Wall clock time and date at job start Mon Mar 30 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99709 * 2 1 4 4 H 1.48499 * 109.47095 * 239.99935 * 3 2 1 5 5 H 1.48496 * 109.47191 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47086 * 119.99789 * 3 2 1 7 7 C 1.37868 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99728 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47323 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47323 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.46987 * 179.97438 * 12 11 10 14 14 C 1.46852 * 110.99780 * 314.20619 * 13 12 11 15 15 C 1.53038 * 109.51991 * 174.16427 * 14 13 12 16 16 H 1.09005 * 109.50470 * 299.23445 * 15 14 13 17 17 O 1.42901 * 109.49935 * 179.15892 * 15 14 13 18 18 C 1.53121 * 109.28145 * 59.17795 * 15 14 13 19 19 C 1.53116 * 109.15919 * 302.34666 * 18 15 14 20 20 H 1.09002 * 109.50351 * 297.71191 * 19 18 15 21 21 C 1.50700 * 109.53480 * 177.61205 * 19 18 15 22 22 O 1.20820 * 120.00494 * 240.10009 * 21 19 18 23 23 O 1.34229 * 119.99849 * 60.09744 * 21 19 18 24 24 C 1.46851 * 110.99868 * 189.99760 * 13 12 11 25 25 H 0.96997 * 119.99826 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47248 * 60.00302 * 9 7 2 27 27 H 1.08999 * 109.46926 * 300.00053 * 9 7 2 28 28 H 1.09000 * 109.47544 * 59.99547 * 10 9 7 29 29 H 1.09006 * 109.47232 * 299.99760 * 10 9 7 30 30 H 1.09000 * 109.47382 * 59.99201 * 11 10 9 31 31 H 1.09006 * 109.46570 * 299.99919 * 11 10 9 32 32 H 1.08997 * 109.47326 * 60.00034 * 12 11 10 33 33 H 1.08999 * 109.46859 * 299.99434 * 12 11 10 34 34 H 1.08996 * 109.46331 * 294.17770 * 14 13 12 35 35 H 1.08998 * 109.46031 * 54.15532 * 14 13 12 36 36 H 0.96705 * 113.99881 * 60.00472 * 17 15 14 37 37 H 1.08997 * 109.52457 * 182.43793 * 18 15 14 38 38 H 1.09000 * 109.52188 * 62.25069 * 18 15 14 39 39 H 0.96702 * 117.00336 * 180.02562 * 23 21 19 40 40 H 1.08999 * 109.46045 * 65.82355 * 24 13 12 41 41 H 1.08995 * 109.46195 * 305.85676 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4748 -6.1499 -0.0018 13 7 1.7403 -7.4222 -0.0018 14 6 0.6497 -7.4002 0.9814 15 6 -0.1806 -8.6793 0.8528 16 1 -0.6104 -8.7352 -0.1474 17 8 -1.2299 -8.6664 1.8228 18 6 0.7214 -9.8936 1.0903 19 6 1.8758 -9.8665 0.0848 20 1 1.4785 -9.9411 -0.9275 21 6 2.8014 -11.0261 0.3487 22 8 3.9594 -10.8235 0.6275 23 8 2.3392 -12.2841 0.2742 24 6 2.6465 -8.5530 0.2356 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5568 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6042 0.8894 29 1 2.8721 -3.6043 -0.8906 30 1 0.8540 -5.0446 -0.8913 31 1 0.8536 -5.0450 0.8887 32 1 3.1015 -6.0926 0.8881 33 1 3.1013 -6.0917 -0.8919 34 1 1.0677 -7.3380 1.9861 35 1 0.0134 -6.5343 0.7986 36 1 -1.8392 -7.9208 1.7332 37 1 0.1436 -10.8082 0.9570 38 1 1.1204 -9.8582 2.1040 39 1 2.9703 -12.9949 0.4520 40 1 3.0552 -8.4855 1.2438 41 1 3.4605 -8.5243 -0.4887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401866771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:22 Heat of formation + Delta-G solvation = -160.969264 kcal Electronic energy + Delta-G solvation = -20919.900303 eV Core-core repulsion = 17605.760420 eV Total energy + Delta-G solvation = -3314.139882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94703 -39.27831 -36.73650 -36.44397 -35.01347 -33.42981 -31.82941 -30.12242 -28.48321 -25.59493 -25.05770 -23.26120 -22.08219 -20.87720 -20.08428 -19.93127 -18.43786 -17.66660 -16.72703 -16.23083 -16.15244 -15.61195 -15.59411 -14.81194 -14.48208 -14.30893 -14.09896 -13.74882 -13.38797 -12.99422 -12.63750 -12.50159 -12.33966 -11.89882 -11.73245 -11.62820 -11.41200 -11.22718 -11.05465 -10.99155 -10.66988 -10.57272 -10.52030 -10.28556 -10.11670 -9.64015 -9.28565 -9.04420 -8.43774 -8.33701 -5.99266 -4.01522 1.83022 2.56646 3.33599 3.37851 3.40474 3.72196 3.92645 4.36965 4.46594 4.50612 4.70099 4.73541 4.98585 5.01949 5.17939 5.29279 5.33673 5.36591 5.43201 5.53230 5.56177 5.69161 5.81798 5.82203 5.86610 6.09507 6.13132 6.20434 6.42333 6.74958 6.89551 6.91065 6.94296 7.17404 7.44345 7.53153 7.68352 7.83737 8.01234 8.44287 9.05637 9.62523 11.12083 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.003038 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.092488 B = 9212.963540 C = 9904.689640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.110 4.110 11 C -0.121 4.121 12 C 0.058 3.942 13 N -0.534 5.534 14 C 0.011 3.989 15 C 0.110 3.890 16 H 0.070 0.930 17 O -0.567 6.567 18 C -0.105 4.105 19 C -0.074 4.074 20 H 0.122 0.878 21 C 0.489 3.511 22 O -0.512 6.512 23 O -0.514 6.514 24 C 0.067 3.933 25 H 0.261 0.739 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.385 0.615 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.410 0.590 40 H 0.046 0.954 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 -23.348 0.539 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.159 4.159 12 C -0.069 4.069 13 N -0.259 5.259 14 C -0.117 4.117 15 C 0.051 3.949 16 H 0.088 0.912 17 O -0.372 6.372 18 C -0.142 4.142 19 C -0.094 4.094 20 H 0.140 0.860 21 C 0.330 3.670 22 O -0.400 6.400 23 O -0.326 6.326 24 C -0.061 4.061 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.233 0.767 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.064 0.936 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.802 -23.457 0.284 23.473 hybrid contribution 1.042 1.116 0.715 1.686 sum 1.845 -22.341 0.999 22.439 Atomic orbital electron populations 1.69954 1.06046 1.26669 1.50941 1.25026 0.94851 0.99230 0.95368 0.86667 0.79597 0.83181 0.78614 1.20242 1.21287 1.20273 1.21249 0.93007 0.91214 1.50494 0.92807 1.19075 0.93982 0.91334 0.97082 1.21603 0.99137 0.93783 1.00256 1.21836 0.98013 0.94016 1.02002 1.22259 0.96288 0.87308 1.01027 1.61906 1.11573 1.03282 1.49181 1.23035 0.94908 0.99249 0.94520 1.21680 0.87514 0.93594 0.92100 0.91226 1.86458 1.41839 1.52457 1.56492 1.21464 0.94812 0.99194 0.98758 1.20925 0.94780 0.90266 1.03383 0.86037 1.23292 0.87477 0.83770 0.72460 1.90743 1.19508 1.85735 1.43970 1.84537 1.47939 1.17010 1.83114 1.21928 0.94396 0.88152 1.01632 0.92975 0.96615 0.96804 0.93588 0.93289 0.91498 0.92287 0.94704 0.90346 0.93890 0.88675 0.76725 0.89627 0.90868 0.73075 0.93617 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 11 C -0.12 -1.96 4.46 -26.73 -0.12 -2.07 16 12 C 0.06 0.79 5.27 -3.82 -0.02 0.77 16 13 N -0.53 -6.39 4.81 -234.67 -1.13 -7.52 16 14 C 0.01 0.13 4.47 -3.83 -0.02 0.11 16 15 C 0.11 1.08 3.63 -26.65 -0.10 0.98 16 16 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 17 O -0.57 -5.65 13.33 -35.23 -0.47 -6.12 16 18 C -0.10 -0.96 4.87 -26.61 -0.13 -1.09 16 19 C -0.07 -0.67 2.79 -91.69 -0.26 -0.93 16 20 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 21 C 0.49 4.62 7.63 36.01 0.27 4.90 16 22 O -0.51 -6.42 16.74 -18.75 -0.31 -6.74 16 23 O -0.51 -3.52 13.35 -39.26 -0.52 -4.04 16 24 C 0.07 0.74 4.00 -3.83 -0.02 0.72 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.94 6.21 -51.93 -0.32 0.62 16 32 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 1.11 5.81 -51.93 -0.30 0.81 16 36 H 0.38 2.51 9.08 45.56 0.41 2.93 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.41 1.11 9.10 45.56 0.41 1.53 16 40 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 41 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -33.54 334.27 -8.00 -41.54 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.25 Total: -0.42 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.07 Total: -12.18 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: -0.39 Total: -33.82 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -1.31 Total: -16.90 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.54 -8.00 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401866771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.434 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds