Wall clock time and date at job start Mon Mar 30 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99895 * 2 1 4 4 H 1.48493 * 109.47623 * 270.00542 * 3 2 1 5 5 H 1.48504 * 109.47095 * 30.01040 * 3 2 1 6 6 H 1.48501 * 109.47084 * 150.00253 * 3 2 1 7 7 C 1.37876 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47168 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47168 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47283 * 180.02562 * 12 11 10 14 14 C 1.46846 * 110.99942 * 293.95697 * 13 12 11 15 15 C 1.53035 * 109.52744 * 174.16069 * 14 13 12 16 16 H 1.08995 * 109.50534 * 179.12351 * 15 14 13 17 17 O 1.42907 * 109.49738 * 299.23896 * 15 14 13 18 18 C 1.53123 * 109.27774 * 59.17321 * 15 14 13 19 19 C 1.53114 * 109.16198 * 302.35270 * 18 15 14 20 20 H 1.09000 * 109.50493 * 297.71120 * 19 18 15 21 21 C 1.50696 * 109.50126 * 177.59670 * 19 18 15 22 22 O 1.20830 * 119.99764 * 240.19077 * 21 19 18 23 23 O 1.34227 * 120.00468 * 60.19466 * 21 19 18 24 24 C 1.46844 * 111.00328 * 169.74543 * 13 12 11 25 25 H 0.96994 * 120.00501 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47234 * 60.00362 * 9 7 2 27 27 H 1.08995 * 109.46579 * 299.99705 * 9 7 2 28 28 H 1.09003 * 109.47112 * 60.00132 * 10 9 7 29 29 H 1.08996 * 109.47539 * 300.00097 * 10 9 7 30 30 H 1.09003 * 109.46615 * 60.00295 * 11 10 9 31 31 H 1.08995 * 109.47428 * 300.00131 * 11 10 9 32 32 H 1.09003 * 109.47112 * 60.00599 * 12 11 10 33 33 H 1.08996 * 109.47539 * 300.00564 * 12 11 10 34 34 H 1.09008 * 109.46456 * 294.17536 * 14 13 12 35 35 H 1.09003 * 109.46474 * 54.14041 * 14 13 12 36 36 H 0.96700 * 113.99995 * 299.99271 * 17 15 14 37 37 H 1.09000 * 109.52219 * 182.44440 * 18 15 14 38 38 H 1.08998 * 109.51778 * 62.25946 * 18 15 14 39 39 H 0.96704 * 117.00375 * 179.97438 * 23 21 19 40 40 H 1.09000 * 109.46271 * 305.85568 * 24 13 12 41 41 H 1.09008 * 109.46154 * 65.83367 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7003 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0031 13 7 1.7402 -7.4222 -0.0031 14 6 0.9964 -7.6005 1.2505 15 6 0.1317 -8.8597 1.1576 16 1 -0.4083 -9.0003 2.0939 17 8 -0.8013 -8.7195 0.0842 18 6 1.0304 -10.0721 0.8985 19 6 1.8296 -9.8399 -0.3867 20 1 1.1446 -9.7484 -1.2296 21 6 2.7601 -11.0026 -0.6175 22 8 3.9536 -10.8206 -0.6669 23 8 2.2632 -12.2404 -0.7683 24 6 2.6450 -8.5523 -0.2490 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6249 -2.5571 0.8897 28 1 2.8727 -3.6047 0.8877 29 1 2.8713 -3.6040 -0.8922 30 1 0.8528 -5.0447 -0.8906 31 1 0.8547 -5.0450 0.8894 32 1 3.1026 -6.0926 0.8860 33 1 3.1000 -6.0919 -0.8939 34 1 1.6986 -7.7024 2.0780 35 1 0.3582 -6.7334 1.4206 36 1 -1.4019 -7.9678 0.1809 37 1 0.4148 -10.9649 0.7884 38 1 1.7163 -10.2025 1.7355 39 1 2.8991 -12.9540 -0.9144 40 1 3.2043 -8.3766 -1.1679 41 1 3.3394 -8.6499 0.5857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401866768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:19 Heat of formation + Delta-G solvation = -161.584382 kcal Electronic energy + Delta-G solvation = -21022.952434 eV Core-core repulsion = 17708.785878 eV Total energy + Delta-G solvation = -3314.166556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.88178 -39.23578 -36.51509 -36.27824 -34.76850 -33.35158 -31.83297 -30.29434 -28.47333 -25.47282 -25.01705 -23.25526 -22.01516 -20.87848 -20.06807 -19.87202 -18.32001 -17.28219 -16.89954 -16.21230 -16.18643 -15.54026 -15.11162 -14.73601 -14.46290 -14.23860 -14.13710 -13.75125 -13.29350 -13.26477 -12.55601 -12.33345 -12.02128 -11.81058 -11.70366 -11.64869 -11.51824 -11.22488 -11.00474 -10.96649 -10.60122 -10.49814 -10.48442 -10.29521 -9.95519 -9.60596 -9.25660 -9.00503 -8.33219 -8.30879 -5.97679 -3.99747 1.91419 2.67692 3.33138 3.39187 3.42650 3.79055 4.18763 4.28687 4.48040 4.51211 4.66660 4.75759 5.07531 5.12668 5.23753 5.33443 5.36543 5.38087 5.44838 5.50645 5.58908 5.73929 5.78824 5.88015 5.89635 6.13267 6.19922 6.23040 6.50368 6.80682 6.95594 7.01499 7.04424 7.22760 7.59196 7.61326 7.71172 7.86966 8.03406 8.46481 9.07776 9.64183 11.13694 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.003016 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.073280 B = 9282.056241 C = 9815.798524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.110 4.110 11 C -0.112 4.112 12 C 0.057 3.943 13 N -0.527 5.527 14 C 0.013 3.987 15 C 0.112 3.888 16 H 0.064 0.936 17 O -0.554 6.554 18 C -0.104 4.104 19 C -0.072 4.072 20 H 0.127 0.873 21 C 0.485 3.515 22 O -0.516 6.516 23 O -0.515 6.515 24 C 0.071 3.929 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.014 0.986 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.382 0.618 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.408 0.592 40 H 0.084 0.916 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 -23.794 2.154 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.150 4.150 12 C -0.070 4.070 13 N -0.251 5.251 14 C -0.115 4.115 15 C 0.053 3.947 16 H 0.082 0.918 17 O -0.360 6.360 18 C -0.142 4.142 19 C -0.092 4.092 20 H 0.145 0.855 21 C 0.327 3.673 22 O -0.404 6.404 23 O -0.326 6.326 24 C -0.057 4.057 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.230 0.770 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.267 0.733 40 H 0.103 0.897 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.879 -23.818 1.614 23.888 hybrid contribution 1.261 0.974 0.789 1.778 sum 2.140 -22.843 2.403 23.069 Atomic orbital electron populations 1.69963 1.06038 1.26525 1.51076 1.25028 0.94844 0.99222 0.95420 0.86614 0.79845 0.83559 0.78103 1.20666 1.21248 1.19927 1.21296 0.93030 0.91233 1.50287 0.92785 1.19077 0.93992 0.91315 0.97098 1.21606 0.99129 0.93975 1.00115 1.21666 0.97828 0.93503 1.01973 1.22258 0.95972 0.88012 1.00742 1.61803 1.27485 1.01815 1.33980 1.22975 0.98112 0.99370 0.91033 1.21730 0.89493 0.93420 0.90084 0.91780 1.86458 1.49375 1.53526 1.46631 1.21575 0.97777 0.98899 0.95926 1.20958 0.96370 0.89499 1.02333 0.85485 1.23571 0.88305 0.83783 0.71690 1.90733 1.17711 1.85281 1.46673 1.84556 1.45811 1.18395 1.83857 1.21872 0.92945 0.88649 1.02219 0.93051 0.96599 0.96798 0.93722 0.93396 0.91514 0.92714 0.95018 0.90718 0.94079 0.89144 0.77026 0.89628 0.90509 0.73310 0.89708 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.11 -1.85 5.15 -26.73 -0.14 -1.99 16 12 C 0.06 0.80 4.96 -3.82 -0.02 0.78 16 13 N -0.53 -6.54 4.54 -234.67 -1.06 -7.60 16 14 C 0.01 0.14 4.95 -3.84 -0.02 0.12 16 15 C 0.11 1.01 3.81 -26.65 -0.10 0.90 16 16 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 17 O -0.55 -5.57 12.65 -35.23 -0.45 -6.02 16 18 C -0.10 -0.90 4.94 -26.61 -0.13 -1.03 16 19 C -0.07 -0.73 2.64 -91.70 -0.24 -0.97 16 20 H 0.13 1.37 7.80 -51.93 -0.40 0.97 16 21 C 0.48 4.91 7.63 36.00 0.27 5.18 16 22 O -0.52 -6.74 16.74 -18.75 -0.31 -7.06 16 23 O -0.51 -3.85 13.36 -39.25 -0.52 -4.38 16 24 C 0.07 0.83 4.03 -3.84 -0.02 0.81 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.89 6.44 -51.93 -0.33 0.55 16 32 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.07 1.05 7.98 -51.93 -0.41 0.63 16 34 H 0.04 0.43 8.14 -51.92 -0.42 0.00 16 35 H 0.09 1.00 6.22 -51.93 -0.32 0.67 16 36 H 0.38 2.85 9.08 45.56 0.41 3.26 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.41 1.32 9.10 45.56 0.41 1.74 16 40 H 0.08 1.04 7.99 -51.93 -0.41 0.62 16 41 H 0.04 0.48 8.08 -51.92 -0.42 0.06 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -33.71 334.38 -7.92 -41.64 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.25 Total: -0.17 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -1.08 Total: -11.84 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: -0.33 Total: -34.02 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -1.28 Total: -17.45 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.71 -7.92 -41.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401866768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.948 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds