Wall clock time and date at job start Mon Mar 30 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00408 * 2 1 4 4 H 1.48495 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46665 * 299.99619 * 3 2 1 6 6 H 1.48497 * 109.47188 * 59.99094 * 3 2 1 7 7 C 1.37880 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46859 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47282 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47282 * 179.97438 * 11 10 9 13 13 N 1.46910 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.46836 * 110.99828 * 170.00321 * 13 12 11 15 15 C 1.53035 * 109.52425 * 174.15887 * 14 13 12 16 16 H 1.08994 * 109.50576 * 299.19860 * 15 14 13 17 17 C 1.50700 * 109.50634 * 179.11741 * 15 14 13 18 18 O 1.20822 * 119.99958 * 359.97438 * 17 15 14 19 19 O 1.34234 * 120.00068 * 180.02562 * 17 15 14 20 20 C 1.53123 * 109.27690 * 59.17735 * 15 14 13 21 21 C 1.53122 * 109.16140 * 302.34596 * 20 15 14 22 22 H 1.09000 * 109.50291 * 297.71699 * 21 20 15 23 23 O 1.42900 * 109.53519 * 177.61311 * 21 20 15 24 24 C 1.46843 * 110.99816 * 45.78934 * 13 12 11 25 25 H 0.97007 * 119.99654 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46864 * 60.00174 * 9 7 2 27 27 H 1.08997 * 109.47254 * 299.99614 * 9 7 2 28 28 H 1.09004 * 109.47422 * 60.00249 * 10 9 7 29 29 H 1.09004 * 109.47445 * 300.00151 * 10 9 7 30 30 H 1.09004 * 109.46664 * 59.99815 * 11 10 9 31 31 H 1.08998 * 109.47206 * 300.00817 * 11 10 9 32 32 H 1.09001 * 109.47008 * 60.00577 * 12 11 10 33 33 H 1.08994 * 109.47437 * 299.99620 * 12 11 10 34 34 H 1.08998 * 109.46841 * 54.13903 * 14 13 12 35 35 H 1.09008 * 109.46424 * 294.17436 * 14 13 12 36 36 H 0.96698 * 117.00153 * 179.97438 * 19 17 15 37 37 H 1.08997 * 109.52619 * 62.25265 * 20 15 14 38 38 H 1.09004 * 109.52496 * 182.44238 * 20 15 14 39 39 H 0.96696 * 113.99568 * 180.17526 * 23 21 20 40 40 H 1.09002 * 109.46892 * 305.85236 * 24 13 12 41 41 H 1.09003 * 109.46236 * 65.82640 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0005 13 7 1.7397 -7.4223 0.0005 14 6 2.6457 -8.5530 -0.2380 15 6 1.8750 -9.8665 -0.0871 16 1 1.4791 -9.9418 0.9256 17 6 2.8000 -11.0260 -0.3533 18 8 3.9572 -10.8233 -0.6354 19 8 2.3380 -12.2841 -0.2780 20 6 0.7197 -9.8931 -1.0917 21 6 -0.1820 -8.6788 -0.8530 22 1 -0.6108 -8.7351 0.1476 23 8 -1.2321 -8.6655 -1.8221 24 6 0.6484 -7.3997 -0.9817 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8906 29 1 2.8718 -3.6044 -0.8895 30 1 0.8531 -5.0451 -0.8886 31 1 0.8537 -5.0446 0.8913 32 1 3.1015 -6.0923 0.8901 33 1 3.1003 -6.0924 -0.8899 34 1 3.4603 -8.5247 0.4855 35 1 3.0535 -8.4850 -1.2466 36 1 2.9687 -12.9949 -0.4574 37 1 1.1179 -9.8573 -2.1058 38 1 0.1419 -10.8077 -0.9584 39 1 -1.8412 -7.9200 -1.7317 40 1 0.0122 -6.5339 -0.7981 41 1 1.0656 -7.3372 -1.9868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401866766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:17 Heat of formation + Delta-G solvation = -161.044138 kcal Electronic energy + Delta-G solvation = -20920.238123 eV Core-core repulsion = 17606.094994 eV Total energy + Delta-G solvation = -3314.143129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.94707 -39.27873 -36.73727 -36.44423 -35.01386 -33.43122 -31.83108 -30.12293 -28.48489 -25.59533 -25.05892 -23.26273 -22.08249 -20.87878 -20.08446 -19.93196 -18.43816 -17.66694 -16.72741 -16.23685 -16.15226 -15.61275 -15.59455 -14.81321 -14.47553 -14.30829 -14.09975 -13.74783 -13.38813 -12.99493 -12.63828 -12.50895 -12.34591 -11.89907 -11.72790 -11.63130 -11.40822 -11.22982 -11.05449 -11.01837 -10.67546 -10.57689 -10.47530 -10.28973 -10.11741 -9.64510 -9.28885 -9.02388 -8.43790 -8.34530 -5.99754 -4.01758 1.82984 2.56628 3.30979 3.38468 3.42815 3.72201 3.92647 4.36938 4.46496 4.50579 4.70094 4.73503 4.98553 5.01933 5.17909 5.29233 5.33661 5.36386 5.43135 5.53227 5.56137 5.69109 5.81756 5.82177 5.86583 6.09464 6.13109 6.20391 6.42291 6.74884 6.89541 6.91086 6.94273 7.17344 7.44360 7.53138 7.68692 7.83544 8.00956 8.44161 9.05844 9.62398 11.11649 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.003039 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.974425 B = 9212.795058 C = 9904.257864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.121 4.121 12 C 0.058 3.942 13 N -0.534 5.534 14 C 0.067 3.933 15 C -0.074 4.074 16 H 0.122 0.878 17 C 0.488 3.512 18 O -0.512 6.512 19 O -0.514 6.514 20 C -0.105 4.105 21 C 0.110 3.890 22 H 0.070 0.930 23 O -0.567 6.567 24 C 0.011 3.989 25 H 0.259 0.741 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.410 0.590 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.385 0.615 40 H 0.095 0.905 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 -23.370 -0.539 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.159 4.159 12 C -0.069 4.069 13 N -0.259 5.259 14 C -0.061 4.061 15 C -0.093 4.093 16 H 0.140 0.860 17 C 0.330 3.670 18 O -0.400 6.400 19 O -0.326 6.326 20 C -0.142 4.142 21 C 0.051 3.949 22 H 0.088 0.912 23 O -0.372 6.372 24 C -0.117 4.117 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.269 0.731 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.233 0.767 40 H 0.113 0.887 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.836 -23.484 -0.284 23.500 hybrid contribution 1.014 1.124 -0.716 1.674 sum 1.850 -22.360 -1.000 22.459 Atomic orbital electron populations 1.69974 1.06050 1.26434 1.51123 1.25032 0.94851 0.99261 0.95396 0.86555 0.80144 0.83857 0.77570 1.19753 1.21035 1.21009 1.21323 0.93077 0.91180 1.50217 0.92702 1.19088 0.93999 0.91374 0.97092 1.21604 0.99130 0.93776 1.00261 1.21837 0.98013 0.94018 1.02001 1.22259 0.96289 0.87306 1.01026 1.61897 1.11539 1.03289 1.49217 1.21927 0.94401 0.88152 1.01626 1.20926 0.94779 0.90266 1.03376 0.86038 1.23295 0.87455 0.83770 0.72483 1.90744 1.19551 1.85730 1.43929 1.84537 1.47973 1.17010 1.83078 1.21466 0.94805 0.99196 0.98764 1.21680 0.87499 0.93595 0.92115 0.91224 1.86456 1.41794 1.52464 1.56528 1.23035 0.94897 0.99249 0.94530 0.93095 0.96792 0.96607 0.93287 0.93586 0.92295 0.91494 0.90346 0.94701 0.89412 0.93616 0.73077 0.90867 0.89628 0.76727 0.88676 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.34 16 11 C -0.12 -1.95 4.46 -26.73 -0.12 -2.07 16 12 C 0.06 0.79 5.27 -3.82 -0.02 0.77 16 13 N -0.53 -6.39 4.81 -234.67 -1.13 -7.51 16 14 C 0.07 0.74 4.00 -3.84 -0.02 0.72 16 15 C -0.07 -0.67 2.79 -91.69 -0.26 -0.93 16 16 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 17 C 0.49 4.62 7.63 36.01 0.27 4.89 16 18 O -0.51 -6.42 16.74 -18.75 -0.31 -6.73 16 19 O -0.51 -3.52 13.36 -39.27 -0.52 -4.04 16 20 C -0.10 -0.96 4.87 -26.60 -0.13 -1.09 16 21 C 0.11 1.07 3.63 -26.65 -0.10 0.98 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 O -0.57 -5.65 13.33 -35.23 -0.47 -6.12 16 24 C 0.01 0.13 4.47 -3.83 -0.02 0.11 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.94 6.21 -51.93 -0.32 0.62 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.05 0.55 8.08 -51.92 -0.42 0.13 16 36 H 0.41 1.11 9.10 45.56 0.41 1.53 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.38 2.51 9.08 45.56 0.41 2.93 16 40 H 0.10 1.11 5.81 -51.93 -0.30 0.81 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -33.57 334.27 -8.00 -41.57 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.25 Total: -0.48 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -1.07 Total: -12.16 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.39 Total: -33.78 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -1.31 Total: -16.90 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.57 -8.00 -41.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401866766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.478 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds