Wall clock time and date at job start Mon Mar 30 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99895 * 2 1 4 4 H 1.48493 * 109.47623 * 270.00542 * 3 2 1 5 5 H 1.48504 * 109.47095 * 30.01040 * 3 2 1 6 6 H 1.48501 * 109.47084 * 150.00253 * 3 2 1 7 7 C 1.37876 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47168 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47168 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47283 * 180.02562 * 12 11 10 14 14 C 1.46846 * 110.99942 * 293.95697 * 13 12 11 15 15 C 1.53035 * 109.52744 * 174.16069 * 14 13 12 16 16 H 1.08995 * 109.50534 * 179.12351 * 15 14 13 17 17 O 1.42907 * 109.49738 * 299.23896 * 15 14 13 18 18 C 1.53123 * 109.27774 * 59.17321 * 15 14 13 19 19 C 1.53114 * 109.16198 * 302.35270 * 18 15 14 20 20 H 1.09000 * 109.50493 * 297.71120 * 19 18 15 21 21 C 1.50696 * 109.50126 * 177.59670 * 19 18 15 22 22 O 1.20830 * 119.99764 * 240.19077 * 21 19 18 23 23 O 1.34227 * 120.00468 * 60.19466 * 21 19 18 24 24 C 1.46844 * 111.00328 * 169.74543 * 13 12 11 25 25 H 0.96994 * 120.00501 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47234 * 60.00362 * 9 7 2 27 27 H 1.08995 * 109.46579 * 299.99705 * 9 7 2 28 28 H 1.09003 * 109.47112 * 60.00132 * 10 9 7 29 29 H 1.08996 * 109.47539 * 300.00097 * 10 9 7 30 30 H 1.09003 * 109.46615 * 60.00295 * 11 10 9 31 31 H 1.08995 * 109.47428 * 300.00131 * 11 10 9 32 32 H 1.09003 * 109.47112 * 60.00599 * 12 11 10 33 33 H 1.08996 * 109.47539 * 300.00564 * 12 11 10 34 34 H 1.09008 * 109.46456 * 294.17536 * 14 13 12 35 35 H 1.09003 * 109.46474 * 54.14041 * 14 13 12 36 36 H 0.96700 * 113.99995 * 299.99271 * 17 15 14 37 37 H 1.09000 * 109.52219 * 182.44440 * 18 15 14 38 38 H 1.08998 * 109.51778 * 62.25946 * 18 15 14 39 39 H 0.96704 * 117.00375 * 179.97438 * 23 21 19 40 40 H 1.09000 * 109.46271 * 305.85568 * 24 13 12 41 41 H 1.09008 * 109.46154 * 65.83367 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7003 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0031 13 7 1.7402 -7.4222 -0.0031 14 6 0.9964 -7.6005 1.2505 15 6 0.1317 -8.8597 1.1576 16 1 -0.4083 -9.0003 2.0939 17 8 -0.8013 -8.7195 0.0842 18 6 1.0304 -10.0721 0.8985 19 6 1.8296 -9.8399 -0.3867 20 1 1.1446 -9.7484 -1.2296 21 6 2.7601 -11.0026 -0.6175 22 8 3.9536 -10.8206 -0.6669 23 8 2.2632 -12.2404 -0.7683 24 6 2.6450 -8.5523 -0.2490 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6249 -2.5571 0.8897 28 1 2.8727 -3.6047 0.8877 29 1 2.8713 -3.6040 -0.8922 30 1 0.8528 -5.0447 -0.8906 31 1 0.8547 -5.0450 0.8894 32 1 3.1026 -6.0926 0.8860 33 1 3.1000 -6.0919 -0.8939 34 1 1.6986 -7.7024 2.0780 35 1 0.3582 -6.7334 1.4206 36 1 -1.4019 -7.9678 0.1809 37 1 0.4148 -10.9649 0.7884 38 1 1.7163 -10.2025 1.7355 39 1 2.8991 -12.9540 -0.9144 40 1 3.2043 -8.3766 -1.1679 41 1 3.3394 -8.6499 0.5857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401866768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:19 Heat of formation + Delta-G solvation = -187.358642 kcal Electronic energy + Delta-G solvation = -21024.070090 eV Core-core repulsion = 17708.785878 eV Total energy + Delta-G solvation = -3315.284212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.67858 -40.07646 -37.40858 -37.16702 -36.14617 -34.84531 -33.45486 -31.09522 -30.12298 -26.89781 -26.01318 -24.61343 -22.96746 -22.23762 -21.46398 -20.76078 -19.07862 -18.42121 -18.06530 -17.71274 -17.01380 -16.54351 -16.36796 -16.27563 -15.62153 -15.33899 -15.02610 -14.76194 -14.41932 -14.17532 -14.05677 -13.76069 -13.53582 -13.06795 -12.91203 -12.79329 -12.57133 -12.44217 -12.33182 -12.26408 -12.02034 -11.97387 -11.79013 -11.41756 -11.32251 -11.17005 -10.98517 -10.67324 -10.54305 -9.29098 -8.19334 -6.30367 1.13373 1.39919 1.41273 1.52302 1.96896 2.41337 2.91166 3.13488 3.46299 3.50608 3.76658 3.89460 3.95575 4.11854 4.21621 4.30840 4.42111 4.51980 4.54659 4.57674 4.69027 4.71460 4.74477 4.80784 4.91467 4.95598 5.04943 5.14460 5.24570 5.29056 5.37587 5.56393 5.56893 5.79726 5.88227 6.03969 6.08297 6.27548 6.87188 6.96053 6.98928 7.38843 8.92455 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.003016 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.073280 B = 9282.056241 C = 9815.798524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.098 4.098 11 C -0.098 4.098 12 C 0.066 3.934 13 N -0.533 5.533 14 C 0.010 3.990 15 C 0.115 3.885 16 H 0.088 0.912 17 O -0.570 6.570 18 C -0.102 4.102 19 C -0.069 4.069 20 H 0.121 0.879 21 C 0.494 3.506 22 O -0.550 6.550 23 O -0.507 6.507 24 C 0.074 3.926 25 H 0.264 0.736 26 H -0.010 1.010 27 H -0.008 1.008 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.391 0.609 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.428 0.572 40 H 0.074 0.926 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 -24.663 2.702 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.137 4.137 11 C -0.136 4.136 12 C -0.062 4.062 13 N -0.258 5.258 14 C -0.118 4.118 15 C 0.056 3.944 16 H 0.106 0.894 17 O -0.377 6.377 18 C -0.139 4.139 19 C -0.088 4.088 20 H 0.138 0.862 21 C 0.337 3.663 22 O -0.441 6.441 23 O -0.320 6.320 24 C -0.054 4.054 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.010 0.990 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.240 0.760 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.290 0.710 40 H 0.092 0.908 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.416 -24.724 2.161 24.858 hybrid contribution 1.036 1.189 0.605 1.689 sum 2.452 -23.535 2.765 23.823 Atomic orbital electron populations 1.70091 1.07756 1.27751 1.51768 1.25984 0.95792 1.03342 0.94776 0.85465 0.78680 0.78515 0.78501 1.19804 1.20618 1.18807 1.21755 0.93526 0.92652 1.50414 0.92383 1.18993 0.94432 0.93051 0.94699 1.21415 0.98048 0.93893 1.00306 1.21456 0.97838 0.92615 1.01717 1.22041 0.95165 0.88038 1.00907 1.61752 1.27429 1.01299 1.35275 1.23075 0.98166 1.00239 0.90310 1.21806 0.89263 0.92482 0.90855 0.89414 1.86433 1.49753 1.54170 1.47357 1.21615 0.97804 0.99116 0.95371 1.20863 0.96039 0.88872 1.03022 0.86160 1.23463 0.87559 0.84452 0.70791 1.90728 1.19030 1.85886 1.48413 1.84505 1.46316 1.18098 1.83110 1.21810 0.92942 0.89096 1.01544 0.92761 0.99190 0.98994 0.93292 0.93305 0.92450 0.92335 0.94667 0.90828 0.93513 0.89731 0.75960 0.88672 0.89408 0.70988 0.90780 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.10 -4.04 5.15 30.59 0.16 -3.89 16 11 C -0.10 -3.25 5.15 30.59 0.16 -3.09 16 12 C 0.07 1.81 4.96 86.30 0.43 2.23 16 13 N -0.53 -12.76 4.54 -896.35 -4.07 -16.83 16 14 C 0.01 0.20 4.95 86.33 0.43 0.63 16 15 C 0.12 1.82 3.81 30.65 0.12 1.94 16 16 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 17 O -0.57 -10.55 12.65 -148.98 -1.88 -12.44 16 18 C -0.10 -1.52 4.94 30.67 0.15 -1.37 16 19 C -0.07 -1.29 2.64 -11.49 -0.03 -1.32 16 20 H 0.12 2.46 7.80 -2.39 -0.02 2.44 16 21 C 0.49 9.30 7.63 71.23 0.54 9.85 16 22 O -0.55 -13.91 16.74 21.95 0.37 -13.54 16 23 O -0.51 -6.48 13.36 -51.38 -0.69 -7.16 16 24 C 0.07 1.66 4.03 86.32 0.35 2.01 16 25 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 26 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.88 6.44 -2.39 -0.02 1.87 16 32 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 33 H 0.07 2.03 7.98 -2.39 -0.02 2.01 16 34 H 0.05 0.88 8.14 -2.38 -0.02 0.87 16 35 H 0.08 1.77 6.22 -2.39 -0.01 1.76 16 36 H 0.39 5.38 9.08 -74.06 -0.67 4.71 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.43 1.79 9.10 -74.05 -0.67 1.11 16 40 H 0.07 1.80 7.99 -2.39 -0.02 1.78 16 41 H 0.04 0.86 8.08 -2.38 -0.02 0.84 16 Total: -1.00 -72.08 334.38 -1.14 -73.22 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -0.32 Total: 9.58 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 3.14 Total: -22.48 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -3.78 Total: -73.89 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -2.20 Total: -33.14 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -72.08 -1.14 -73.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401866768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.143 kcal (2) G-P(sol) polarization free energy of solvation -72.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds