Wall clock time and date at job start Mon Mar 30 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99709 * 2 1 4 4 H 1.48499 * 109.47095 * 239.99935 * 3 2 1 5 5 H 1.48496 * 109.47191 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47086 * 119.99789 * 3 2 1 7 7 C 1.37868 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99728 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47323 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47323 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.46987 * 179.97438 * 12 11 10 14 14 C 1.46852 * 110.99780 * 314.20619 * 13 12 11 15 15 C 1.53038 * 109.51991 * 174.16427 * 14 13 12 16 16 H 1.09005 * 109.50470 * 299.23445 * 15 14 13 17 17 O 1.42901 * 109.49935 * 179.15892 * 15 14 13 18 18 C 1.53121 * 109.28145 * 59.17795 * 15 14 13 19 19 C 1.53116 * 109.15919 * 302.34666 * 18 15 14 20 20 H 1.09002 * 109.50351 * 297.71191 * 19 18 15 21 21 C 1.50700 * 109.53480 * 177.61205 * 19 18 15 22 22 O 1.20820 * 120.00494 * 240.10009 * 21 19 18 23 23 O 1.34229 * 119.99849 * 60.09744 * 21 19 18 24 24 C 1.46851 * 110.99868 * 189.99760 * 13 12 11 25 25 H 0.96997 * 119.99826 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47248 * 60.00302 * 9 7 2 27 27 H 1.08999 * 109.46926 * 300.00053 * 9 7 2 28 28 H 1.09000 * 109.47544 * 59.99547 * 10 9 7 29 29 H 1.09006 * 109.47232 * 299.99760 * 10 9 7 30 30 H 1.09000 * 109.47382 * 59.99201 * 11 10 9 31 31 H 1.09006 * 109.46570 * 299.99919 * 11 10 9 32 32 H 1.08997 * 109.47326 * 60.00034 * 12 11 10 33 33 H 1.08999 * 109.46859 * 299.99434 * 12 11 10 34 34 H 1.08996 * 109.46331 * 294.17770 * 14 13 12 35 35 H 1.08998 * 109.46031 * 54.15532 * 14 13 12 36 36 H 0.96705 * 113.99881 * 60.00472 * 17 15 14 37 37 H 1.08997 * 109.52457 * 182.43793 * 18 15 14 38 38 H 1.09000 * 109.52188 * 62.25069 * 18 15 14 39 39 H 0.96702 * 117.00336 * 180.02562 * 23 21 19 40 40 H 1.08999 * 109.46045 * 65.82355 * 24 13 12 41 41 H 1.08995 * 109.46195 * 305.85676 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4748 -6.1499 -0.0018 13 7 1.7403 -7.4222 -0.0018 14 6 0.6497 -7.4002 0.9814 15 6 -0.1806 -8.6793 0.8528 16 1 -0.6104 -8.7352 -0.1474 17 8 -1.2299 -8.6664 1.8228 18 6 0.7214 -9.8936 1.0903 19 6 1.8758 -9.8665 0.0848 20 1 1.4785 -9.9411 -0.9275 21 6 2.8014 -11.0261 0.3487 22 8 3.9594 -10.8235 0.6275 23 8 2.3392 -12.2841 0.2742 24 6 2.6465 -8.5530 0.2356 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5568 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6042 0.8894 29 1 2.8721 -3.6043 -0.8906 30 1 0.8540 -5.0446 -0.8913 31 1 0.8536 -5.0450 0.8887 32 1 3.1015 -6.0926 0.8881 33 1 3.1013 -6.0917 -0.8919 34 1 1.0677 -7.3380 1.9861 35 1 0.0134 -6.5343 0.7986 36 1 -1.8392 -7.9208 1.7332 37 1 0.1436 -10.8082 0.9570 38 1 1.1204 -9.8582 2.1040 39 1 2.9703 -12.9949 0.4520 40 1 3.0552 -8.4855 1.2438 41 1 3.4605 -8.5243 -0.4887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401866771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:22 Heat of formation + Delta-G solvation = -186.886205 kcal Electronic energy + Delta-G solvation = -20921.024146 eV Core-core repulsion = 17605.760420 eV Total energy + Delta-G solvation = -3315.263725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70838 -40.13196 -37.64659 -37.18633 -36.36167 -34.98089 -33.46383 -30.95573 -30.11444 -26.94524 -26.13048 -24.62066 -22.97347 -22.30785 -21.34765 -20.88760 -19.14916 -18.43894 -18.41151 -17.48877 -16.97966 -16.70114 -16.54027 -16.36454 -15.90789 -15.31045 -15.08859 -14.71534 -14.45147 -14.15830 -13.97738 -13.73625 -13.53327 -13.41962 -12.98807 -12.81352 -12.58626 -12.42834 -12.33627 -12.29283 -12.08990 -11.88903 -11.82009 -11.46731 -11.33812 -11.18180 -11.03088 -10.87836 -10.54261 -9.43105 -8.19751 -6.30782 1.10714 1.39750 1.42626 1.50585 1.90083 2.41049 2.86396 3.13142 3.14482 3.60118 3.73190 3.85532 3.96391 4.07294 4.13664 4.20664 4.39719 4.42818 4.47221 4.52708 4.66050 4.69315 4.70584 4.80850 4.88146 4.91626 5.08056 5.09688 5.22458 5.27429 5.32924 5.54593 5.55982 5.78259 5.87060 5.92906 5.96243 6.26840 6.83072 6.86546 6.94659 7.38465 8.91807 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.003038 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.092488 B = 9212.963540 C = 9904.689640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.098 4.098 11 C -0.108 4.108 12 C 0.065 3.935 13 N -0.531 5.531 14 C 0.011 3.989 15 C 0.116 3.884 16 H 0.081 0.919 17 O -0.579 6.579 18 C -0.100 4.100 19 C -0.068 4.068 20 H 0.140 0.860 21 C 0.497 3.503 22 O -0.548 6.548 23 O -0.506 6.506 24 C 0.068 3.932 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.010 1.010 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.085 0.915 34 H 0.030 0.970 35 H 0.089 0.911 36 H 0.398 0.602 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.430 0.570 40 H 0.032 0.968 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 -24.241 0.133 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.137 4.137 11 C -0.146 4.146 12 C -0.062 4.062 13 N -0.256 5.256 14 C -0.117 4.117 15 C 0.057 3.943 16 H 0.099 0.901 17 O -0.387 6.387 18 C -0.138 4.138 19 C -0.088 4.088 20 H 0.158 0.842 21 C 0.340 3.660 22 O -0.438 6.438 23 O -0.319 6.319 24 C -0.060 4.060 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.008 0.992 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.049 0.951 35 H 0.107 0.893 36 H 0.248 0.752 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.292 0.708 40 H 0.050 0.950 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.287 -24.385 -0.121 24.419 hybrid contribution 0.834 1.344 0.857 1.799 sum 2.120 -23.042 0.736 23.151 Atomic orbital electron populations 1.70085 1.07745 1.27819 1.51693 1.25978 0.95791 1.03324 0.94757 0.85529 0.78322 0.78211 0.79167 1.19154 1.20747 1.19278 1.21727 0.93546 0.92657 1.50538 0.92355 1.18994 0.94438 0.93046 0.94719 1.21412 0.98057 0.93749 1.00438 1.21643 0.98043 0.93015 1.01913 1.22085 0.95546 0.87260 1.01284 1.61903 1.11613 1.02772 1.49336 1.23056 0.94769 1.00224 0.93650 1.21643 0.87335 0.92711 0.92628 0.90074 1.86431 1.42113 1.53384 1.56741 1.21432 0.94742 0.99497 0.98109 1.20853 0.94339 0.89223 1.04345 0.84241 1.23230 0.86741 0.84517 0.71476 1.90741 1.20972 1.86331 1.45795 1.84487 1.48395 1.16646 1.82409 1.21906 0.94491 0.88731 1.00837 0.92755 0.98937 0.99188 0.93498 0.92889 0.91726 0.92310 0.94946 0.89678 0.95142 0.89273 0.75163 0.88360 0.92008 0.70824 0.94968 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.29 21.44 0.28 -56.78 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 3 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.10 -3.98 5.15 30.59 0.16 -3.82 16 11 C -0.11 -3.48 4.46 30.59 0.14 -3.34 16 12 C 0.07 1.73 5.27 86.30 0.46 2.19 16 13 N -0.53 -12.12 4.81 -896.35 -4.31 -16.43 16 14 C 0.01 0.25 4.47 86.32 0.39 0.63 16 15 C 0.12 2.07 3.63 30.65 0.11 2.19 16 16 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 17 O -0.58 -10.72 13.33 -148.98 -1.99 -12.70 16 18 C -0.10 -1.66 4.87 30.67 0.15 -1.51 16 19 C -0.07 -1.11 2.79 -11.49 -0.03 -1.14 16 20 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 21 C 0.50 8.57 7.63 71.24 0.54 9.11 16 22 O -0.55 -13.25 16.74 21.98 0.37 -12.88 16 23 O -0.51 -5.67 13.35 -51.41 -0.69 -6.36 16 24 C 0.07 1.43 4.00 86.32 0.35 1.77 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 1.88 6.21 -2.38 -0.01 1.87 16 32 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 2.04 5.81 -2.39 -0.01 2.03 16 36 H 0.40 4.73 9.08 -74.05 -0.67 4.05 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.43 1.28 9.10 -74.06 -0.67 0.61 16 40 H 0.03 0.76 8.08 -2.39 -0.02 0.74 16 41 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -71.69 334.27 -1.52 -73.22 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -0.32 Total: 8.69 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 3.10 Total: -23.27 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -4.02 Total: -73.21 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -2.30 Total: -31.94 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -71.69 -1.52 -73.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401866771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.669 kcal (2) G-P(sol) polarization free energy of solvation -71.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds