Wall clock time and date at job start Mon Mar 30 2020 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47015 * 111.00247 * 2 1 4 4 C 1.53094 * 109.25971 * 177.60878 * 3 2 1 5 5 O 1.43014 * 109.25862 * 56.85106 * 4 3 2 6 6 C 1.43007 * 113.73916 * 301.33191 * 5 4 3 7 7 H 1.09003 * 109.50303 * 298.68596 * 6 5 4 8 8 C 1.53004 * 109.50676 * 178.60330 * 6 5 4 9 9 S 1.81400 * 109.47027 * 64.99930 * 8 6 5 10 10 C 1.81401 * 102.99888 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46872 * 179.97438 * 10 9 8 12 12 C 1.50699 * 115.55051 * 65.33486 * 11 10 9 13 13 H 1.08000 * 119.99918 * 265.65577 * 12 11 10 14 14 C 1.37881 * 119.99866 * 85.65123 * 12 11 10 15 15 N 1.31511 * 119.99957 * 353.69568 * 14 12 11 16 16 Si 1.86797 * 119.99810 * 173.69465 * 14 12 11 17 17 H 1.48500 * 109.47517 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47410 * 120.00044 * 16 14 12 19 19 H 1.48504 * 109.47300 * 240.00153 * 16 14 12 20 20 C 1.53001 * 117.50212 * 279.66416 * 11 10 9 21 21 C 1.53004 * 117.49772 * 211.00052 * 11 10 9 22 22 C 1.47016 * 111.00043 * 236.37029 * 2 1 3 23 23 H 1.09001 * 109.47437 * 63.95212 * 1 2 3 24 24 H 1.08999 * 109.47024 * 183.95214 * 1 2 3 25 25 H 1.09000 * 109.46740 * 303.94806 * 1 2 3 26 26 H 1.08999 * 109.50479 * 57.67290 * 3 2 1 27 27 H 1.08996 * 109.50742 * 297.54848 * 3 2 1 28 28 H 1.08991 * 109.51108 * 296.91361 * 4 3 2 29 29 H 1.09007 * 109.53835 * 176.80743 * 4 3 2 30 30 H 1.08998 * 109.47273 * 304.99550 * 8 6 5 31 31 H 1.09001 * 109.47031 * 184.99623 * 8 6 5 32 32 H 1.09002 * 109.47211 * 299.99813 * 10 9 8 33 33 H 1.09005 * 109.47009 * 60.00007 * 10 9 8 34 34 H 0.97008 * 119.99886 * 174.97844 * 15 14 12 35 35 H 1.08999 * 117.49606 * 359.97438 * 20 11 10 36 36 H 1.08998 * 117.50011 * 145.02277 * 20 11 10 37 37 H 1.09001 * 117.50061 * 214.97855 * 21 11 10 38 38 H 1.08996 * 117.49788 * 0.02562 * 21 11 10 39 39 H 1.08997 * 109.50586 * 62.45320 * 22 2 1 40 40 H 1.09001 * 109.50536 * 302.32785 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0175 0.5574 -1.0404 6 6 3.5249 -0.7848 -1.0711 7 1 3.8392 -1.3085 -0.1683 8 6 4.0825 -1.5056 -2.3002 9 16 5.8834 -1.6592 -2.1458 10 6 6.3511 -2.5247 -3.6699 11 6 7.8666 -2.7339 -3.6929 12 6 8.4127 -3.6486 -2.6270 13 1 8.7834 -3.2366 -1.6999 14 6 8.4392 -5.0113 -2.8352 15 7 7.8764 -5.5237 -3.9077 16 14 9.2744 -6.1297 -1.5938 17 1 9.8256 -5.3124 -0.4833 18 1 8.2844 -7.0954 -1.0529 19 1 10.3767 -6.8707 -2.2581 20 6 8.7367 -1.5510 -4.1223 21 6 8.5570 -2.7489 -5.0582 22 6 1.9959 -0.7601 -1.1428 23 1 -0.3634 0.4513 -0.9233 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3633 0.5739 0.8525 26 1 1.6134 1.9092 0.8682 27 1 1.6828 1.8826 -0.9109 28 1 3.8386 0.8644 0.9963 29 1 3.9228 2.3397 0.0034 30 1 3.8420 -0.9342 -3.1967 31 1 3.6380 -2.4983 -2.3719 32 1 5.8498 -3.4919 -3.7069 33 1 6.0539 -1.9281 -4.5324 34 1 7.9576 -6.4727 -4.0917 35 1 8.2294 -0.6238 -4.3888 36 1 9.7043 -1.4345 -3.6341 37 1 9.4065 -3.4200 -5.1853 38 1 7.9317 -2.6093 -5.9400 39 1 1.6827 -0.2841 -2.0720 40 1 1.6133 -1.7803 -1.1088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400789441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:47 Heat of formation + Delta-G solvation = -35.176014 kcal Electronic energy + Delta-G solvation = -18788.628456 eV Core-core repulsion = 15922.696250 eV Total energy + Delta-G solvation = -2865.932207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.63539 -38.39741 -36.70479 -33.97609 -33.90699 -30.13258 -29.42723 -28.16461 -27.30351 -25.07707 -23.53635 -22.91240 -21.46185 -21.04321 -18.18370 -17.60471 -17.21799 -17.02178 -16.59763 -16.15696 -15.90273 -15.70697 -15.60484 -15.01486 -14.82895 -14.36403 -14.19491 -13.72653 -13.57976 -13.23990 -13.11894 -12.97658 -12.79872 -12.77004 -12.37565 -12.34491 -12.18113 -11.98469 -11.60828 -11.41826 -10.94401 -10.71210 -10.54140 -10.41719 -9.82422 -9.44560 -8.32994 -8.09249 -6.19045 0.89125 1.40469 1.43967 1.54866 1.98605 2.45697 2.72407 2.81982 3.19439 3.55506 3.76575 3.88601 3.95626 4.00260 4.18618 4.22750 4.27266 4.40311 4.44234 4.53626 4.58163 4.62221 4.62787 4.64692 4.71474 4.78964 4.88928 4.96009 4.97398 4.99887 5.01455 5.23774 5.60539 5.63741 5.79898 5.86031 5.95005 6.20512 6.41354 6.85069 7.48769 8.99206 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.025933 B = 0.004202 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.427705 B = 6662.313246 C = 7073.523064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.557 5.557 3 C 0.021 3.979 4 C 0.056 3.944 5 O -0.392 6.392 6 C 0.119 3.881 7 H 0.061 0.939 8 C -0.082 4.082 9 S -0.262 6.262 10 C -0.019 4.019 11 C 0.028 3.972 12 C -0.495 4.495 13 H 0.046 0.954 14 C 0.030 3.970 15 N -0.906 5.906 16 Si 0.943 3.057 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.279 1.279 20 C -0.184 4.184 21 C -0.150 4.150 22 C 0.036 3.964 23 H 0.030 0.970 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.259 0.741 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.839 11.696 5.445 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.282 5.282 3 C -0.107 4.107 4 C -0.021 4.021 5 O -0.312 6.312 6 C 0.060 3.940 7 H 0.079 0.921 8 C -0.231 4.231 9 S -0.034 6.034 10 C -0.168 4.168 11 C 0.027 3.973 12 C -0.532 4.532 13 H 0.064 0.936 14 C -0.170 4.170 15 N -0.544 5.544 16 Si 0.769 3.231 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.205 1.205 20 C -0.221 4.221 21 C -0.190 4.190 22 C -0.094 4.094 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.125 0.875 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.017 11.710 6.519 19.393 hybrid contribution -0.582 -1.089 -1.213 1.730 sum -14.598 10.621 5.306 18.817 Atomic orbital electron populations 1.22438 0.85182 1.03222 1.01363 1.62200 1.09725 1.14136 1.42137 1.22837 0.95858 0.89507 1.02518 1.22857 0.92917 0.96943 0.89388 1.88079 1.70585 1.23342 1.49162 1.21658 0.92424 0.83519 0.96410 0.92100 1.23342 0.95258 1.03285 1.01179 1.87066 1.06431 1.75876 1.33994 1.22812 1.00274 0.99394 0.94271 1.18553 0.87726 0.96123 0.94898 1.20590 1.40570 0.90909 1.01170 0.93614 1.25549 0.95330 0.98967 0.97164 1.70104 1.43173 1.12922 1.28200 0.85732 0.78489 0.79036 0.79793 1.19637 1.20780 1.20451 1.22987 1.01638 0.92464 1.05047 1.22507 1.02673 1.00026 0.93772 1.22691 0.93754 1.00440 0.92546 0.95153 0.90593 0.89800 0.87517 0.93990 0.92760 0.86650 0.89593 0.88264 0.92552 0.92085 0.93149 0.89339 0.90525 0.91828 0.90460 0.93591 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.61 127.69 1.23 1.59 16 2 N -0.56 -10.93 4.99 -921.45 -4.59 -15.52 16 3 C 0.02 0.36 5.66 86.31 0.49 0.85 16 4 C 0.06 1.20 7.01 72.01 0.50 1.70 16 5 O -0.39 -11.58 10.22 -148.98 -1.52 -13.11 16 6 C 0.12 3.33 2.80 30.63 0.09 3.41 16 7 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 8 C -0.08 -2.56 5.64 71.98 0.41 -2.15 16 9 S -0.26 -10.93 21.21 -56.49 -1.20 -12.13 16 10 C -0.02 -0.87 5.80 71.98 0.42 -0.45 16 11 C 0.03 1.42 1.34 -52.93 -0.07 1.35 16 12 C -0.49 -27.54 8.49 25.60 0.22 -27.32 16 13 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 14 C 0.03 1.66 5.39 84.66 0.46 2.12 16 15 N -0.91 -51.44 12.90 21.45 0.28 -51.17 16 16 Si 0.94 44.18 29.55 68.60 2.03 46.21 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 C -0.18 -8.14 9.96 30.62 0.30 -7.84 16 21 C -0.15 -7.06 9.40 30.62 0.29 -6.77 16 22 C 0.04 0.77 4.95 86.31 0.43 1.20 16 23 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.06 2.53 8.09 -2.39 -0.02 2.51 16 34 H 0.26 14.06 8.32 -92.70 -0.77 13.29 16 35 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -62.71 338.86 0.72 -61.99 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.98 Total: 16.03 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 4.75 Total: -32.32 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -4.32 Total: -66.69 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.52 Total: -13.11 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -10.93 SS G_CDS: -1.20 Total: -12.13 kcal Total: -62.71 0.72 -61.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400789441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.818 kcal (2) G-P(sol) polarization free energy of solvation -62.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds