.88400 0.90504 0.89302 0.90001 0.93579 0.93215 0.91397 0.90312 0.89848 0.91965 0.93821 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.61 60.06 0.58 0.79 16 2 N -0.54 -5.95 4.99 -242.60 -1.21 -7.16 16 3 C 0.02 0.16 5.66 -3.71 -0.02 0.14 16 4 C 0.06 0.72 7.01 37.21 0.26 0.98 16 5 O -0.37 -5.59 10.22 -35.23 -0.36 -5.95 16 6 C 0.12 1.67 2.80 -26.68 -0.07 1.60 16 7 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 8 C -0.10 -1.59 5.64 37.16 0.21 -1.38 16 9 S -0.22 -4.64 21.21 -107.50 -2.28 -6.92 16 10 C -0.03 -0.71 5.80 37.16 0.22 -0.49 16 11 C 0.06 1.39 1.34 -155.66 -0.21 1.18 16 12 C -0.48 -13.23 8.49 -34.44 -0.29 -13.52 16 13 H 0.06 1.78 7.82 -52.49 -0.41 1.37 16 14 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 15 N -0.88 -24.85 12.90 55.43 0.71 -24.14 16 16 Si 0.89 21.37 29.55 -169.99 -5.02 16.35 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C -0.20 -4.59 9.96 -26.69 -0.27 -4.86 16 21 C -0.15 -3.54 9.40 -26.69 -0.25 -3.79 16 22 C 0.03 0.32 4.95 -3.71 -0.02 0.30 16 23 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.34 8.14 -51.92 -0.42 0.91 16 32 H 0.08 2.01 8.14 -51.92 -0.42 1.59 16 33 H 0.05 0.97 8.09 -51.92 -0.42 0.55 16 34 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -29.52 338.86 -10.17 -39.69 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.15 Total: 0.23 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 0.03 Total: -17.20 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: -0.49 Total: -31.30 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.36 Total: -5.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -2.28 Total: -6.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.52 -10.17 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400789441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.056 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds